Wall clock time and date at job start Mon Mar 30 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35906 * 116.99965 * 2 1 4 4 C 1.38752 * 120.05370 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94162 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.05551 * 0.02562 * 5 4 3 7 7 C 1.38246 * 120.11517 * 359.70000 * 6 5 4 8 8 C 1.38168 * 120.05117 * 0.55538 * 7 6 5 9 9 C 1.50697 * 120.02823 * 179.74649 * 8 7 6 10 10 H 1.08997 * 109.48251 * 214.74192 * 9 8 7 11 11 C 1.53097 * 109.48105 * 94.72352 * 9 8 7 12 12 C 1.53174 * 109.16185 * 182.41126 * 11 9 8 13 13 C 1.53176 * 109.04061 * 56.97999 * 12 11 9 14 14 C 1.53091 * 109.21206 * 302.98570 * 13 12 11 15 15 H 1.09007 * 109.48127 * 177.62276 * 14 13 12 16 16 C 1.50700 * 109.48268 * 297.65632 * 14 13 12 17 17 H 1.08004 * 119.99853 * 0.02562 * 16 14 13 18 18 C 1.37875 * 120.00218 * 179.97438 * 16 14 13 19 19 N 1.31518 * 119.99788 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00255 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47285 * 89.99867 * 20 18 16 22 22 H 1.48497 * 109.47282 * 210.00255 * 20 18 16 23 23 H 1.48505 * 109.47105 * 330.00273 * 20 18 16 24 24 O 1.42902 * 109.48312 * 334.77915 * 9 8 7 25 25 H 1.09004 * 109.47262 * 60.00048 * 1 2 3 26 26 H 1.08999 * 109.47310 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47244 * 300.00019 * 1 2 3 28 28 H 1.07998 * 120.03140 * 0.04188 * 4 3 2 29 29 H 1.07996 * 119.96905 * 179.97438 * 5 4 3 30 30 H 1.08005 * 119.94408 * 179.97438 * 6 5 4 31 31 H 1.07994 * 119.97650 * 180.27518 * 7 6 5 32 32 H 1.08995 * 109.52587 * 62.49978 * 11 9 8 33 33 H 1.09004 * 109.57034 * 302.34479 * 11 9 8 34 34 H 1.08995 * 109.54500 * 297.10556 * 12 11 9 35 35 H 1.09007 * 109.61482 * 176.88750 * 12 11 9 36 36 H 1.09002 * 109.52410 * 62.92413 * 13 12 11 37 37 H 1.09004 * 109.52533 * 183.05059 * 13 12 11 38 38 H 0.97000 * 119.99592 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 0.0047 8 6 3.4311 1.2848 -0.0001 9 6 4.2537 0.0222 0.0009 10 1 3.7470 -0.7422 -0.5881 11 6 4.4269 -0.4731 1.4392 12 6 5.3138 -1.7220 1.4374 13 6 6.6523 -1.3835 0.7740 14 6 6.3944 -0.8537 -0.6390 15 1 7.3412 -0.5717 -1.0999 16 6 5.7329 -1.9266 -1.4651 17 1 5.5173 -2.8898 -1.0266 18 6 5.4019 -1.6782 -2.7803 19 7 5.6640 -0.5051 -3.3140 20 14 4.5813 -3.0078 -3.8040 21 1 3.1065 -2.8954 -3.6711 22 1 4.9639 -2.8420 -5.2293 23 1 5.0210 -4.3431 -3.3255 24 8 5.5373 0.2892 -0.5674 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2127 2.3204 -0.0003 29 1 1.3339 4.5113 -0.0019 30 1 3.7921 4.6381 -0.0024 31 1 5.1343 2.5752 0.0087 32 1 3.4519 -0.7192 1.8596 33 1 4.8964 0.3062 2.0396 34 1 4.8212 -2.5182 0.8794 35 1 5.4874 -2.0489 2.4627 36 1 7.1672 -0.6223 1.3601 37 1 7.2691 -2.2805 0.7197 38 1 5.4314 -0.3305 -4.2394 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310440409.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:45 Heat of formation + Delta-G solvation = -84.801878 kcal Electronic energy + Delta-G solvation = -20640.782701 eV Core-core repulsion = 17640.450604 eV Total energy + Delta-G solvation = -3000.332097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.25422 -39.71371 -38.13103 -34.73876 -34.07392 -33.23573 -30.99590 -30.32344 -28.06488 -27.52587 -25.22084 -23.95658 -22.91210 -22.10767 -20.71279 -18.92606 -18.32797 -17.22945 -16.97484 -16.66262 -16.56691 -15.88649 -15.68362 -15.29098 -15.19292 -14.92321 -14.47068 -14.32177 -13.67194 -13.57973 -13.22679 -13.00005 -12.84301 -12.78784 -12.57455 -12.44112 -12.16283 -11.95275 -11.84106 -11.78220 -11.50772 -11.17748 -10.70437 -10.45583 -9.87356 -9.52188 -8.97250 -8.08461 -6.28372 0.47766 0.56905 1.35745 1.36806 1.46349 2.39746 2.48259 2.88979 3.12430 3.50079 3.95690 4.08448 4.16182 4.24127 4.26753 4.32867 4.40876 4.41477 4.57142 4.60592 4.68862 4.71442 4.75725 4.90539 4.96440 5.01874 5.16967 5.26833 5.27723 5.39659 5.43753 5.49513 5.57894 5.69192 5.75899 5.83245 5.99774 6.18585 6.56980 6.77560 7.17174 7.48174 8.95916 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.017099 B = 0.008220 C = 0.007352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.111408 B = 3405.697891 C = 3807.606483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.112 3.888 4 C -0.210 4.210 5 C -0.085 4.085 6 C -0.162 4.162 7 C -0.076 4.076 8 C -0.126 4.126 9 C 0.157 3.843 10 H 0.032 0.968 11 C -0.124 4.124 12 C -0.104 4.104 13 C -0.135 4.135 14 C 0.205 3.795 15 H 0.028 0.972 16 C -0.560 4.560 17 H 0.055 0.945 18 C 0.029 3.971 19 N -0.894 5.894 20 Si 0.941 3.059 21 H -0.280 1.280 22 H -0.281 1.281 23 H -0.262 1.262 24 O -0.389 6.389 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.155 0.845 29 H 0.160 0.840 30 H 0.146 0.854 31 H 0.117 0.883 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.372 5.280 8.912 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.067 3.933 4 C -0.229 4.229 5 C -0.103 4.103 6 C -0.180 4.180 7 C -0.094 4.094 8 C -0.127 4.127 9 C 0.098 3.902 10 H 0.050 0.950 11 C -0.162 4.162 12 C -0.141 4.141 13 C -0.172 4.172 14 C 0.149 3.851 15 H 0.046 0.954 16 C -0.598 4.598 17 H 0.074 0.926 18 C -0.173 4.173 19 N -0.532 5.532 20 Si 0.767 3.233 21 H -0.206 1.206 22 H -0.207 1.207 23 H -0.187 1.187 24 O -0.309 6.309 25 H 0.079 0.921 26 H 0.129 0.871 27 H 0.093 0.907 28 H 0.173 0.827 29 H 0.177 0.823 30 H 0.163 0.837 31 H 0.135 0.865 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.236 5.361 8.697 14.462 hybrid contribution -0.313 -0.948 -0.986 1.403 sum -10.549 4.414 7.710 13.792 Atomic orbital electron populations 1.23322 0.76733 1.05190 1.02321 1.86121 1.23340 1.27203 1.88723 1.18983 0.91231 0.85406 0.97697 1.21454 1.00910 0.91571 1.08941 1.21288 0.94346 0.97778 0.96858 1.21347 0.94627 0.98199 1.03853 1.20933 1.00269 0.91491 0.96754 1.19434 0.91201 0.96042 1.06015 1.20039 0.85129 0.92384 0.92606 0.95003 1.21971 0.99871 0.97977 0.96372 1.21419 0.95532 0.97163 1.00001 1.22063 0.97485 1.00318 0.97381 1.19661 0.89621 0.84490 0.91304 0.95390 1.21792 1.41511 0.99815 0.96673 0.92636 1.25754 0.95700 0.96858 0.98959 1.70192 1.46660 1.22854 1.13494 0.85828 0.78825 0.80445 0.78238 1.20609 1.20696 1.18664 1.87816 1.24477 1.35948 1.82621 0.92102 0.87095 0.90736 0.82730 0.82262 0.83669 0.86529 0.91484 0.92038 0.93096 0.90538 0.92648 0.91859 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.54 16 2 O -0.34 -12.19 9.63 -92.49 -0.89 -13.08 16 3 C 0.11 4.13 6.66 22.51 0.15 4.28 16 4 C -0.21 -5.95 9.04 22.37 0.20 -5.75 16 5 C -0.09 -2.19 10.04 22.25 0.22 -1.97 16 6 C -0.16 -4.86 10.04 22.28 0.22 -4.64 16 7 C -0.08 -2.96 9.35 22.25 0.21 -2.75 16 8 C -0.13 -5.37 5.08 -19.77 -0.10 -5.47 16 9 C 0.16 7.48 2.31 29.88 0.07 7.55 16 10 H 0.03 1.78 6.64 -2.39 -0.02 1.77 16 11 C -0.12 -4.97 5.40 30.69 0.17 -4.81 16 12 C -0.10 -4.07 5.78 30.71 0.18 -3.89 16 13 C -0.13 -5.78 5.59 30.68 0.17 -5.61 16 14 C 0.21 10.97 3.17 29.88 0.09 11.06 16 15 H 0.03 1.65 8.14 -2.38 -0.02 1.63 16 16 C -0.56 -31.74 6.60 25.60 0.17 -31.58 16 17 H 0.06 3.08 6.87 -2.91 -0.02 3.06 16 18 C 0.03 1.71 5.40 84.65 0.46 2.16 16 19 N -0.89 -54.97 12.84 21.45 0.28 -54.70 16 20 Si 0.94 45.32 29.54 68.60 2.03 47.35 16 21 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 23 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 24 O -0.39 -20.99 8.49 -148.98 -1.26 -22.25 16 25 H 0.06 1.25 7.66 -2.39 -0.02 1.23 16 26 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.07 1.32 7.66 -2.38 -0.02 1.30 16 28 H 0.16 3.23 6.30 -2.91 -0.02 3.21 16 29 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 30 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 31 H 0.12 4.81 7.36 -2.91 -0.02 4.79 16 32 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.05 2.16 6.85 -2.39 -0.02 2.15 16 35 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 38 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -69.96 306.85 4.51 -65.45 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 1.04 Total: 17.10 kcal Atomic # 6 Polarization: -43.19 SS G_CDS: 3.32 Total: -39.87 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.28 Total: -54.70 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -2.16 Total: -35.33 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -69.96 4.51 -65.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310440409.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.349 kcal (2) G-P(sol) polarization free energy of solvation -69.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds