Wall clock time and date at job start Mon Mar 30 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.50698 * 109.47306 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99819 * 359.72687 * 4 3 2 6 6 C 1.38210 * 120.00075 * 179.76779 * 5 4 3 7 7 C 1.38251 * 119.99978 * 0.48172 * 6 5 4 8 8 C 1.38219 * 120.00095 * 359.79069 * 7 6 5 9 9 C 1.38213 * 120.00216 * 179.97438 * 4 3 2 10 10 C 1.50691 * 119.99754 * 0.02562 * 9 4 3 11 11 H 1.08998 * 109.82541 * 35.56958 * 10 9 4 12 12 C 1.54375 * 109.83376 * 274.58454 * 10 9 4 13 13 C 1.55306 * 102.25913 * 219.13455 * 12 10 9 14 14 C 1.54949 * 100.93902 * 34.12952 * 13 12 10 15 15 H 1.09007 * 110.30599 * 82.47678 * 14 13 12 16 16 C 1.50699 * 110.39390 * 204.59679 * 14 13 12 17 17 H 1.07994 * 119.99976 * 357.22417 * 16 14 13 18 18 C 1.37879 * 120.00096 * 177.21708 * 16 14 13 19 19 N 1.31508 * 120.00322 * 180.02562 * 18 16 14 20 20 Si 1.86797 * 119.99858 * 0.02562 * 18 16 14 21 21 H 1.48504 * 109.47086 * 90.00048 * 20 18 16 22 22 H 1.48499 * 109.47167 * 209.99824 * 20 18 16 23 23 H 1.48499 * 109.47540 * 330.00096 * 20 18 16 24 24 O 1.43238 * 109.82812 * 156.45372 * 10 9 4 25 25 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 26 26 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 28 28 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 29 29 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 30 30 H 1.08007 * 120.00096 * 359.97438 * 5 4 3 31 31 H 1.08006 * 120.00078 * 180.25278 * 6 5 4 32 32 H 1.08006 * 119.99995 * 179.76996 * 7 6 5 33 33 H 1.07997 * 120.00008 * 179.97438 * 8 7 6 34 34 H 1.09005 * 110.85067 * 337.32467 * 12 10 9 35 35 H 1.09000 * 110.85011 * 100.94319 * 12 10 9 36 36 H 1.09001 * 111.12034 * 276.21660 * 13 12 10 37 37 H 1.08998 * 111.16819 * 152.06818 * 13 12 10 38 38 H 0.96999 * 120.00230 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1071 -0.0617 0.0068 6 6 5.4849 -0.1709 0.0025 7 6 6.2686 0.9681 0.0022 8 6 5.6742 2.2159 0.0017 9 6 4.2959 2.3251 0.0002 10 6 3.6478 3.6856 -0.0003 11 1 2.7359 3.6608 0.5962 12 6 3.3178 4.1080 -1.4480 13 6 3.6618 5.6224 -1.4362 14 6 4.8636 5.6433 -0.4584 15 1 5.7820 5.3776 -0.9821 16 6 4.9998 7.0028 0.1774 17 1 4.3341 7.8028 -0.1109 18 6 5.9741 7.2252 1.1273 19 7 6.0926 8.4114 1.6825 20 14 7.1257 5.8415 1.6256 21 1 8.3256 5.8568 0.7507 22 1 7.5414 6.0282 3.0390 23 1 6.4260 4.5395 1.4833 24 8 4.5540 4.6557 0.5376 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 1.6887 1.8463 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 3.4949 -0.9515 0.0116 31 1 5.9494 -1.1460 0.0032 32 1 7.3453 0.8828 0.0026 33 1 6.2864 3.1056 0.0018 34 1 3.9455 3.5732 -2.1609 35 1 2.2613 3.9519 -1.6664 36 1 2.8301 6.2111 -1.0490 37 1 3.9558 5.9670 -2.4276 38 1 6.7777 8.5678 2.3511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310094799.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:12 Heat of formation + Delta-G solvation = -85.181517 kcal Electronic energy + Delta-G solvation = -20039.116870 eV Core-core repulsion = 17038.768311 eV Total energy + Delta-G solvation = -3000.348559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.16158 -39.47457 -38.38600 -34.87393 -33.58867 -32.67771 -32.29440 -30.04134 -28.14813 -26.43292 -26.33302 -23.61513 -22.42346 -22.09264 -21.34706 -18.99605 -17.98366 -17.74643 -16.92693 -16.83533 -16.79856 -16.27017 -15.69945 -15.26825 -15.14492 -14.92121 -14.67633 -14.26371 -14.01403 -13.67459 -13.49682 -13.10841 -12.86232 -12.73342 -12.58112 -12.29752 -12.17608 -11.95546 -11.83378 -11.58117 -11.46599 -11.30099 -10.77508 -10.74926 -10.10649 -9.64376 -9.45898 -8.35804 -6.47967 0.39277 0.50903 1.34744 1.38656 1.67832 2.41646 2.76471 2.78302 2.95532 3.50360 3.72593 3.82439 3.91160 4.11038 4.18312 4.23679 4.32758 4.39153 4.41930 4.48763 4.56902 4.62023 4.63412 4.77368 4.84014 4.90194 4.90686 5.04932 5.09672 5.11733 5.21059 5.44410 5.53367 5.53714 5.65414 5.75275 6.11582 6.19761 6.21998 6.47694 6.73406 7.29350 8.78188 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023167 B = 0.006448 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.324153 B = 4341.194068 C = 5077.126224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.105 3.895 4 C -0.094 4.094 5 C -0.105 4.105 6 C -0.124 4.124 7 C -0.128 4.128 8 C -0.124 4.124 9 C -0.094 4.094 10 C 0.100 3.900 11 H 0.081 0.919 12 C -0.129 4.129 13 C -0.132 4.132 14 C 0.171 3.829 15 H 0.025 0.975 16 C -0.531 4.531 17 H 0.043 0.957 18 C 0.028 3.972 19 N -0.941 5.941 20 Si 0.925 3.075 21 H -0.276 1.276 22 H -0.297 1.297 23 H -0.202 1.202 24 O -0.390 6.390 25 H 0.047 0.953 26 H 0.102 0.898 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.142 0.858 31 H 0.149 0.851 32 H 0.137 0.863 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.834 -20.169 -5.929 22.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.029 3.971 4 C -0.094 4.094 5 C -0.122 4.122 6 C -0.141 4.141 7 C -0.146 4.146 8 C -0.142 4.142 9 C -0.095 4.095 10 C 0.042 3.958 11 H 0.098 0.902 12 C -0.167 4.167 13 C -0.170 4.170 14 C 0.115 3.885 15 H 0.043 0.957 16 C -0.568 4.568 17 H 0.061 0.939 18 C -0.171 4.171 19 N -0.581 5.581 20 Si 0.749 3.251 21 H -0.201 1.201 22 H -0.224 1.224 23 H -0.124 1.124 24 O -0.311 6.311 25 H 0.066 0.934 26 H 0.120 0.880 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.159 0.841 31 H 0.167 0.833 32 H 0.155 0.845 33 H 0.125 0.875 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.577 -20.241 -5.620 22.331 hybrid contribution 0.527 0.711 0.473 1.003 sum -7.050 -19.530 -5.147 21.392 Atomic orbital electron populations 1.22962 0.79161 1.04100 1.00948 1.87789 1.21559 1.27364 1.95646 1.21248 0.89309 0.85126 1.01428 1.19584 0.94713 0.93006 1.02147 1.21120 0.94945 0.97206 0.98974 1.21440 0.93652 0.99131 0.99900 1.21408 1.00927 0.92069 1.00206 1.21145 0.94691 0.98187 1.00179 1.20058 0.94147 0.94567 1.00704 1.21681 0.92385 0.86236 0.95470 0.90161 1.23053 1.03350 0.95178 0.95084 1.23075 0.98150 0.95899 0.99839 1.20793 0.94396 0.86200 0.87064 0.95698 1.21365 1.16466 0.95101 1.23859 0.93909 1.25894 0.98794 0.97541 0.94876 1.70051 1.35218 1.24263 1.28542 0.86168 0.78621 0.83731 0.76581 1.20147 1.22383 1.12395 1.88806 1.64182 1.38433 1.39676 0.93442 0.87976 0.92929 0.90632 0.91796 0.84069 0.83291 0.84517 0.87508 0.90361 0.87986 0.91719 0.89836 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 113.37 1.25 1.60 16 2 O -0.40 -8.80 9.18 -148.98 -1.37 -10.17 16 3 C 0.10 2.44 5.12 71.24 0.36 2.80 16 4 C -0.09 -2.64 5.88 -19.87 -0.12 -2.76 16 5 C -0.10 -2.66 9.38 22.27 0.21 -2.45 16 6 C -0.12 -2.95 10.05 22.27 0.22 -2.73 16 7 C -0.13 -3.55 10.05 22.27 0.22 -3.33 16 8 C -0.12 -4.24 9.36 22.27 0.21 -4.03 16 9 C -0.09 -3.11 4.93 -19.87 -0.10 -3.20 16 10 C 0.10 3.53 3.23 30.31 0.10 3.63 16 11 H 0.08 2.66 6.89 -2.39 -0.02 2.65 16 12 C -0.13 -3.88 6.31 31.85 0.20 -3.68 16 13 C -0.13 -4.92 6.54 32.05 0.21 -4.72 16 14 C 0.17 8.06 2.68 30.51 0.08 8.14 16 15 H 0.03 1.19 7.63 -2.38 -0.02 1.17 16 16 C -0.53 -30.90 9.39 25.60 0.24 -30.66 16 17 H 0.04 2.71 8.01 -2.91 -0.02 2.68 16 18 C 0.03 1.70 5.47 84.66 0.46 2.16 16 19 N -0.94 -60.11 13.96 21.45 0.30 -59.81 16 20 Si 0.92 46.09 27.07 68.60 1.86 47.95 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 22 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 23 H -0.20 -9.55 4.18 99.48 0.42 -9.13 16 24 O -0.39 -17.88 6.59 -148.98 -0.98 -18.86 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.08 1.55 7.61 -2.39 -0.02 1.53 16 29 H 0.06 1.48 7.52 -2.39 -0.02 1.46 16 30 H 0.14 3.18 7.01 -2.91 -0.02 3.16 16 31 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 32 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 33 H 0.11 4.13 6.14 -2.91 -0.02 4.11 16 34 H 0.08 2.24 7.84 -2.38 -0.02 2.22 16 35 H 0.10 2.38 7.84 -2.39 -0.02 2.36 16 36 H 0.06 2.50 8.05 -2.39 -0.02 2.48 16 37 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -70.17 306.13 4.11 -66.07 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.75 Total: 14.06 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 3.56 Total: -39.23 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.30 Total: -59.81 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -2.35 Total: -29.02 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.86 Total: 47.95 kcal Total: -70.17 4.11 -66.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310094799.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.116 kcal (2) G-P(sol) polarization free energy of solvation -70.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds