Wall clock time and date at job start Mon Mar 30 2020 06:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00174 * 2 1 4 4 N 1.46896 * 109.47250 * 124.99655 * 3 2 1 5 5 C 1.46898 * 111.00060 * 288.69194 * 4 3 2 6 6 C 1.50707 * 109.47165 * 160.25639 * 5 4 3 7 7 H 1.07993 * 119.99900 * 1.77428 * 6 5 4 8 8 C 1.37881 * 119.99966 * 181.76912 * 6 5 4 9 9 N 1.31517 * 119.99885 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99842 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47115 * 89.99995 * 10 8 6 12 12 H 1.48500 * 109.46784 * 210.00277 * 10 8 6 13 13 H 1.48501 * 109.47004 * 329.99664 * 10 8 6 14 14 C 1.46904 * 111.00266 * 164.74380 * 4 3 2 15 15 C 1.50703 * 109.46769 * 293.95339 * 14 4 3 16 16 N 1.30259 * 125.61689 * 89.97219 * 15 14 4 17 17 C 1.34479 * 108.69677 * 180.02562 * 16 15 14 18 18 C 1.34330 * 107.66927 * 0.02562 * 17 16 15 19 19 C 1.50700 * 126.44153 * 180.02562 * 18 17 16 20 20 C 1.53004 * 117.50034 * 188.74701 * 19 18 17 21 21 C 1.52995 * 117.50285 * 120.08609 * 19 18 17 22 22 O 1.33968 * 125.61902 * 270.01768 * 15 14 4 23 23 H 1.08002 * 119.99738 * 179.97438 * 1 2 3 24 24 H 1.07996 * 119.99912 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.00200 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.46825 * 4.99909 * 3 2 1 27 27 H 1.09003 * 109.47564 * 244.99968 * 3 2 1 28 28 H 1.09002 * 109.47579 * 280.26042 * 5 4 3 29 29 H 1.09007 * 109.47190 * 40.26060 * 5 4 3 30 30 H 0.96998 * 119.99495 * 180.02562 * 9 8 6 31 31 H 1.08990 * 109.47510 * 173.95447 * 14 4 3 32 32 H 1.09000 * 109.47165 * 53.95068 * 14 4 3 33 33 H 1.08000 * 126.16614 * 179.73625 * 17 16 15 34 34 H 1.09002 * 115.55303 * 334.41673 * 19 18 17 35 35 H 1.08998 * 117.49555 * 359.97438 * 20 19 18 36 36 H 1.08999 * 117.49606 * 145.01961 * 20 19 18 37 37 H 1.08993 * 117.50714 * 214.98059 * 21 19 18 38 38 H 1.09009 * 117.49250 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1345 5 6 2.2745 1.4729 2.4062 6 6 3.1595 1.0204 3.5390 7 1 4.1681 0.6908 3.3377 8 6 2.6816 1.0272 4.8323 9 7 1.4532 1.4281 5.0773 10 14 3.7789 0.4669 6.2364 11 1 4.5304 1.6304 6.7718 12 1 2.9427 -0.1207 7.3138 13 1 4.7356 -0.5544 5.7397 14 6 3.9912 2.4006 0.9729 15 6 4.8733 2.0909 -0.2092 16 7 4.6508 2.4590 -1.4387 17 6 5.6499 2.0005 -2.2134 18 6 6.5051 1.3316 -1.4224 19 6 7.7746 0.6448 -1.8556 20 6 8.4913 -0.2304 -0.8253 21 6 9.0856 1.1217 -1.2274 22 8 6.0149 1.3911 -0.1686 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3585 2.1316 0.0896 27 1 2.6213 1.4026 -0.9314 28 1 2.0000 2.5173 2.5545 29 1 1.3732 0.8602 2.3823 30 1 1.1172 1.4332 5.9872 31 1 4.6013 2.4683 1.8735 32 1 3.4815 3.3497 0.8071 33 1 5.7449 2.1405 -3.2801 34 1 7.8033 0.3226 -2.8965 35 1 8.0448 -0.3090 0.1659 36 1 8.9918 -1.1280 -1.1886 37 1 9.9768 1.1132 -1.8548 38 1 9.0298 1.9327 -0.5011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292270968.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:52 Heat of formation + Delta-G solvation = 56.950482 kcal Electronic energy + Delta-G solvation = -19398.159979 eV Core-core repulsion = 16436.267477 eV Total energy + Delta-G solvation = -2961.892502 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.34797 -38.97080 -38.04794 -35.72062 -34.99574 -34.26086 -31.65198 -29.33155 -28.19652 -25.81421 -24.10597 -23.55232 -23.17587 -22.30601 -21.41548 -20.64308 -18.58928 -18.09601 -17.79461 -16.95894 -16.73765 -16.14069 -16.07201 -15.62053 -15.52141 -14.91056 -14.26812 -14.20678 -14.09489 -13.45540 -13.22095 -13.09964 -12.85735 -12.59295 -12.51836 -12.47895 -12.33839 -12.12434 -11.97078 -11.87615 -11.74988 -11.35611 -11.25204 -10.61195 -10.24265 -9.53034 -9.19668 -8.19010 -6.28772 0.37409 1.38417 1.41796 1.42713 1.54120 1.58348 1.69468 2.41208 2.89860 2.98868 3.14229 3.39661 3.52047 3.82300 3.97181 4.03357 4.11960 4.18245 4.20900 4.42590 4.49164 4.55788 4.72216 4.72977 4.74337 4.85041 5.00504 5.03115 5.11490 5.18973 5.20070 5.21993 5.33470 5.62374 5.70768 5.83828 6.05263 6.18480 6.47779 6.75209 6.84854 7.40297 8.91391 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.005950 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.396148 B = 4704.395739 C = 5989.533923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.148 4.148 3 C 0.078 3.922 4 N -0.536 5.536 5 C 0.212 3.788 6 C -0.523 4.523 7 H 0.059 0.941 8 C 0.008 3.992 9 N -0.930 5.930 10 Si 0.964 3.036 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.269 1.269 14 C 0.156 3.844 15 C 0.198 3.802 16 N -0.497 5.497 17 C -0.047 4.047 18 C -0.026 4.026 19 C -0.085 4.085 20 C -0.175 4.175 21 C -0.153 4.153 22 O -0.208 6.208 23 H 0.115 0.885 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.030 0.970 27 H 0.084 0.916 28 H -0.027 1.027 29 H 0.020 0.980 30 H 0.265 0.735 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.215 0.785 34 H 0.170 0.830 35 H 0.074 0.926 36 H 0.130 0.870 37 H 0.137 0.863 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.566 -1.397 -14.794 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.167 4.167 3 C -0.050 4.050 4 N -0.262 5.262 5 C 0.087 3.913 6 C -0.562 4.562 7 H 0.077 0.923 8 C -0.191 4.191 9 N -0.570 5.570 10 Si 0.789 3.211 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.193 1.193 14 C 0.027 3.973 15 C -0.008 4.008 16 N -0.228 5.228 17 C -0.186 4.186 18 C -0.080 4.080 19 C -0.103 4.103 20 C -0.212 4.212 21 C -0.190 4.190 22 O -0.095 6.095 23 H 0.133 0.867 24 H 0.114 0.886 25 H 0.123 0.877 26 H 0.048 0.952 27 H 0.102 0.898 28 H -0.009 1.009 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.231 0.769 34 H 0.187 0.813 35 H 0.093 0.907 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.188 -1.471 -14.764 18.583 hybrid contribution 0.101 0.247 1.242 1.271 sum 11.290 -1.224 -13.522 17.658 Atomic orbital electron populations 1.23926 0.95370 1.02537 1.00570 1.22800 0.96111 0.97970 0.99811 1.21305 0.94241 0.94989 0.94424 1.61982 1.16066 1.44766 1.03337 1.19422 0.93353 0.93760 0.84767 1.21418 0.99786 1.43313 0.91663 0.92300 1.25805 0.96455 0.95396 1.01409 1.70070 1.17055 1.48607 1.21316 0.85466 0.78578 0.78703 0.78390 1.19705 1.20692 1.19320 1.20244 0.91831 0.93728 0.91460 1.26113 0.85663 0.93590 0.95436 1.70442 1.26979 1.24202 1.01197 1.23486 0.91426 1.01273 1.02370 1.23176 0.99739 1.03950 0.81085 1.20723 0.85178 1.03934 1.00467 1.23108 1.03129 0.96253 0.98751 1.23185 0.95577 0.97289 1.02963 1.84393 1.34376 1.58010 1.32704 0.86660 0.88580 0.87736 0.95187 0.89800 1.00880 0.96210 0.92638 0.88429 0.90806 0.76874 0.81256 0.90741 0.85216 0.84503 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.11 14.32 67.79 0.97 -5.14 16 2 C -0.15 -5.52 8.72 25.65 0.22 -5.30 16 3 C 0.08 3.08 5.28 85.56 0.45 3.53 16 4 N -0.54 -24.11 4.37 -909.92 -3.97 -28.08 16 5 C 0.21 11.26 4.59 85.56 0.39 11.65 16 6 C -0.52 -29.61 8.58 25.60 0.22 -29.39 16 7 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 8 C 0.01 0.44 5.46 84.66 0.46 0.91 16 9 N -0.93 -55.38 13.29 21.45 0.28 -55.09 16 10 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 C 0.16 6.35 5.41 85.56 0.46 6.81 16 15 C 0.20 7.44 7.02 88.34 0.62 8.06 16 16 N -0.50 -17.29 10.17 -303.82 -3.09 -20.38 16 17 C -0.05 -1.30 11.80 83.39 0.98 -0.32 16 18 C -0.03 -0.74 6.85 24.79 0.17 -0.57 16 19 C -0.09 -1.57 6.25 -11.54 -0.07 -1.64 16 20 C -0.18 -3.23 10.18 30.62 0.31 -2.92 16 21 C -0.15 -2.44 10.24 30.62 0.31 -2.12 16 22 O -0.21 -7.54 10.55 -3.69 -0.04 -7.58 16 23 H 0.12 3.23 8.06 -2.91 -0.02 3.21 16 24 H 0.10 3.04 7.84 -2.91 -0.02 3.02 16 25 H 0.10 3.89 8.06 -2.91 -0.02 3.87 16 26 H 0.03 1.19 7.71 -2.38 -0.02 1.17 16 27 H 0.08 3.22 6.08 -2.39 -0.01 3.21 16 28 H -0.03 -1.49 8.00 -2.39 -0.02 -1.51 16 29 H 0.02 1.13 7.09 -2.38 -0.02 1.11 16 30 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 31 H 0.10 4.14 7.38 -2.39 -0.02 4.12 16 32 H 0.07 2.86 8.12 -2.39 -0.02 2.84 16 33 H 0.21 4.04 8.06 -2.91 -0.02 4.02 16 34 H 0.17 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 1.83 8.00 -2.39 -0.02 1.81 16 36 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -66.94 326.95 1.75 -65.19 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 1.03 Total: 16.05 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 5.51 Total: -16.42 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -6.78 Total: -103.55 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.04 Total: -7.58 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -66.94 1.75 -65.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292270968.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.139 kcal (2) G-P(sol) polarization free energy of solvation -66.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds