Wall clock time and date at job start Mon Mar 30 2020 06:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46698 * 2 1 4 4 N 1.46496 * 109.47373 * 179.97438 * 3 2 1 5 5 C 1.36785 * 120.00302 * 264.45709 * 4 3 2 6 6 H 1.07994 * 120.00070 * 132.10959 * 5 4 3 7 7 C 1.39104 * 119.99639 * 312.10508 * 5 4 3 8 8 N 1.31324 * 120.00431 * 3.21082 * 7 5 4 9 9 Si 1.86803 * 119.99800 * 183.20453 * 7 5 4 10 10 H 1.48496 * 109.47013 * 60.00728 * 9 7 5 11 11 H 1.48499 * 109.46928 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47441 * 300.00301 * 9 7 5 13 13 C 1.34777 * 119.99866 * 84.45064 * 4 3 2 14 14 O 1.21568 * 120.00174 * 4.85356 * 13 4 3 15 15 C 1.48002 * 120.00135 * 184.85298 * 13 4 3 16 16 C 1.39409 * 119.73539 * 174.21418 * 15 13 4 17 17 C 1.38542 * 119.05705 * 179.97438 * 16 15 13 18 18 C 1.50704 * 120.74926 * 179.97438 * 17 16 15 19 19 C 1.38659 * 118.49724 * 0.02562 * 17 16 15 20 20 C 1.38556 * 119.37237 * 359.97438 * 19 17 16 21 21 C 1.50696 * 119.54559 * 180.02562 * 20 19 17 22 22 N 1.31531 * 120.90688 * 359.73913 * 20 19 17 23 23 H 1.09009 * 109.46791 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47210 * 299.99687 * 1 2 3 25 25 H 1.08993 * 109.47666 * 59.99841 * 1 2 3 26 26 H 1.08992 * 109.46823 * 240.00170 * 2 1 3 27 27 H 1.08996 * 109.47012 * 119.99812 * 2 1 3 28 28 H 1.09005 * 109.47460 * 59.99891 * 3 2 1 29 29 H 1.09001 * 109.47501 * 300.00549 * 3 2 1 30 30 H 0.97001 * 120.00380 * 179.97438 * 8 7 5 31 31 H 1.08003 * 120.46993 * 0.02562 * 16 15 13 32 32 H 1.08994 * 109.47196 * 90.00182 * 18 17 16 33 33 H 1.09004 * 109.46713 * 209.99692 * 18 17 16 34 34 H 1.08990 * 109.47265 * 330.00109 * 18 17 16 35 35 H 1.08001 * 120.31741 * 179.97438 * 19 17 16 36 36 H 1.08998 * 109.47056 * 89.99943 * 21 20 19 37 37 H 1.08998 * 109.46744 * 209.99658 * 21 20 19 38 38 H 1.08995 * 109.47360 * 329.99514 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1883 1.5574 1.1799 6 1 5.0014 0.8818 1.4007 7 6 3.8361 2.5443 2.0947 8 7 2.8077 3.3251 1.8550 9 14 4.8257 2.7588 3.6645 10 1 6.2356 3.0745 3.3215 11 1 4.2500 3.8694 4.4647 12 1 4.7780 1.5029 4.4554 13 6 4.1792 1.3297 -1.1608 14 8 3.5751 1.3165 -2.2157 15 6 5.6553 1.2218 -1.1521 16 6 6.3383 0.9840 -2.3439 17 6 7.7200 0.8860 -2.3196 18 6 8.4966 0.6290 -3.5853 19 6 8.3721 1.0285 -1.1042 20 6 7.6297 1.2635 0.0419 21 6 8.3343 1.4197 1.3647 22 7 6.3188 1.3577 -0.0098 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6765 1.9564 0.8900 29 1 1.6765 1.9564 -0.8899 30 1 2.5619 4.0130 2.4931 31 1 5.7980 0.8785 -3.2731 32 1 8.7585 1.5795 -4.0501 33 1 9.4066 0.0779 -3.3476 34 1 7.8867 0.0439 -4.2734 35 1 9.4484 0.9571 -1.0513 36 1 8.5789 2.4698 1.5244 37 1 7.6828 1.0724 2.1666 38 1 9.2509 0.8298 1.3600 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310265259.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:31 Heat of formation + Delta-G solvation = -18.180106 kcal Electronic energy + Delta-G solvation = -20135.961496 eV Core-core repulsion = 17170.811087 eV Total energy + Delta-G solvation = -2965.150409 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.50744 -39.90404 -37.06930 -35.08332 -34.53526 -33.60072 -32.81070 -28.82571 -28.36264 -27.66019 -26.73012 -24.48803 -22.36751 -22.00893 -21.06859 -19.25633 -17.97724 -17.06556 -16.84032 -16.34043 -16.28212 -15.93416 -15.57549 -15.09709 -15.02404 -14.40897 -14.09758 -14.06770 -13.70875 -13.36578 -13.31170 -13.11262 -12.98403 -12.88440 -12.83663 -12.66029 -12.46603 -12.38337 -12.04049 -11.96849 -11.52118 -10.94165 -10.82707 -10.31431 -9.94611 -9.81556 -9.21218 -8.16232 -5.98478 -0.11623 0.42189 1.45985 1.49434 1.57298 2.02395 2.36601 2.82814 3.02836 3.17300 3.52472 3.80061 3.98509 4.16841 4.18288 4.24488 4.30950 4.50431 4.60613 4.64299 4.74454 4.80600 4.82408 4.84166 4.88241 4.95720 5.06609 5.07661 5.23059 5.25871 5.31261 5.35088 5.42773 5.53667 5.72422 5.91072 6.12371 6.60671 7.08123 7.27014 7.55546 7.97535 8.83844 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.008980 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.302914 B = 3117.133502 C = 4592.046055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.109 3.891 4 N -0.426 5.426 5 C -0.300 4.300 6 H 0.112 0.888 7 C -0.008 4.008 8 N -0.913 5.913 9 Si 0.982 3.018 10 H -0.257 1.257 11 H -0.289 1.289 12 H -0.263 1.263 13 C 0.491 3.509 14 O -0.633 6.633 15 C 0.083 3.917 16 C -0.150 4.150 17 C -0.052 4.052 18 C -0.106 4.106 19 C -0.154 4.154 20 C 0.093 3.907 21 C -0.098 4.098 22 N -0.448 5.448 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.036 0.964 27 H 0.054 0.946 28 H 0.105 0.895 29 H 0.028 0.972 30 H 0.267 0.733 31 H 0.130 0.870 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.176 0.824 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.584 -5.333 -1.845 12.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.162 4.162 3 C -0.014 4.014 4 N -0.140 5.140 5 C -0.429 4.429 6 H 0.129 0.871 7 C -0.207 4.207 8 N -0.553 5.553 9 Si 0.805 3.195 10 H -0.181 1.181 11 H -0.215 1.215 12 H -0.188 1.188 13 C 0.280 3.720 14 O -0.522 6.522 15 C -0.054 4.054 16 C -0.171 4.171 17 C -0.060 4.060 18 C -0.162 4.162 19 C -0.174 4.174 20 C -0.047 4.047 21 C -0.155 4.155 22 N -0.161 5.161 23 H 0.093 0.907 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.122 0.878 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.148 0.852 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.193 0.807 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.649 -5.021 -1.465 11.864 hybrid contribution 0.094 0.409 -0.146 0.445 sum 10.743 -4.612 -1.611 11.802 Atomic orbital electron populations 1.21590 0.93213 1.02415 1.01853 1.21730 0.97648 0.96641 1.00188 1.21663 0.81203 0.96348 1.02218 1.43688 1.05499 1.59281 1.05572 1.20099 1.14479 1.14925 0.93422 0.87063 1.26393 0.96949 0.94440 1.02964 1.69814 1.26914 1.20575 1.38011 0.85173 0.79358 0.77904 0.77069 1.18144 1.21500 1.18800 1.18821 0.87088 0.82058 0.83990 1.90542 1.70052 1.59577 1.32070 1.21108 0.93916 0.99881 0.90529 1.22022 0.95543 1.01393 0.98157 1.20668 0.92170 0.95238 0.97894 1.20851 0.99928 1.03367 0.92058 1.22374 1.02589 1.01017 0.91407 1.22249 0.89622 0.94923 0.97880 1.20783 1.00075 1.03503 0.91145 1.68456 1.09403 1.10970 1.27247 0.90745 0.92349 0.92926 0.94498 0.92681 0.87759 0.95353 0.92296 0.85184 0.89421 0.88401 0.90882 0.80692 0.90227 0.92084 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 9.91 71.98 0.71 -3.89 16 2 C -0.12 -5.43 6.22 30.59 0.19 -5.24 16 3 C 0.11 5.71 4.88 86.38 0.42 6.13 16 4 N -0.43 -23.81 2.51 -638.67 -1.60 -25.41 16 5 C -0.30 -16.37 7.47 84.13 0.63 -15.74 16 6 H 0.11 5.96 5.97 -2.91 -0.02 5.95 16 7 C -0.01 -0.42 5.35 84.98 0.45 0.04 16 8 N -0.91 -51.50 10.98 21.69 0.24 -51.26 16 9 Si 0.98 41.88 29.56 68.60 2.03 43.90 16 10 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 11 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 13 C 0.49 27.32 7.57 86.83 0.66 27.98 16 14 O -0.63 -37.19 15.98 -3.93 -0.06 -37.26 16 15 C 0.08 3.97 6.66 41.87 0.28 4.25 16 16 C -0.15 -5.88 9.34 22.62 0.21 -5.67 16 17 C -0.05 -1.50 5.91 -19.69 -0.12 -1.62 16 18 C -0.11 -1.95 10.06 71.24 0.72 -1.23 16 19 C -0.15 -4.13 9.45 22.45 0.21 -3.91 16 20 C 0.09 3.18 6.78 42.68 0.29 3.47 16 21 C -0.10 -2.58 10.17 71.23 0.72 -1.86 16 22 N -0.45 -20.12 6.28 -173.12 -1.09 -21.21 16 23 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 24 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.10 5.77 5.51 -2.38 -0.01 5.76 16 29 H 0.03 1.56 7.53 -2.39 -0.02 1.55 16 30 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 31 H 0.13 5.13 7.65 -2.91 -0.02 5.10 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.10 1.26 8.10 -2.38 -0.02 1.24 16 34 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 35 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 38 H 0.11 1.92 8.08 -2.39 -0.02 1.90 16 Total: -1.00 -71.38 318.83 5.94 -65.44 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 1.04 Total: 23.09 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 5.38 Total: 2.71 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -2.45 Total: -97.88 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -0.06 Total: -37.26 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -71.38 5.94 -65.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310265259.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.261 kcal (2) G-P(sol) polarization free energy of solvation -71.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds