Wall clock time and date at job start Mon Mar 30 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35899 * 116.99949 * 2 1 4 4 C 1.38756 * 120.05401 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94201 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.05700 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.11005 * 0.04182 * 6 5 4 8 8 C 1.50706 * 119.97022 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.48910 * 205.02551 * 8 7 6 10 10 C 1.53096 * 109.47777 * 85.00128 * 8 7 6 11 11 C 1.53181 * 109.16280 * 182.40604 * 10 8 7 12 12 C 1.53178 * 109.03300 * 56.98248 * 11 10 8 13 13 C 1.53100 * 109.16395 * 303.01709 * 12 11 10 14 14 H 1.08991 * 109.48893 * 297.62433 * 13 12 11 15 15 C 1.50700 * 109.47916 * 177.59172 * 13 12 11 16 16 H 1.07994 * 120.00087 * 0.06124 * 15 13 12 17 17 C 1.37875 * 119.99923 * 180.02562 * 15 13 12 18 18 N 1.31521 * 119.99920 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00156 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47155 * 60.00272 * 19 17 15 21 21 H 1.48499 * 109.46981 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46949 * 299.99911 * 19 17 15 23 23 O 1.42894 * 109.48071 * 325.06022 * 8 7 6 24 24 C 1.38161 * 120.05662 * 0.23449 * 7 6 5 25 25 H 1.08994 * 109.47184 * 59.99833 * 1 2 3 26 26 H 1.09005 * 109.46697 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46800 * 299.99255 * 1 2 3 28 28 H 1.08003 * 120.03096 * 0.04468 * 4 3 2 29 29 H 1.08003 * 119.97138 * 180.02562 * 5 4 3 30 30 H 1.08000 * 119.94201 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.52300 * 302.31556 * 10 8 7 32 32 H 1.09004 * 109.51858 * 62.50283 * 10 8 7 33 33 H 1.09000 * 109.54215 * 176.84680 * 11 10 8 34 34 H 1.09003 * 109.54032 * 297.11816 * 11 10 8 35 35 H 1.08997 * 109.52451 * 183.11671 * 12 11 10 36 36 H 1.08997 * 109.57512 * 62.95642 * 12 11 10 37 37 H 0.96996 * 119.99629 * 180.02562 * 18 17 15 38 38 H 1.08011 * 120.02634 * 179.74414 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6047 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 4.0559 2.5171 -0.0014 8 6 5.5608 2.5983 -0.0026 9 1 5.9737 1.6882 -0.4378 10 6 6.0649 2.7510 1.4349 11 6 7.5900 2.8931 1.4205 12 6 7.9721 4.0872 0.5405 13 6 7.3943 3.8829 -0.8625 14 1 7.8312 2.9898 -1.3091 15 6 7.7158 5.0813 -1.7178 16 1 8.2767 5.9058 -1.3032 17 6 7.2943 5.1249 -3.0298 18 7 6.6113 4.1207 -3.5347 19 14 7.6933 6.6100 -4.0902 20 1 9.1666 6.7718 -4.1813 21 1 7.1316 6.4122 -5.4506 22 1 7.0982 7.8269 -3.4817 23 8 5.9766 3.7268 -0.7742 24 6 3.4311 1.2849 -0.0066 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 0.2128 2.3203 0.0017 29 1 1.3339 4.5114 0.0008 30 1 3.7921 4.6381 -0.0005 31 1 5.6205 3.6390 1.8844 32 1 5.7865 1.8704 2.0140 33 1 7.9504 3.0583 2.4358 34 1 8.0370 1.9846 1.0166 35 1 9.0578 4.1623 0.4798 36 1 7.5672 5.0028 0.9714 37 1 6.3151 4.1512 -4.4579 38 1 4.0207 0.3799 -0.0115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310433602.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:39 Heat of formation + Delta-G solvation = -87.950436 kcal Electronic energy + Delta-G solvation = -19830.562794 eV Core-core repulsion = 16830.094165 eV Total energy + Delta-G solvation = -3000.468629 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17495 -39.95763 -38.13589 -34.96945 -34.12767 -33.14924 -31.50670 -30.24721 -28.17078 -27.42474 -25.22269 -23.85049 -23.32990 -21.90284 -20.83548 -18.93494 -18.49506 -17.28042 -16.93971 -16.69450 -16.60503 -16.20416 -15.96730 -15.53412 -15.24963 -14.62449 -14.44103 -14.36104 -14.05931 -13.58646 -13.28554 -13.00591 -12.82303 -12.67734 -12.53659 -12.42075 -12.14979 -11.99468 -11.90034 -11.79793 -11.67823 -11.26021 -10.86093 -10.56309 -9.97049 -9.56813 -9.10906 -8.13530 -6.34586 0.35777 0.52752 1.41120 1.44235 1.51733 2.34444 2.41532 2.79679 3.05655 3.56902 3.88185 3.94240 4.09587 4.14116 4.15124 4.29049 4.36339 4.43283 4.45678 4.48189 4.53377 4.61461 4.75008 4.77701 4.86215 4.98586 5.06243 5.09571 5.18392 5.22595 5.28731 5.32282 5.52518 5.56522 5.76861 5.79426 5.83564 6.22092 6.49092 6.68063 7.20283 7.41943 8.93914 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021538 B = 0.005685 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.728377 B = 4924.371468 C = 5718.187825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.119 3.881 4 C -0.208 4.208 5 C -0.083 4.083 6 C -0.146 4.146 7 C -0.040 4.040 8 C 0.115 3.885 9 H 0.034 0.966 10 C -0.129 4.129 11 C -0.115 4.115 12 C -0.136 4.136 13 C 0.215 3.785 14 H -0.022 1.022 15 C -0.552 4.552 16 H 0.066 0.934 17 C 0.026 3.974 18 N -0.897 5.897 19 Si 0.961 3.039 20 H -0.263 1.263 21 H -0.284 1.284 22 H -0.269 1.269 23 O -0.375 6.375 24 C -0.163 4.163 25 H 0.062 0.938 26 H 0.120 0.880 27 H 0.068 0.932 28 H 0.158 0.842 29 H 0.149 0.851 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.260 0.740 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.951 -5.428 9.491 15.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.073 3.927 4 C -0.226 4.226 5 C -0.100 4.100 6 C -0.164 4.164 7 C -0.040 4.040 8 C 0.056 3.944 9 H 0.052 0.948 10 C -0.167 4.167 11 C -0.152 4.152 12 C -0.174 4.174 13 C 0.159 3.841 14 H -0.005 1.005 15 C -0.589 4.589 16 H 0.084 0.916 17 C -0.177 4.177 18 N -0.534 5.534 19 Si 0.785 3.215 20 H -0.188 1.188 21 H -0.209 1.209 22 H -0.194 1.194 23 O -0.295 6.295 24 C -0.182 4.182 25 H 0.080 0.920 26 H 0.138 0.862 27 H 0.087 0.913 28 H 0.176 0.824 29 H 0.167 0.833 30 H 0.128 0.872 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.084 -5.576 9.254 15.478 hybrid contribution 0.368 0.571 -0.858 1.094 sum -10.715 -5.005 8.396 14.504 Atomic orbital electron populations 1.23364 0.76320 1.05609 1.02348 1.86031 1.23632 1.26489 1.88863 1.18931 0.91729 0.85086 0.96905 1.21468 1.01161 0.91412 1.08560 1.21216 0.93585 0.98445 0.96800 1.20979 0.94523 0.98095 1.02807 1.19568 0.94444 0.93099 0.96919 1.20792 0.90381 0.90702 0.92480 0.94843 1.22068 0.96444 1.02658 0.95517 1.21612 0.95175 0.97960 1.00467 1.22110 1.00423 0.98250 0.96635 1.19595 0.78490 0.94481 0.91512 1.00486 1.21412 1.36114 1.05431 0.95950 0.91558 1.25943 0.93690 0.98771 0.99292 1.70189 1.36183 1.32435 1.14591 0.85594 0.78974 0.79521 0.77413 1.18813 1.20915 1.19433 1.88266 1.25364 1.44810 1.71017 1.20218 0.92431 0.97472 1.08083 0.91961 0.86171 0.91297 0.82405 0.83293 0.87211 0.91662 0.89768 0.89460 0.92402 0.91774 0.92739 0.93072 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -9.01 10.50 -92.41 -0.97 -9.98 16 3 C 0.12 3.65 6.69 22.51 0.15 3.81 16 4 C -0.21 -5.60 9.04 22.37 0.20 -5.40 16 5 C -0.08 -2.49 10.04 22.25 0.22 -2.26 16 6 C -0.15 -5.56 9.35 22.28 0.21 -5.36 16 7 C -0.04 -1.60 5.00 -19.88 -0.10 -1.69 16 8 C 0.12 5.00 2.86 29.88 0.09 5.09 16 9 H 0.03 1.53 8.05 -2.39 -0.02 1.51 16 10 C -0.13 -4.56 5.40 30.69 0.17 -4.39 16 11 C -0.11 -3.96 6.03 30.71 0.19 -3.77 16 12 C -0.14 -5.80 5.36 30.69 0.16 -5.63 16 13 C 0.21 11.55 2.50 29.88 0.07 11.62 16 14 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 15 C -0.55 -31.92 8.79 25.60 0.23 -31.69 16 16 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 17 C 0.03 1.49 5.40 84.65 0.46 1.94 16 18 N -0.90 -55.35 12.84 21.45 0.28 -55.08 16 19 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 23 O -0.37 -20.12 8.58 -148.98 -1.28 -21.40 16 24 C -0.16 -5.81 9.62 22.36 0.22 -5.60 16 25 H 0.06 0.90 7.66 -2.39 -0.02 0.88 16 26 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 28 H 0.16 3.01 6.30 -2.91 -0.02 3.00 16 29 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 30 H 0.11 4.59 7.62 -2.91 -0.02 4.57 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 33 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.13 4.31 8.06 -2.90 -0.02 4.29 16 Total: -1.00 -70.11 313.26 4.45 -65.65 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 1.03 Total: 16.06 kcal Atomic # 6 Polarization: -45.32 SS G_CDS: 3.37 Total: -41.95 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.28 Total: -55.08 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -2.25 Total: -31.38 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -70.11 4.45 -65.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310433602.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.298 kcal (2) G-P(sol) polarization free energy of solvation -70.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds