Wall clock time and date at job start Mon Mar 30 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.50698 * 109.47306 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99819 * 359.72687 * 4 3 2 6 6 C 1.38210 * 120.00075 * 179.76779 * 5 4 3 7 7 C 1.38251 * 119.99978 * 0.48172 * 6 5 4 8 8 C 1.38219 * 120.00095 * 359.79069 * 7 6 5 9 9 C 1.38213 * 120.00216 * 179.97438 * 4 3 2 10 10 C 1.50691 * 119.99754 * 0.02562 * 9 4 3 11 11 H 1.08998 * 109.82541 * 35.56958 * 10 9 4 12 12 C 1.54375 * 109.83376 * 274.58454 * 10 9 4 13 13 C 1.55306 * 102.25913 * 219.13455 * 12 10 9 14 14 C 1.54949 * 100.93902 * 34.12952 * 13 12 10 15 15 H 1.09007 * 110.30599 * 82.47678 * 14 13 12 16 16 C 1.50699 * 110.39390 * 204.59679 * 14 13 12 17 17 H 1.07994 * 119.99976 * 357.22417 * 16 14 13 18 18 C 1.37879 * 120.00096 * 177.21708 * 16 14 13 19 19 N 1.31508 * 120.00322 * 180.02562 * 18 16 14 20 20 Si 1.86797 * 119.99858 * 0.02562 * 18 16 14 21 21 H 1.48504 * 109.47086 * 90.00048 * 20 18 16 22 22 H 1.48499 * 109.47167 * 209.99824 * 20 18 16 23 23 H 1.48499 * 109.47540 * 330.00096 * 20 18 16 24 24 O 1.43238 * 109.82812 * 156.45372 * 10 9 4 25 25 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 26 26 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 28 28 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 29 29 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 30 30 H 1.08007 * 120.00096 * 359.97438 * 5 4 3 31 31 H 1.08006 * 120.00078 * 180.25278 * 6 5 4 32 32 H 1.08006 * 119.99995 * 179.76996 * 7 6 5 33 33 H 1.07997 * 120.00008 * 179.97438 * 8 7 6 34 34 H 1.09005 * 110.85067 * 337.32467 * 12 10 9 35 35 H 1.09000 * 110.85011 * 100.94319 * 12 10 9 36 36 H 1.09001 * 111.12034 * 276.21660 * 13 12 10 37 37 H 1.08998 * 111.16819 * 152.06818 * 13 12 10 38 38 H 0.96999 * 120.00230 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1071 -0.0617 0.0068 6 6 5.4849 -0.1709 0.0025 7 6 6.2686 0.9681 0.0022 8 6 5.6742 2.2159 0.0017 9 6 4.2959 2.3251 0.0002 10 6 3.6478 3.6856 -0.0003 11 1 2.7359 3.6608 0.5962 12 6 3.3178 4.1080 -1.4480 13 6 3.6618 5.6224 -1.4362 14 6 4.8636 5.6433 -0.4584 15 1 5.7820 5.3776 -0.9821 16 6 4.9998 7.0028 0.1774 17 1 4.3341 7.8028 -0.1109 18 6 5.9741 7.2252 1.1273 19 7 6.0926 8.4114 1.6825 20 14 7.1257 5.8415 1.6256 21 1 8.3256 5.8568 0.7507 22 1 7.5414 6.0282 3.0390 23 1 6.4260 4.5395 1.4833 24 8 4.5540 4.6557 0.5376 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 1.6887 1.8463 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 3.4949 -0.9515 0.0116 31 1 5.9494 -1.1460 0.0032 32 1 7.3453 0.8828 0.0026 33 1 6.2864 3.1056 0.0018 34 1 3.9455 3.5732 -2.1609 35 1 2.2613 3.9519 -1.6664 36 1 2.8301 6.2111 -1.0490 37 1 3.9558 5.9670 -2.4276 38 1 6.7777 8.5678 2.3511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310094799.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:12 Heat of formation + Delta-G solvation = -65.992682 kcal Electronic energy + Delta-G solvation = -20038.284780 eV Core-core repulsion = 17038.768311 eV Total energy + Delta-G solvation = -2999.516469 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.87586 -38.12485 -37.37746 -32.90218 -32.18059 -31.11577 -31.03746 -28.40415 -27.24375 -25.43316 -24.70780 -22.18643 -21.25174 -20.43816 -19.95656 -17.07502 -16.66454 -16.56659 -15.96533 -15.50694 -15.37926 -14.85034 -14.37282 -14.09511 -13.65160 -13.56531 -13.14779 -12.67459 -12.59659 -12.41161 -12.05906 -12.01631 -11.68091 -11.28579 -11.05669 -10.82165 -10.74351 -10.59684 -10.28478 -9.98442 -9.84154 -9.68903 -9.41826 -8.59177 -8.49090 -8.41275 -8.17138 -6.10956 -4.19615 1.53333 1.69281 3.37928 3.44888 3.61784 3.68105 3.97441 4.52977 4.75196 4.89931 5.04658 5.14827 5.16990 5.21543 5.22127 5.34965 5.37774 5.41949 5.44984 5.46494 5.56373 5.66681 5.87312 6.00293 6.07147 6.18912 6.19641 6.34376 6.41128 6.50974 6.59213 6.63896 6.80348 6.94005 7.08587 7.20146 7.26661 7.60608 8.25763 8.42759 8.90225 9.53191 10.99526 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023167 B = 0.006448 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.324153 B = 4341.194068 C = 5077.126224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.103 3.897 4 C -0.091 4.091 5 C -0.102 4.102 6 C -0.132 4.132 7 C -0.124 4.124 8 C -0.097 4.097 9 C -0.078 4.078 10 C 0.108 3.892 11 H 0.073 0.927 12 C -0.146 4.146 13 C -0.134 4.134 14 C 0.171 3.829 15 H 0.027 0.973 16 C -0.524 4.524 17 H 0.078 0.922 18 C 0.085 3.915 19 N -0.893 5.893 20 Si 0.863 3.137 21 H -0.284 1.284 22 H -0.292 1.292 23 H -0.216 1.216 24 O -0.366 6.366 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.127 0.873 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.132 0.868 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.091 -16.770 -5.052 18.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C 0.027 3.973 4 C -0.091 4.091 5 C -0.120 4.120 6 C -0.150 4.150 7 C -0.142 4.142 8 C -0.115 4.115 9 C -0.078 4.078 10 C 0.049 3.951 11 H 0.090 0.910 12 C -0.184 4.184 13 C -0.172 4.172 14 C 0.116 3.884 15 H 0.044 0.956 16 C -0.561 4.561 17 H 0.096 0.904 18 C -0.120 4.120 19 N -0.530 5.530 20 Si 0.689 3.311 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.139 1.139 24 O -0.286 6.286 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.145 0.855 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.150 0.850 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.813 -16.827 -4.724 18.758 hybrid contribution 0.401 -0.299 0.223 0.548 sum -6.411 -17.126 -4.500 18.832 Atomic orbital electron populations 1.22737 0.80985 1.02641 1.00163 1.87827 1.19602 1.27858 1.95507 1.21290 0.90581 0.84503 1.00890 1.19380 0.93477 0.93351 1.02926 1.20846 0.94374 0.97083 0.99736 1.21075 0.93853 0.98173 1.01864 1.21182 0.99677 0.92659 1.00721 1.21184 0.94451 0.97879 0.98002 1.20182 0.94069 0.94732 0.98843 1.21451 0.92925 0.86520 0.94199 0.90972 1.23110 1.01043 0.97974 0.96239 1.23148 1.00276 0.93446 1.00334 1.20984 0.92430 0.88364 0.86599 0.95555 1.21027 1.17613 0.93217 1.24230 0.90412 1.25036 0.96937 0.95390 0.94620 1.69919 1.33839 1.22119 1.27134 0.87119 0.80441 0.86076 0.77419 1.21093 1.21808 1.13878 1.88940 1.62864 1.37566 1.39245 0.93948 0.89679 0.93998 0.91836 0.91782 0.85498 0.86516 0.86403 0.85040 0.91270 0.91401 0.90881 0.91393 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.85 9.18 -35.23 -0.32 -5.17 16 3 C 0.10 1.35 5.12 36.00 0.18 1.53 16 4 C -0.09 -1.40 5.88 -104.62 -0.62 -2.02 16 5 C -0.10 -1.47 9.38 -39.58 -0.37 -1.84 16 6 C -0.13 -1.81 10.05 -39.59 -0.40 -2.21 16 7 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 8 C -0.10 -1.73 9.36 -39.58 -0.37 -2.10 16 9 C -0.08 -1.35 4.93 -104.63 -0.52 -1.87 16 10 C 0.11 1.98 3.23 -27.17 -0.09 1.90 16 11 H 0.07 1.26 6.89 -51.93 -0.36 0.90 16 12 C -0.15 -2.38 6.31 -24.79 -0.16 -2.53 16 13 C -0.13 -2.57 6.54 -24.48 -0.16 -2.73 16 14 C 0.17 4.02 2.68 -26.85 -0.07 3.95 16 15 H 0.03 0.63 7.63 -51.93 -0.40 0.23 16 16 C -0.52 -14.78 9.39 -34.44 -0.32 -15.10 16 17 H 0.08 2.34 8.01 -52.49 -0.42 1.92 16 18 C 0.08 2.47 5.47 -17.82 -0.10 2.37 16 19 N -0.89 -27.48 13.96 55.43 0.77 -26.71 16 20 Si 0.86 21.72 27.07 -169.99 -4.60 17.11 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.22 -5.20 4.18 56.52 0.24 -4.96 16 24 O -0.37 -8.44 6.59 -35.23 -0.23 -8.67 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.76 7.61 -51.93 -0.40 0.37 16 29 H 0.06 0.82 7.52 -51.93 -0.39 0.43 16 30 H 0.13 1.67 7.01 -52.48 -0.37 1.30 16 31 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 32 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.13 2.57 6.14 -52.49 -0.32 2.25 16 34 H 0.07 1.09 7.84 -51.93 -0.41 0.68 16 35 H 0.07 0.92 7.84 -51.93 -0.41 0.52 16 36 H 0.07 1.43 8.05 -51.93 -0.42 1.01 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 306.13 15.07 4.61 4.61 Total: -1.00 -31.58 306.13 -7.76 -39.34 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.72 Total: 1.03 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -2.27 Total: -21.55 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.77 Total: -26.71 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.56 Total: -13.84 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.60 Total: 17.11 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.58 -7.76 -39.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310094799.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.656 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds