Wall clock time and date at job start Mon Mar 30 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35899 * 116.99949 * 2 1 4 4 C 1.38756 * 120.05401 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94201 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.05700 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.11005 * 0.04182 * 6 5 4 8 8 C 1.50706 * 119.97022 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.48910 * 205.02551 * 8 7 6 10 10 C 1.53096 * 109.47777 * 85.00128 * 8 7 6 11 11 C 1.53181 * 109.16280 * 182.40604 * 10 8 7 12 12 C 1.53178 * 109.03300 * 56.98248 * 11 10 8 13 13 C 1.53100 * 109.16395 * 303.01709 * 12 11 10 14 14 H 1.08991 * 109.48893 * 297.62433 * 13 12 11 15 15 C 1.50700 * 109.47916 * 177.59172 * 13 12 11 16 16 H 1.07994 * 120.00087 * 0.06124 * 15 13 12 17 17 C 1.37875 * 119.99923 * 180.02562 * 15 13 12 18 18 N 1.31521 * 119.99920 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00156 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47155 * 60.00272 * 19 17 15 21 21 H 1.48499 * 109.46981 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46949 * 299.99911 * 19 17 15 23 23 O 1.42894 * 109.48071 * 325.06022 * 8 7 6 24 24 C 1.38161 * 120.05662 * 0.23449 * 7 6 5 25 25 H 1.08994 * 109.47184 * 59.99833 * 1 2 3 26 26 H 1.09005 * 109.46697 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46800 * 299.99255 * 1 2 3 28 28 H 1.08003 * 120.03096 * 0.04468 * 4 3 2 29 29 H 1.08003 * 119.97138 * 180.02562 * 5 4 3 30 30 H 1.08000 * 119.94201 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.52300 * 302.31556 * 10 8 7 32 32 H 1.09004 * 109.51858 * 62.50283 * 10 8 7 33 33 H 1.09000 * 109.54215 * 176.84680 * 11 10 8 34 34 H 1.09003 * 109.54032 * 297.11816 * 11 10 8 35 35 H 1.08997 * 109.52451 * 183.11671 * 12 11 10 36 36 H 1.08997 * 109.57512 * 62.95642 * 12 11 10 37 37 H 0.96996 * 119.99629 * 180.02562 * 18 17 15 38 38 H 1.08011 * 120.02634 * 179.74414 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6047 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 4.0559 2.5171 -0.0014 8 6 5.5608 2.5983 -0.0026 9 1 5.9737 1.6882 -0.4378 10 6 6.0649 2.7510 1.4349 11 6 7.5900 2.8931 1.4205 12 6 7.9721 4.0872 0.5405 13 6 7.3943 3.8829 -0.8625 14 1 7.8312 2.9898 -1.3091 15 6 7.7158 5.0813 -1.7178 16 1 8.2767 5.9058 -1.3032 17 6 7.2943 5.1249 -3.0298 18 7 6.6113 4.1207 -3.5347 19 14 7.6933 6.6100 -4.0902 20 1 9.1666 6.7718 -4.1813 21 1 7.1316 6.4122 -5.4506 22 1 7.0982 7.8269 -3.4817 23 8 5.9766 3.7268 -0.7742 24 6 3.4311 1.2849 -0.0066 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 0.2128 2.3203 0.0017 29 1 1.3339 4.5114 0.0008 30 1 3.7921 4.6381 -0.0005 31 1 5.6205 3.6390 1.8844 32 1 5.7865 1.8704 2.0140 33 1 7.9504 3.0583 2.4358 34 1 8.0370 1.9846 1.0166 35 1 9.0578 4.1623 0.4798 36 1 7.5672 5.0028 0.9714 37 1 6.3151 4.1512 -4.4579 38 1 4.0207 0.3799 -0.0115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310433602.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:39 Heat of formation + Delta-G solvation = -69.824158 kcal Electronic energy + Delta-G solvation = -19829.776780 eV Core-core repulsion = 16830.094165 eV Total energy + Delta-G solvation = -2999.682614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.91854 -38.39902 -36.78993 -33.01900 -32.43967 -31.49568 -30.19317 -28.67952 -27.20665 -25.57793 -23.63471 -22.31318 -21.79963 -20.49188 -19.20023 -17.58443 -16.53237 -16.01015 -15.62607 -15.59107 -14.77102 -14.57925 -14.29606 -14.06742 -13.70622 -13.18701 -13.11477 -12.76922 -12.45942 -12.21548 -11.97157 -11.74471 -11.10083 -10.96812 -10.93213 -10.85540 -10.66482 -10.60157 -10.35465 -10.23850 -9.84519 -9.61291 -8.87703 -8.58617 -8.40424 -7.90740 -7.76481 -5.98924 -4.11788 1.67096 1.84704 3.33384 3.38462 3.39329 3.40585 4.13271 4.43383 4.88753 4.99507 5.11907 5.16093 5.22522 5.38454 5.42396 5.53133 5.58411 5.71371 5.74656 5.82281 5.86222 6.11914 6.15356 6.19462 6.31663 6.37432 6.54929 6.58093 6.69438 6.80043 6.87105 6.90254 6.94134 7.10829 7.19084 7.53709 7.63904 7.91487 8.29870 8.79092 9.13593 9.58581 11.08348 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021538 B = 0.005685 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.728377 B = 4924.371468 C = 5718.187825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.116 3.884 4 C -0.217 4.217 5 C -0.089 4.089 6 C -0.119 4.119 7 C -0.019 4.019 8 C 0.121 3.879 9 H 0.052 0.948 10 C -0.138 4.138 11 C -0.120 4.120 12 C -0.144 4.144 13 C 0.219 3.781 14 H 0.014 0.986 15 C -0.528 4.528 16 H 0.063 0.937 17 C 0.079 3.921 18 N -0.858 5.858 19 Si 0.891 3.109 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 O -0.347 6.347 24 C -0.146 4.146 25 H 0.053 0.947 26 H 0.095 0.905 27 H 0.052 0.948 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.133 0.867 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.261 0.739 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.305 -5.525 8.405 13.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.071 3.929 4 C -0.235 4.235 5 C -0.107 4.107 6 C -0.138 4.138 7 C -0.020 4.020 8 C 0.062 3.938 9 H 0.069 0.931 10 C -0.176 4.176 11 C -0.158 4.158 12 C -0.182 4.182 13 C 0.164 3.836 14 H 0.032 0.968 15 C -0.565 4.565 16 H 0.082 0.918 17 C -0.127 4.127 18 N -0.493 5.493 19 Si 0.718 3.282 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 O -0.266 6.266 24 C -0.165 4.165 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.151 0.849 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.439 -5.667 8.150 13.698 hybrid contribution -0.023 0.716 -0.540 0.897 sum -9.462 -4.951 7.609 13.113 Atomic orbital electron populations 1.22969 0.79048 1.03355 1.01143 1.86038 1.20851 1.27377 1.89294 1.18851 0.92111 0.83823 0.98093 1.21092 0.99334 0.92573 1.10538 1.20921 0.94778 0.96624 0.98358 1.21034 0.92921 0.99319 1.00492 1.19642 0.95407 0.91983 0.94940 1.20620 0.88855 0.93085 0.91253 0.93067 1.22142 0.96507 1.01468 0.97505 1.21623 0.95222 0.99554 0.99374 1.22263 1.00388 0.96736 0.98815 1.19715 0.77957 0.96759 0.89156 0.96826 1.20951 1.35931 1.04728 0.94912 0.91848 1.25068 0.93961 0.95825 0.97877 1.70033 1.34702 1.30235 1.14358 0.86698 0.78644 0.83380 0.79468 1.20118 1.21217 1.20074 1.88378 1.25890 1.42923 1.69439 1.20166 0.91115 0.98101 1.07137 0.92869 0.88689 0.92974 0.86181 0.86187 0.84945 0.91650 0.92469 0.93010 0.92599 0.92456 0.92476 0.92902 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.68 10.50 -19.42 -0.20 -4.88 16 3 C 0.12 1.87 6.69 -39.22 -0.26 1.61 16 4 C -0.22 -3.22 9.04 -39.43 -0.36 -3.58 16 5 C -0.09 -1.40 10.04 -39.61 -0.40 -1.80 16 6 C -0.12 -2.24 9.35 -39.56 -0.37 -2.61 16 7 C -0.02 -0.38 5.00 -104.65 -0.52 -0.90 16 8 C 0.12 2.53 2.86 -27.83 -0.08 2.45 16 9 H 0.05 1.10 8.05 -51.93 -0.42 0.68 16 10 C -0.14 -2.46 5.40 -26.59 -0.14 -2.60 16 11 C -0.12 -2.13 6.03 -26.55 -0.16 -2.29 16 12 C -0.14 -3.03 5.36 -26.59 -0.14 -3.18 16 13 C 0.22 5.64 2.50 -27.83 -0.07 5.57 16 14 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 15 C -0.53 -14.79 8.79 -34.44 -0.30 -15.09 16 16 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 17 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 18 N -0.86 -25.45 12.84 55.43 0.71 -24.74 16 19 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 O -0.35 -8.86 8.58 -35.23 -0.30 -9.17 16 24 C -0.15 -2.59 9.62 -39.44 -0.38 -2.97 16 25 H 0.05 0.48 7.66 -51.93 -0.40 0.09 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 28 H 0.12 1.42 6.30 -52.48 -0.33 1.09 16 29 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 30 H 0.13 2.63 7.62 -52.49 -0.40 2.23 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.13 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 313.26 15.07 4.72 4.72 Total: -1.00 -31.03 313.26 -8.10 -39.13 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.71 Total: 0.54 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -2.29 Total: -21.96 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.71 Total: -24.74 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.51 Total: -14.04 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.03 -8.10 -39.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310433602.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.691 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds