Wall clock time and date at job start Mon Mar 30 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35906 * 116.99965 * 2 1 4 4 C 1.38752 * 120.05370 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94162 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.05551 * 0.02562 * 5 4 3 7 7 C 1.38246 * 120.11517 * 359.70000 * 6 5 4 8 8 C 1.38168 * 120.05117 * 0.55538 * 7 6 5 9 9 C 1.50697 * 120.02823 * 179.74649 * 8 7 6 10 10 H 1.08997 * 109.48251 * 214.74192 * 9 8 7 11 11 C 1.53097 * 109.48105 * 94.72352 * 9 8 7 12 12 C 1.53174 * 109.16185 * 182.41126 * 11 9 8 13 13 C 1.53176 * 109.04061 * 56.97999 * 12 11 9 14 14 C 1.53091 * 109.21206 * 302.98570 * 13 12 11 15 15 H 1.09007 * 109.48127 * 177.62276 * 14 13 12 16 16 C 1.50700 * 109.48268 * 297.65632 * 14 13 12 17 17 H 1.08004 * 119.99853 * 0.02562 * 16 14 13 18 18 C 1.37875 * 120.00218 * 179.97438 * 16 14 13 19 19 N 1.31518 * 119.99788 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00255 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47285 * 89.99867 * 20 18 16 22 22 H 1.48497 * 109.47282 * 210.00255 * 20 18 16 23 23 H 1.48505 * 109.47105 * 330.00273 * 20 18 16 24 24 O 1.42902 * 109.48312 * 334.77915 * 9 8 7 25 25 H 1.09004 * 109.47262 * 60.00048 * 1 2 3 26 26 H 1.08999 * 109.47310 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47244 * 300.00019 * 1 2 3 28 28 H 1.07998 * 120.03140 * 0.04188 * 4 3 2 29 29 H 1.07996 * 119.96905 * 179.97438 * 5 4 3 30 30 H 1.08005 * 119.94408 * 179.97438 * 6 5 4 31 31 H 1.07994 * 119.97650 * 180.27518 * 7 6 5 32 32 H 1.08995 * 109.52587 * 62.49978 * 11 9 8 33 33 H 1.09004 * 109.57034 * 302.34479 * 11 9 8 34 34 H 1.08995 * 109.54500 * 297.10556 * 12 11 9 35 35 H 1.09007 * 109.61482 * 176.88750 * 12 11 9 36 36 H 1.09002 * 109.52410 * 62.92413 * 13 12 11 37 37 H 1.09004 * 109.52533 * 183.05059 * 13 12 11 38 38 H 0.97000 * 119.99592 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 0.0047 8 6 3.4311 1.2848 -0.0001 9 6 4.2537 0.0222 0.0009 10 1 3.7470 -0.7422 -0.5881 11 6 4.4269 -0.4731 1.4392 12 6 5.3138 -1.7220 1.4374 13 6 6.6523 -1.3835 0.7740 14 6 6.3944 -0.8537 -0.6390 15 1 7.3412 -0.5717 -1.0999 16 6 5.7329 -1.9266 -1.4651 17 1 5.5173 -2.8898 -1.0266 18 6 5.4019 -1.6782 -2.7803 19 7 5.6640 -0.5051 -3.3140 20 14 4.5813 -3.0078 -3.8040 21 1 3.1065 -2.8954 -3.6711 22 1 4.9639 -2.8420 -5.2293 23 1 5.0210 -4.3431 -3.3255 24 8 5.5373 0.2892 -0.5674 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2127 2.3204 -0.0003 29 1 1.3339 4.5113 -0.0019 30 1 3.7921 4.6381 -0.0024 31 1 5.1343 2.5752 0.0087 32 1 3.4519 -0.7192 1.8596 33 1 4.8964 0.3062 2.0396 34 1 4.8212 -2.5182 0.8794 35 1 5.4874 -2.0489 2.4627 36 1 7.1672 -0.6223 1.3601 37 1 7.2691 -2.2805 0.7197 38 1 5.4314 -0.3305 -4.2394 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310440409.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:45 Heat of formation + Delta-G solvation = -66.781049 kcal Electronic energy + Delta-G solvation = -20640.001259 eV Core-core repulsion = 17640.450604 eV Total energy + Delta-G solvation = -2999.550655 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.90234 -37.99326 -36.81861 -32.77798 -32.31410 -31.49592 -29.70935 -28.72012 -26.97072 -25.54103 -23.56881 -22.17556 -21.60449 -20.62379 -18.86239 -17.65578 -16.35664 -15.80935 -15.47532 -15.40537 -14.66696 -14.27961 -14.01042 -13.93818 -13.46588 -13.29298 -13.02880 -12.69836 -12.24230 -11.88755 -11.73069 -11.51934 -11.30380 -11.07007 -10.87632 -10.80516 -10.56445 -10.52125 -10.22056 -10.08989 -9.64438 -9.50200 -8.68187 -8.41085 -8.36012 -7.85782 -7.52012 -5.92718 -4.07062 1.80032 1.87573 3.32745 3.39575 3.41863 3.63774 4.21764 4.46152 4.96932 5.10604 5.27492 5.31059 5.34246 5.50650 5.55184 5.62312 5.76544 5.82658 5.87757 5.99973 6.14086 6.22742 6.33290 6.45109 6.50641 6.60689 6.65458 6.79952 6.86606 6.96176 7.02942 7.10016 7.13475 7.29126 7.35802 7.74241 7.82150 7.94150 8.28641 8.88873 9.14969 9.64865 11.11683 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.017099 B = 0.008220 C = 0.007352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.111408 B = 3405.697891 C = 3807.606483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.308 6.308 3 C 0.126 3.874 4 C -0.216 4.216 5 C -0.097 4.097 6 C -0.163 4.163 7 C -0.056 4.056 8 C -0.085 4.085 9 C 0.151 3.849 10 H 0.077 0.923 11 C -0.133 4.133 12 C -0.108 4.108 13 C -0.142 4.142 14 C 0.213 3.787 15 H 0.061 0.939 16 C -0.557 4.557 17 H 0.056 0.944 18 C 0.081 3.919 19 N -0.858 5.858 20 Si 0.880 3.120 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 O -0.369 6.369 25 H 0.051 0.949 26 H 0.095 0.905 27 H 0.050 0.950 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.136 0.864 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.055 0.945 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.205 4.626 7.760 12.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.221 6.221 3 C 0.081 3.919 4 C -0.235 4.235 5 C -0.115 4.115 6 C -0.181 4.181 7 C -0.074 4.074 8 C -0.086 4.086 9 C 0.093 3.907 10 H 0.095 0.905 11 C -0.170 4.170 12 C -0.145 4.145 13 C -0.180 4.180 14 C 0.158 3.842 15 H 0.079 0.921 16 C -0.594 4.594 17 H 0.075 0.925 18 C -0.125 4.125 19 N -0.494 5.494 20 Si 0.708 3.292 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 O -0.289 6.289 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.069 0.931 28 H 0.139 0.861 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.154 0.846 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.064 4.724 7.532 12.003 hybrid contribution -0.921 -0.803 -0.652 1.385 sum -8.985 3.921 6.880 11.977 Atomic orbital electron populations 1.22981 0.79439 1.03488 1.00752 1.86168 1.20404 1.26884 1.88651 1.18823 0.91679 0.84059 0.97304 1.21041 0.99304 0.92451 1.10662 1.20769 0.94690 0.96446 0.99577 1.21035 0.93783 0.98320 1.04983 1.20956 1.00778 0.90522 0.95117 1.19422 0.89959 0.96598 1.02607 1.20129 0.86781 0.91839 0.91979 0.90521 1.22056 0.99097 0.97832 0.98064 1.21435 0.96832 0.97784 0.98462 1.22186 0.96179 0.99812 0.99809 1.19724 0.90865 0.84684 0.88955 0.92130 1.21521 1.42123 0.99545 0.96256 0.92538 1.25004 0.94981 0.94888 0.97657 1.70053 1.45048 1.20914 1.13353 0.86796 0.80078 0.82636 0.79710 1.20570 1.21207 1.19845 1.87879 1.23137 1.36084 1.81766 0.93055 0.88620 0.93138 0.86124 0.86615 0.86452 0.84605 0.92711 0.92945 0.91318 0.94149 0.94102 0.92635 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.31 -5.58 9.63 -19.44 -0.19 -5.77 16 3 C 0.13 2.37 6.66 -39.22 -0.26 2.11 16 4 C -0.22 -3.38 9.04 -39.43 -0.36 -3.74 16 5 C -0.10 -1.43 10.04 -39.61 -0.40 -1.83 16 6 C -0.16 -2.60 10.04 -39.56 -0.40 -3.00 16 7 C -0.06 -1.07 9.35 -39.60 -0.37 -1.44 16 8 C -0.09 -1.77 5.08 -104.47 -0.53 -2.30 16 9 C 0.15 3.48 2.31 -27.83 -0.06 3.42 16 10 H 0.08 2.02 6.64 -51.93 -0.34 1.68 16 11 C -0.13 -2.65 5.40 -26.59 -0.14 -2.79 16 12 C -0.11 -2.14 5.78 -26.55 -0.15 -2.30 16 13 C -0.14 -3.03 5.59 -26.59 -0.15 -3.18 16 14 C 0.21 5.46 3.17 -27.84 -0.09 5.38 16 15 H 0.06 1.66 8.14 -51.92 -0.42 1.24 16 16 C -0.56 -15.25 6.60 -34.44 -0.23 -15.47 16 17 H 0.06 1.53 6.87 -52.48 -0.36 1.17 16 18 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 19 N -0.86 -25.31 12.84 55.43 0.71 -24.60 16 20 Si 0.88 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 24 O -0.37 -9.48 8.49 -35.23 -0.30 -9.78 16 25 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 26 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 28 H 0.12 1.53 6.30 -52.49 -0.33 1.20 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 31 H 0.14 2.65 7.36 -52.49 -0.39 2.27 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.46 6.85 -51.93 -0.36 1.10 16 35 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 306.85 15.07 4.62 4.62 Total: -1.00 -30.70 306.85 -7.93 -38.63 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.51 Total: 1.97 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -2.24 Total: -21.62 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.71 Total: -24.60 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.49 Total: -15.55 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.70 -7.93 -38.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310440409.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.151 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds