Wall clock time and date at job start Mon Mar 30 2020 06:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46698 * 2 1 4 4 N 1.46496 * 109.47373 * 179.97438 * 3 2 1 5 5 C 1.36785 * 120.00302 * 264.45709 * 4 3 2 6 6 H 1.07994 * 120.00070 * 132.10959 * 5 4 3 7 7 C 1.39104 * 119.99639 * 312.10508 * 5 4 3 8 8 N 1.31324 * 120.00431 * 3.21082 * 7 5 4 9 9 Si 1.86803 * 119.99800 * 183.20453 * 7 5 4 10 10 H 1.48496 * 109.47013 * 60.00728 * 9 7 5 11 11 H 1.48499 * 109.46928 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47441 * 300.00301 * 9 7 5 13 13 C 1.34777 * 119.99866 * 84.45064 * 4 3 2 14 14 O 1.21568 * 120.00174 * 4.85356 * 13 4 3 15 15 C 1.48002 * 120.00135 * 184.85298 * 13 4 3 16 16 C 1.39409 * 119.73539 * 174.21418 * 15 13 4 17 17 C 1.38542 * 119.05705 * 179.97438 * 16 15 13 18 18 C 1.50704 * 120.74926 * 179.97438 * 17 16 15 19 19 C 1.38659 * 118.49724 * 0.02562 * 17 16 15 20 20 C 1.38556 * 119.37237 * 359.97438 * 19 17 16 21 21 C 1.50696 * 119.54559 * 180.02562 * 20 19 17 22 22 N 1.31531 * 120.90688 * 359.73913 * 20 19 17 23 23 H 1.09009 * 109.46791 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47210 * 299.99687 * 1 2 3 25 25 H 1.08993 * 109.47666 * 59.99841 * 1 2 3 26 26 H 1.08992 * 109.46823 * 240.00170 * 2 1 3 27 27 H 1.08996 * 109.47012 * 119.99812 * 2 1 3 28 28 H 1.09005 * 109.47460 * 59.99891 * 3 2 1 29 29 H 1.09001 * 109.47501 * 300.00549 * 3 2 1 30 30 H 0.97001 * 120.00380 * 179.97438 * 8 7 5 31 31 H 1.08003 * 120.46993 * 0.02562 * 16 15 13 32 32 H 1.08994 * 109.47196 * 90.00182 * 18 17 16 33 33 H 1.09004 * 109.46713 * 209.99692 * 18 17 16 34 34 H 1.08990 * 109.47265 * 330.00109 * 18 17 16 35 35 H 1.08001 * 120.31741 * 179.97438 * 19 17 16 36 36 H 1.08998 * 109.47056 * 89.99943 * 21 20 19 37 37 H 1.08998 * 109.46744 * 209.99658 * 21 20 19 38 38 H 1.08995 * 109.47360 * 329.99514 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1883 1.5574 1.1799 6 1 5.0014 0.8818 1.4007 7 6 3.8361 2.5443 2.0947 8 7 2.8077 3.3251 1.8550 9 14 4.8257 2.7588 3.6645 10 1 6.2356 3.0745 3.3215 11 1 4.2500 3.8694 4.4647 12 1 4.7780 1.5029 4.4554 13 6 4.1792 1.3297 -1.1608 14 8 3.5751 1.3165 -2.2157 15 6 5.6553 1.2218 -1.1521 16 6 6.3383 0.9840 -2.3439 17 6 7.7200 0.8860 -2.3196 18 6 8.4966 0.6290 -3.5853 19 6 8.3721 1.0285 -1.1042 20 6 7.6297 1.2635 0.0419 21 6 8.3343 1.4197 1.3647 22 7 6.3188 1.3577 -0.0098 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6765 1.9564 0.8900 29 1 1.6765 1.9564 -0.8899 30 1 2.5619 4.0130 2.4931 31 1 5.7980 0.8785 -3.2731 32 1 8.7585 1.5795 -4.0501 33 1 9.4066 0.0779 -3.3476 34 1 7.8867 0.0439 -4.2734 35 1 9.4484 0.9571 -1.0513 36 1 8.5789 2.4698 1.5244 37 1 7.6828 1.0724 2.1666 38 1 9.2509 0.8298 1.3600 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310265259.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:32 Heat of formation + Delta-G solvation = -0.833597 kcal Electronic energy + Delta-G solvation = -20135.209295 eV Core-core repulsion = 17170.811087 eV Total energy + Delta-G solvation = -2964.398208 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.93441 -38.06536 -35.09321 -33.75461 -32.81091 -32.01189 -30.98946 -27.53543 -27.15122 -25.93890 -24.81541 -22.86595 -20.69069 -20.61407 -19.15259 -17.44918 -16.28746 -15.50132 -15.25931 -14.55145 -14.42833 -14.26715 -13.92593 -13.51103 -13.43987 -13.09504 -12.82940 -12.50690 -12.38175 -12.26219 -11.86933 -11.59602 -11.39451 -11.27061 -11.23116 -11.13703 -10.89700 -10.65109 -10.31826 -10.21450 -9.66911 -9.05417 -8.97765 -8.87750 -8.35541 -8.18470 -7.24898 -6.19369 -3.94176 1.39558 1.79419 3.22973 3.27729 3.29981 3.75927 4.19718 4.57287 4.71611 4.87361 4.95462 5.16272 5.35283 5.43182 5.61153 5.64756 5.69965 5.84024 5.87636 5.93855 5.96209 5.99327 6.11249 6.15619 6.25677 6.44218 6.53653 6.57901 6.63463 6.72548 6.78743 6.87863 7.15701 7.26521 7.51320 7.77604 8.10824 8.57171 8.70940 9.20370 9.52878 9.96901 10.80265 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.008980 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.302914 B = 3117.133502 C = 4592.046055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.107 3.893 4 N -0.410 5.410 5 C -0.293 4.293 6 H 0.112 0.888 7 C 0.038 3.962 8 N -0.878 5.878 9 Si 0.920 3.080 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.506 3.494 14 O -0.604 6.604 15 C 0.123 3.877 16 C -0.140 4.140 17 C -0.061 4.061 18 C -0.109 4.109 19 C -0.177 4.177 20 C 0.110 3.890 21 C -0.099 4.099 22 N -0.412 5.412 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.268 0.732 31 H 0.137 0.863 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.261 -4.419 -2.160 9.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C -0.016 4.016 4 N -0.124 5.124 5 C -0.423 4.423 6 H 0.129 0.871 7 C -0.165 4.165 8 N -0.517 5.517 9 Si 0.747 3.253 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.200 1.200 13 C 0.294 3.706 14 O -0.490 6.490 15 C -0.016 4.016 16 C -0.161 4.161 17 C -0.068 4.068 18 C -0.165 4.165 19 C -0.198 4.198 20 C -0.029 4.029 21 C -0.157 4.157 22 N -0.124 5.124 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.136 0.864 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.155 0.845 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.142 0.858 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.325 -4.092 -1.781 8.577 hybrid contribution 0.987 0.150 0.062 1.000 sum 8.312 -3.943 -1.719 9.359 Atomic orbital electron populations 1.21640 0.96460 1.00347 1.01475 1.21845 0.94870 0.99457 1.01118 1.21705 0.81223 0.94380 1.04246 1.43431 1.04975 1.58900 1.05143 1.19953 1.14411 1.14453 0.93439 0.87062 1.25564 0.96144 0.94946 0.99867 1.69672 1.25425 1.19805 1.36792 0.86118 0.80510 0.77752 0.80933 1.19292 1.21404 1.19998 1.18144 0.85095 0.82873 0.84471 1.90608 1.68759 1.58369 1.31289 1.21462 0.95524 0.96006 0.88568 1.21940 0.93552 1.00906 0.99701 1.20141 0.93686 0.97550 0.95460 1.20735 0.99408 1.02002 0.94404 1.21853 1.00316 1.04681 0.92935 1.21586 0.90735 0.95344 0.95249 1.20661 0.99083 1.02340 0.93598 1.68708 1.06915 1.09606 1.27177 0.93717 0.92854 0.93155 0.93183 0.92366 0.86379 0.93025 0.92180 0.84526 0.91029 0.91534 0.91284 0.85774 0.90865 0.90440 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 37.16 0.37 -2.08 16 2 C -0.13 -2.84 6.22 -26.73 -0.17 -3.01 16 3 C 0.11 2.66 4.88 -4.04 -0.02 2.64 16 4 N -0.41 -10.85 2.51 -115.84 -0.29 -11.14 16 5 C -0.29 -7.70 7.47 -15.02 -0.11 -7.81 16 6 H 0.11 2.89 5.97 -52.49 -0.31 2.58 16 7 C 0.04 1.00 5.35 -17.45 -0.09 0.91 16 8 N -0.88 -23.84 10.98 55.50 0.61 -23.23 16 9 Si 0.92 20.27 29.56 -169.99 -5.02 15.25 16 10 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 C 0.51 13.31 7.57 -12.26 -0.09 13.21 16 14 O -0.60 -16.66 15.98 5.31 0.08 -16.58 16 15 C 0.12 2.86 6.66 -83.01 -0.55 2.31 16 16 C -0.14 -2.74 9.34 -39.03 -0.36 -3.10 16 17 C -0.06 -0.97 5.91 -104.35 -0.62 -1.59 16 18 C -0.11 -1.25 10.06 36.01 0.36 -0.89 16 19 C -0.18 -2.76 9.45 -39.31 -0.37 -3.13 16 20 C 0.11 2.01 6.78 -82.61 -0.56 1.45 16 21 C -0.10 -1.48 10.17 36.00 0.37 -1.11 16 22 N -0.41 -9.20 6.28 -6.07 -0.04 -9.24 16 23 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.12 3.08 5.51 -51.93 -0.29 2.80 16 29 H 0.05 1.33 7.53 -51.93 -0.39 0.94 16 30 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 31 H 0.14 2.61 7.65 -52.48 -0.40 2.21 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 34 H 0.07 0.75 8.10 -51.93 -0.42 0.32 16 35 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 LS Contribution 318.83 15.07 4.80 4.80 Total: -1.00 -30.41 318.83 -7.30 -37.71 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.59 Total: 4.63 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -1.85 Total: -2.20 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.28 Total: -43.61 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.08 Total: -16.58 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.41 -7.30 -37.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310265259.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.874 kcal (2) G-P(sol) polarization free energy of solvation -30.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds