Wall clock time and date at job start Mon Mar 30 2020 06:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99871 * 2 1 4 4 C 1.50701 * 109.47082 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.99468 * 270.01364 * 4 3 2 6 6 C 1.38210 * 119.99814 * 179.97438 * 5 4 3 7 7 C 1.38261 * 120.00238 * 359.71164 * 6 5 4 8 8 C 1.38223 * 119.99536 * 0.54217 * 7 6 5 9 9 C 1.50696 * 119.99758 * 179.74618 * 8 7 6 10 10 H 1.08999 * 110.33031 * 203.93116 * 9 8 7 11 11 C 1.54476 * 110.46326 * 81.62013 * 9 8 7 12 12 C 1.54509 * 104.06406 * 217.13920 * 11 9 8 13 13 C 1.54486 * 104.06112 * 359.97438 * 12 11 9 14 14 H 1.08995 * 110.46591 * 265.10368 * 13 12 11 15 15 C 1.50698 * 110.37142 * 142.80589 * 13 12 11 16 16 H 1.08005 * 119.99819 * 3.17151 * 15 13 12 17 17 C 1.37875 * 120.00046 * 183.16492 * 15 13 12 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 O 1.44420 * 110.37668 * 326.18536 * 9 8 7 24 24 C 1.38212 * 120.00352 * 89.99838 * 4 3 2 25 25 H 1.09000 * 109.47197 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47703 * 300.00326 * 1 2 3 27 27 H 1.08996 * 109.47120 * 60.00558 * 1 2 3 28 28 H 1.08999 * 109.47454 * 59.99367 * 3 2 1 29 29 H 1.09000 * 109.46991 * 299.99430 * 3 2 1 30 30 H 1.07999 * 120.00148 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.99912 * 179.97438 * 6 5 4 32 32 H 1.07991 * 120.00554 * 180.29563 * 7 6 5 33 33 H 1.08996 * 110.51384 * 335.78901 * 11 9 8 34 34 H 1.09010 * 110.51349 * 98.36241 * 11 9 8 35 35 H 1.09005 * 110.51229 * 241.35907 * 12 11 9 36 36 H 1.08994 * 110.51199 * 118.64611 * 12 11 9 37 37 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 38 38 H 1.07996 * 119.99583 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2020 1.1314 1.1965 6 6 5.5797 1.0218 1.1960 7 6 6.2680 0.9612 -0.0016 8 6 5.5791 1.0215 -1.1983 9 6 6.3297 0.9612 -2.5037 10 1 5.7467 1.4279 -3.2977 11 6 6.6610 -0.5027 -2.8690 12 6 8.0648 -0.4215 -3.5094 13 6 8.4153 1.0821 -3.4557 14 1 8.1535 1.5683 -4.3955 15 6 9.8812 1.2688 -3.1601 16 1 10.5280 0.4084 -3.0714 17 6 10.3966 2.5379 -3.0029 18 7 9.6089 3.5855 -3.1105 19 14 12.2137 2.7693 -2.6371 20 1 12.5132 4.2186 -2.5136 21 1 13.0189 2.1895 -3.7420 22 1 12.5538 2.0838 -1.3644 23 8 7.6140 1.6092 -2.3756 24 6 4.2010 1.1321 -1.1978 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6885 1.8465 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.6640 1.1741 2.1320 31 1 6.1184 0.9792 2.1311 32 1 7.3441 0.8707 -0.0020 33 1 6.6849 -1.1238 -1.9737 34 1 5.9351 -0.8918 -3.5832 35 1 8.0343 -0.7695 -4.5419 36 1 8.7828 -1.0023 -2.9306 37 1 8.6654 3.4654 -3.3008 38 1 3.6622 1.1745 -2.1329 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310130443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:19 Heat of formation + Delta-G solvation = -97.716516 kcal Electronic energy + Delta-G solvation = -19400.276352 eV Core-core repulsion = 16399.384235 eV Total energy + Delta-G solvation = -3000.892118 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.97022 -39.67414 -38.39456 -35.07447 -33.23184 -32.86815 -32.43462 -29.36989 -28.12181 -26.30212 -26.18655 -23.87300 -23.15016 -22.10530 -21.16914 -19.23677 -17.71981 -17.39475 -17.27748 -16.80871 -16.53737 -16.16186 -15.82030 -15.60610 -15.12858 -15.00060 -14.64505 -14.33478 -13.81121 -13.57735 -13.44012 -13.14151 -12.82198 -12.63973 -12.40902 -12.35092 -12.22909 -11.94384 -11.90838 -11.78778 -11.50927 -10.85118 -10.68847 -10.64140 -10.28689 -9.83374 -9.63492 -8.66721 -6.45807 0.28642 0.38603 1.51972 1.61016 1.80218 2.55194 2.57549 2.99861 3.19637 3.47403 3.72842 3.82679 3.93710 3.97260 4.03708 4.18454 4.26546 4.31039 4.38949 4.42506 4.53307 4.57233 4.60003 4.62996 4.74854 4.85355 4.87555 4.88009 5.03378 5.06426 5.12510 5.31537 5.50465 5.54616 5.68061 5.90959 6.01209 6.07816 6.21704 6.41068 6.59917 7.46266 8.73456 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.034340 B = 0.004344 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.181742 B = 6444.646666 C = 6794.733377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.108 3.892 4 C -0.101 4.101 5 C -0.101 4.101 6 C -0.125 4.125 7 C -0.109 4.109 8 C -0.089 4.089 9 C 0.095 3.905 10 H 0.061 0.939 11 C -0.129 4.129 12 C -0.131 4.131 13 C 0.177 3.823 14 H -0.008 1.008 15 C -0.623 4.623 16 H 0.057 0.943 17 C -0.022 4.022 18 N -0.918 5.918 19 Si 1.118 2.882 20 H -0.283 1.283 21 H -0.264 1.264 22 H -0.272 1.272 23 O -0.389 6.389 24 C -0.100 4.100 25 H 0.094 0.906 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.262 0.738 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.665 -6.602 7.049 19.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.032 3.968 4 C -0.101 4.101 5 C -0.119 4.119 6 C -0.143 4.143 7 C -0.127 4.127 8 C -0.090 4.090 9 C 0.037 3.963 10 H 0.079 0.921 11 C -0.167 4.167 12 C -0.169 4.169 13 C 0.122 3.878 14 H 0.010 0.990 15 C -0.660 4.660 16 H 0.075 0.925 17 C -0.223 4.223 18 N -0.554 5.554 19 Si 0.939 3.061 20 H -0.208 1.208 21 H -0.189 1.189 22 H -0.197 1.197 23 O -0.310 6.310 24 C -0.118 4.118 25 H 0.113 0.887 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.169 0.831 31 H 0.161 0.839 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.367 -5.488 7.466 17.944 hybrid contribution -1.194 -0.889 -0.748 1.666 sum -16.561 -6.376 6.718 18.975 Atomic orbital electron populations 1.22951 0.79265 1.03830 1.01123 1.87942 1.21569 1.28066 1.95641 1.21357 0.88061 0.85023 1.02355 1.19792 0.95366 1.01923 0.93002 1.21325 0.93768 0.98381 0.98393 1.21376 0.94937 1.00217 0.97793 1.21104 0.99807 0.98807 0.92969 1.19782 0.94023 1.00955 0.94189 1.21841 0.87067 0.93348 0.94009 0.92107 1.22861 0.96877 0.95714 1.01218 1.22817 0.96239 0.97091 1.00780 1.20647 0.91078 0.90293 0.85792 0.99005 1.22331 0.92776 0.95402 1.55540 0.92462 1.27453 1.10428 0.92208 0.92246 1.70802 1.07340 1.32757 1.44460 0.82952 0.69216 0.76268 0.77691 1.20844 1.18875 1.19742 1.89411 1.22478 1.66346 1.52732 1.20957 0.92393 0.99554 0.98891 0.88715 0.92630 0.93116 0.90320 0.91444 0.83118 0.83869 0.88024 0.91155 0.88769 0.90611 0.92124 0.92739 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -9.11 10.69 -148.98 -1.59 -10.70 16 3 C 0.11 2.18 6.06 71.24 0.43 2.61 16 4 C -0.10 -2.69 5.51 -19.86 -0.11 -2.80 16 5 C -0.10 -2.59 9.70 22.27 0.22 -2.37 16 6 C -0.13 -3.73 10.05 22.27 0.22 -3.51 16 7 C -0.11 -4.10 9.37 22.27 0.21 -3.89 16 8 C -0.09 -3.35 4.94 -19.86 -0.10 -3.45 16 9 C 0.10 3.99 3.49 30.35 0.11 4.10 16 10 H 0.06 2.45 8.07 -2.39 -0.02 2.43 16 11 C -0.13 -4.75 6.62 31.61 0.21 -4.55 16 12 C -0.13 -5.63 6.61 31.61 0.21 -5.42 16 13 C 0.18 9.57 2.66 30.35 0.08 9.65 16 14 H -0.01 -0.44 8.05 -2.39 -0.02 -0.46 16 15 C -0.62 -36.76 8.78 25.60 0.22 -36.54 16 16 H 0.06 3.27 7.59 -2.91 -0.02 3.25 16 17 C -0.02 -1.32 5.42 84.65 0.46 -0.86 16 18 N -0.92 -58.89 13.56 21.45 0.29 -58.60 16 19 Si 1.12 51.45 29.90 68.60 2.05 53.50 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 21 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 O -0.39 -20.98 9.05 -148.98 -1.35 -22.32 16 24 C -0.10 -3.10 9.35 22.27 0.21 -2.89 16 25 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.08 1.23 8.09 -2.39 -0.02 1.21 16 29 H 0.07 1.21 8.08 -2.39 -0.02 1.19 16 30 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 31 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 32 H 0.10 4.38 7.63 -2.92 -0.02 4.36 16 33 H 0.07 2.51 7.87 -2.39 -0.02 2.50 16 34 H 0.09 2.85 8.14 -2.38 -0.02 2.83 16 35 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 36 H 0.06 2.64 7.73 -2.39 -0.02 2.62 16 37 H 0.26 17.32 6.58 -92.71 -0.61 16.72 16 38 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -72.78 318.67 4.20 -68.57 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 1.18 Total: 17.88 kcal Atomic # 6 Polarization: -51.95 SS G_CDS: 3.62 Total: -48.33 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.29 Total: -58.60 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -2.94 Total: -33.03 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.05 Total: 53.50 kcal Total: -72.78 4.20 -68.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310130443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.144 kcal (2) G-P(sol) polarization free energy of solvation -72.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds