Wall clock time and date at job start Mon Mar 30 2020 06:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47025 * 2 1 4 4 C 1.35906 * 117.00007 * 180.02562 * 3 2 1 5 5 C 1.38752 * 120.05336 * 0.02562 * 4 3 2 6 6 C 1.38130 * 119.94000 * 180.02562 * 5 4 3 7 7 C 1.38279 * 120.05690 * 359.97438 * 6 5 4 8 8 C 1.38249 * 120.11162 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.97153 * 180.02562 * 8 7 6 10 10 H 1.09002 * 110.42083 * 204.14679 * 9 8 7 11 11 C 1.54480 * 110.37651 * 81.82900 * 9 8 7 12 12 C 1.54681 * 104.08021 * 217.09811 * 11 9 8 13 13 C 1.54480 * 103.98290 * 0.13747 * 12 11 9 14 14 H 1.09000 * 110.37288 * 264.96360 * 13 12 11 15 15 C 1.50696 * 110.37071 * 142.73250 * 13 12 11 16 16 H 1.07999 * 120.00319 * 1.55519 * 15 13 12 17 17 C 1.37885 * 119.99717 * 181.54902 * 15 13 12 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 O 1.44428 * 104.89697 * 23.84926 * 13 12 11 24 24 C 1.38164 * 120.05651 * 0.27471 * 8 7 6 25 25 H 1.08996 * 109.46931 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47198 * 299.99588 * 1 2 3 27 27 H 1.08994 * 109.47619 * 59.99483 * 1 2 3 28 28 H 1.09004 * 109.47198 * 240.00412 * 2 1 3 29 29 H 1.09003 * 109.47631 * 120.00282 * 2 1 3 30 30 H 1.07991 * 120.03203 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.96787 * 179.97438 * 6 5 4 32 32 H 1.08003 * 119.94619 * 180.02562 * 7 6 5 33 33 H 1.08994 * 110.50990 * 335.83904 * 11 9 8 34 34 H 1.09006 * 110.50456 * 98.40933 * 11 9 8 35 35 H 1.08998 * 110.61443 * 241.48533 * 12 11 9 36 36 H 1.09002 * 110.48816 * 118.72444 * 12 11 9 37 37 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.02808 * 179.74624 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4258 -0.0016 6 6 5.5689 0.6095 -0.0016 7 6 6.0962 1.8879 -0.0011 8 6 5.2550 2.9850 -0.0001 9 6 5.8330 4.3768 -0.0001 10 1 5.1184 5.0854 0.4186 11 6 6.2282 4.7950 -1.4337 12 6 7.5278 5.6119 -1.2427 13 6 7.7639 5.5861 0.2838 14 1 7.3466 6.4800 0.7474 15 6 9.2365 5.4786 0.5851 16 1 9.9529 5.4573 -0.2228 17 6 9.6693 5.4076 1.8923 18 7 10.9545 5.3144 2.1553 19 14 8.4301 5.4440 3.2896 20 1 8.1938 6.8499 3.7054 21 1 7.1519 4.8411 2.8335 22 1 8.9596 4.6697 4.4409 23 8 7.0686 4.4081 0.7472 24 6 3.8850 2.8067 0.0062 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 3.7886 -0.5727 -0.0016 31 1 6.2280 -0.2460 -0.0020 32 1 7.1669 2.0294 -0.0015 33 1 6.4153 3.9158 -2.0501 34 1 5.4494 5.4140 -1.8793 35 1 7.3922 6.6358 -1.5909 36 1 8.3576 5.1364 -1.7655 37 1 11.2589 5.2648 3.0750 38 1 3.2283 3.6641 0.0112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310174063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:06 Heat of formation + Delta-G solvation = -81.667723 kcal Electronic energy + Delta-G solvation = -19478.558636 eV Core-core repulsion = 16478.362446 eV Total energy + Delta-G solvation = -3000.196190 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.25926 -40.14635 -38.25298 -34.82942 -33.08915 -32.86876 -32.58014 -30.57048 -29.74228 -26.59238 -24.65581 -23.56310 -23.22701 -21.87589 -21.28697 -19.25054 -18.78868 -17.31744 -17.02101 -17.00260 -16.82586 -16.51889 -15.73458 -15.47673 -14.73766 -14.64869 -14.46742 -14.29791 -14.28797 -13.67180 -13.38146 -13.28398 -12.86924 -12.84482 -12.56658 -12.50513 -12.16297 -11.97802 -11.81506 -11.67163 -11.56694 -11.42033 -11.28180 -10.76935 -10.28121 -9.75764 -9.13813 -8.36251 -6.48365 0.30923 0.49179 1.35033 1.38958 1.67034 2.22302 2.40937 2.72856 2.94926 3.51529 3.78172 3.87077 3.99137 4.08004 4.09046 4.14350 4.21288 4.31126 4.39581 4.41853 4.48297 4.55818 4.63230 4.76296 4.89491 4.96166 4.97540 5.00589 5.07691 5.20393 5.21895 5.33411 5.39636 5.50506 5.54512 5.71818 5.79909 6.20411 6.36319 6.48313 6.67460 7.27553 8.77977 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029935 B = 0.004763 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.123860 B = 5876.751951 C = 6137.284305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 O -0.331 6.331 4 C 0.121 3.879 5 C -0.207 4.207 6 C -0.083 4.083 7 C -0.152 4.152 8 C -0.045 4.045 9 C 0.093 3.907 10 H 0.077 0.923 11 C -0.129 4.129 12 C -0.131 4.131 13 C 0.164 3.836 14 H 0.031 0.969 15 C -0.526 4.526 16 H 0.043 0.957 17 C 0.028 3.972 18 N -0.939 5.939 19 Si 0.933 3.067 20 H -0.272 1.272 21 H -0.219 1.219 22 H -0.293 1.293 23 O -0.387 6.387 24 C -0.156 4.156 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.268 0.732 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.517 -10.608 -5.659 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.246 6.246 4 C 0.076 3.924 5 C -0.226 4.226 6 C -0.101 4.101 7 C -0.170 4.170 8 C -0.046 4.046 9 C 0.036 3.964 10 H 0.095 0.905 11 C -0.166 4.166 12 C -0.169 4.169 13 C 0.108 3.892 14 H 0.048 0.952 15 C -0.564 4.564 16 H 0.061 0.939 17 C -0.172 4.172 18 N -0.578 5.578 19 Si 0.757 3.243 20 H -0.197 1.197 21 H -0.141 1.141 22 H -0.220 1.220 23 O -0.308 6.308 24 C -0.174 4.174 25 H 0.119 0.881 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.172 0.828 31 H 0.163 0.837 32 H 0.126 0.874 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -21.494 -10.638 -5.390 24.581 hybrid contribution 0.581 0.109 0.674 0.896 sum -20.913 -10.529 -4.716 23.884 Atomic orbital electron populations 1.21804 0.91404 1.04194 1.03163 1.23091 0.96937 0.80754 1.02346 1.86046 1.18357 1.31426 1.88731 1.18923 0.82837 0.93909 0.96712 1.21465 0.93774 0.98865 1.08476 1.21192 0.95152 0.96914 0.96816 1.21032 1.00009 0.92882 1.03099 1.19564 0.92677 0.94654 0.97662 1.21907 0.88729 0.93095 0.92716 0.90542 1.22902 0.97572 1.00364 0.95802 1.22814 0.97085 1.00663 0.96361 1.20857 0.90839 0.85167 0.92291 0.95167 1.21256 0.90737 1.51475 0.92888 0.93913 1.25914 0.96793 0.92472 1.01994 1.70049 1.16113 1.50815 1.20854 0.85999 0.82287 0.78491 0.77540 1.19746 1.14136 1.21956 1.89464 1.30995 1.48014 1.62282 1.20240 0.93740 0.95999 1.07464 0.88069 0.92012 0.91780 0.90897 0.91256 0.82827 0.83696 0.87360 0.91172 0.88254 0.89835 0.92738 0.92345 0.84393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 71.98 0.74 -0.89 16 2 C 0.04 0.65 5.46 71.98 0.39 1.04 16 3 O -0.33 -7.78 10.14 -92.49 -0.94 -8.71 16 4 C 0.12 3.23 6.69 22.51 0.15 3.38 16 5 C -0.21 -4.97 9.04 22.37 0.20 -4.76 16 6 C -0.08 -2.26 10.04 22.25 0.22 -2.04 16 7 C -0.15 -5.23 9.37 22.28 0.21 -5.02 16 8 C -0.05 -1.54 4.93 -19.88 -0.10 -1.64 16 9 C 0.09 3.41 3.49 30.35 0.11 3.52 16 10 H 0.08 2.57 8.07 -2.39 -0.02 2.55 16 11 C -0.13 -4.17 6.63 31.67 0.21 -3.96 16 12 C -0.13 -5.12 6.63 31.67 0.21 -4.91 16 13 C 0.16 7.89 2.51 30.35 0.08 7.97 16 14 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 15 C -0.53 -31.01 9.36 25.60 0.24 -30.77 16 16 H 0.04 2.74 7.82 -2.91 -0.02 2.72 16 17 C 0.03 1.68 5.47 84.66 0.46 2.14 16 18 N -0.94 -59.96 13.96 21.45 0.30 -59.66 16 19 Si 0.93 46.72 27.06 68.60 1.86 48.58 16 20 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.22 -10.65 5.45 99.48 0.54 -10.11 16 22 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 23 O -0.39 -18.23 7.36 -148.98 -1.10 -19.33 16 24 C -0.16 -4.60 9.63 22.37 0.22 -4.38 16 25 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.92 7.66 -2.38 -0.02 0.90 16 29 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 30 H 0.15 2.62 6.30 -2.92 -0.02 2.60 16 31 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 32 H 0.11 4.27 7.62 -2.91 -0.02 4.25 16 33 H 0.07 2.24 7.86 -2.39 -0.02 2.22 16 34 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 35 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.05 2.28 7.71 -2.39 -0.02 2.26 16 37 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 38 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -70.84 311.12 4.33 -66.52 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.87 Total: 12.93 kcal Atomic # 6 Polarization: -43.66 SS G_CDS: 3.34 Total: -40.32 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.30 Total: -59.66 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -2.03 Total: -28.04 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.86 Total: 48.58 kcal Total: -70.84 4.33 -66.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310174063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.153 kcal (2) G-P(sol) polarization free energy of solvation -70.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds