Wall clock time and date at job start Mon Mar 30 2020 06:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99871 * 2 1 4 4 C 1.50701 * 109.47082 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.99468 * 270.01364 * 4 3 2 6 6 C 1.38210 * 119.99814 * 179.97438 * 5 4 3 7 7 C 1.38261 * 120.00238 * 359.71164 * 6 5 4 8 8 C 1.38223 * 119.99536 * 0.54217 * 7 6 5 9 9 C 1.50696 * 119.99758 * 179.74618 * 8 7 6 10 10 H 1.08999 * 110.33031 * 203.93116 * 9 8 7 11 11 C 1.54476 * 110.46326 * 81.62013 * 9 8 7 12 12 C 1.54509 * 104.06406 * 217.13920 * 11 9 8 13 13 C 1.54486 * 104.06112 * 359.97438 * 12 11 9 14 14 H 1.08995 * 110.46591 * 265.10368 * 13 12 11 15 15 C 1.50698 * 110.37142 * 142.80589 * 13 12 11 16 16 H 1.08005 * 119.99819 * 3.17151 * 15 13 12 17 17 C 1.37875 * 120.00046 * 183.16492 * 15 13 12 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 O 1.44420 * 110.37668 * 326.18536 * 9 8 7 24 24 C 1.38212 * 120.00352 * 89.99838 * 4 3 2 25 25 H 1.09000 * 109.47197 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47703 * 300.00326 * 1 2 3 27 27 H 1.08996 * 109.47120 * 60.00558 * 1 2 3 28 28 H 1.08999 * 109.47454 * 59.99367 * 3 2 1 29 29 H 1.09000 * 109.46991 * 299.99430 * 3 2 1 30 30 H 1.07999 * 120.00148 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.99912 * 179.97438 * 6 5 4 32 32 H 1.07991 * 120.00554 * 180.29563 * 7 6 5 33 33 H 1.08996 * 110.51384 * 335.78901 * 11 9 8 34 34 H 1.09010 * 110.51349 * 98.36241 * 11 9 8 35 35 H 1.09005 * 110.51229 * 241.35907 * 12 11 9 36 36 H 1.08994 * 110.51199 * 118.64611 * 12 11 9 37 37 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 38 38 H 1.07996 * 119.99583 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2020 1.1314 1.1965 6 6 5.5797 1.0218 1.1960 7 6 6.2680 0.9612 -0.0016 8 6 5.5791 1.0215 -1.1983 9 6 6.3297 0.9612 -2.5037 10 1 5.7467 1.4279 -3.2977 11 6 6.6610 -0.5027 -2.8690 12 6 8.0648 -0.4215 -3.5094 13 6 8.4153 1.0821 -3.4557 14 1 8.1535 1.5683 -4.3955 15 6 9.8812 1.2688 -3.1601 16 1 10.5280 0.4084 -3.0714 17 6 10.3966 2.5379 -3.0029 18 7 9.6089 3.5855 -3.1105 19 14 12.2137 2.7693 -2.6371 20 1 12.5132 4.2186 -2.5136 21 1 13.0189 2.1895 -3.7420 22 1 12.5538 2.0838 -1.3644 23 8 7.6140 1.6092 -2.3756 24 6 4.2010 1.1321 -1.1978 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6885 1.8465 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.6640 1.1741 2.1320 31 1 6.1184 0.9792 2.1311 32 1 7.3441 0.8707 -0.0020 33 1 6.6849 -1.1238 -1.9737 34 1 5.9351 -0.8918 -3.5832 35 1 8.0343 -0.7695 -4.5419 36 1 8.7828 -1.0023 -2.9306 37 1 8.6654 3.4654 -3.3008 38 1 3.6622 1.1745 -2.1329 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310130443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:19 Heat of formation + Delta-G solvation = -78.099204 kcal Electronic energy + Delta-G solvation = -19399.425682 eV Core-core repulsion = 16399.384235 eV Total energy + Delta-G solvation = -3000.041447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.59734 -38.23429 -37.32212 -33.06627 -31.84324 -31.32864 -30.87834 -27.69565 -27.20788 -25.33427 -24.35292 -22.21940 -21.81417 -20.37961 -19.74203 -17.20671 -16.56006 -16.33201 -16.11490 -15.44277 -15.38772 -14.71312 -14.35878 -13.70929 -13.68311 -13.56331 -12.92562 -12.77516 -12.52683 -12.44689 -12.35203 -11.63580 -11.54124 -11.25962 -10.86627 -10.78388 -10.58609 -10.42750 -10.32777 -10.03697 -9.87591 -9.83783 -8.90472 -8.60506 -8.53067 -8.35537 -8.17950 -6.35474 -4.13985 1.52394 1.63023 3.44548 3.47168 3.62871 3.65620 4.17856 4.53401 4.73589 4.84433 5.01783 5.12287 5.13972 5.18481 5.28332 5.32948 5.41072 5.43209 5.51351 5.53669 5.66657 5.75231 5.82482 6.03147 6.13819 6.25401 6.27823 6.38226 6.53679 6.66032 6.68836 6.73299 6.79488 6.96291 7.02936 7.25869 7.26745 8.01679 8.27847 8.45997 8.87822 9.68004 11.05619 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.034340 B = 0.004344 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.181742 B = 6444.646666 C = 6794.733377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.107 3.893 4 C -0.102 4.102 5 C -0.106 4.106 6 C -0.127 4.127 7 C -0.080 4.080 8 C -0.068 4.068 9 C 0.103 3.897 10 H 0.058 0.942 11 C -0.142 4.142 12 C -0.138 4.138 13 C 0.187 3.813 14 H 0.018 0.982 15 C -0.606 4.606 16 H 0.057 0.943 17 C 0.031 3.969 18 N -0.889 5.889 19 Si 1.069 2.931 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.287 1.287 23 O -0.359 6.359 24 C -0.095 4.095 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.279 0.721 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.003 -5.700 5.901 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.031 3.969 4 C -0.103 4.103 5 C -0.125 4.125 6 C -0.145 4.145 7 C -0.098 4.098 8 C -0.068 4.068 9 C 0.044 3.956 10 H 0.076 0.924 11 C -0.180 4.180 12 C -0.176 4.176 13 C 0.132 3.868 14 H 0.036 0.964 15 C -0.643 4.643 16 H 0.075 0.925 17 C -0.178 4.178 18 N -0.524 5.524 19 Si 0.897 3.103 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.213 1.213 23 O -0.278 6.278 24 C -0.113 4.113 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.680 -4.558 6.326 15.746 hybrid contribution -1.558 -1.137 -0.420 1.974 sum -15.238 -5.695 5.906 17.306 Atomic orbital electron populations 1.22742 0.81345 1.02687 0.99873 1.87998 1.19291 1.27782 1.95367 1.21320 0.90208 0.84774 1.00616 1.19377 0.93413 1.03875 0.93585 1.20922 0.94345 1.00219 0.96975 1.21142 0.94019 1.01175 0.98160 1.21218 1.01080 0.96146 0.91373 1.19860 0.92938 0.98693 0.95307 1.21616 0.88953 0.92707 0.92350 0.92375 1.22923 0.97909 0.96677 1.00485 1.22923 0.94779 1.00599 0.99314 1.20726 0.91850 0.87460 0.86789 0.96420 1.21902 0.90916 0.95235 1.56223 0.92518 1.25878 1.06439 0.92274 0.93159 1.70667 1.08005 1.31954 1.41767 0.83562 0.74061 0.76173 0.76514 1.20702 1.21371 1.21331 1.89500 1.20008 1.65146 1.53194 1.20788 0.93476 0.99718 0.97307 0.89686 0.94180 0.94099 0.92611 0.92556 0.86500 0.86049 0.84875 0.91626 0.91985 0.92622 0.91482 0.90925 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.85 10.69 -35.23 -0.38 -5.23 16 3 C 0.11 1.26 6.06 36.01 0.22 1.48 16 4 C -0.10 -1.49 5.51 -104.62 -0.58 -2.07 16 5 C -0.11 -1.51 9.70 -39.58 -0.38 -1.90 16 6 C -0.13 -1.96 10.05 -39.58 -0.40 -2.35 16 7 C -0.08 -1.48 9.37 -39.58 -0.37 -1.85 16 8 C -0.07 -1.26 4.94 -104.62 -0.52 -1.78 16 9 C 0.10 2.10 3.49 -27.11 -0.09 2.00 16 10 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 11 C -0.14 -2.65 6.62 -25.16 -0.17 -2.82 16 12 C -0.14 -2.94 6.61 -25.16 -0.17 -3.11 16 13 C 0.19 4.85 2.66 -27.10 -0.07 4.78 16 14 H 0.02 0.49 8.05 -51.93 -0.42 0.08 16 15 C -0.61 -17.34 8.78 -34.44 -0.30 -17.64 16 16 H 0.06 1.59 7.59 -52.48 -0.40 1.19 16 17 C 0.03 0.90 5.42 -17.82 -0.10 0.80 16 18 N -0.89 -27.50 13.56 55.43 0.75 -26.75 16 19 Si 1.07 25.32 29.90 -169.99 -5.08 20.23 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 O -0.36 -9.21 9.05 -35.23 -0.32 -9.53 16 24 C -0.09 -1.52 9.35 -39.58 -0.37 -1.89 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 29 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 32 H 0.13 2.68 7.63 -52.49 -0.40 2.28 16 33 H 0.06 1.19 7.87 -51.93 -0.41 0.78 16 34 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.45 7.73 -51.93 -0.40 1.05 16 37 H 0.28 8.74 6.58 -40.82 -0.27 8.47 16 38 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 318.67 15.07 4.80 4.80 Total: -1.00 -32.35 318.67 -8.14 -40.49 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.73 Total: 0.96 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -2.18 Total: -24.98 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.75 Total: -26.75 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.70 Total: -14.76 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.35 -8.14 -40.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310130443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.611 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds