Wall clock time and date at job start Mon Mar 30 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35902 * 117.00317 * 2 1 4 4 C 1.38752 * 120.05374 * 0.21002 * 3 2 1 5 5 C 1.38129 * 119.93882 * 180.23009 * 4 3 2 6 6 C 1.38287 * 120.05821 * 359.81477 * 5 4 3 7 7 C 1.38248 * 120.10948 * 359.97438 * 6 5 4 8 8 C 1.38161 * 120.05782 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.02979 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.48161 * 144.99821 * 9 8 7 11 11 C 1.53092 * 109.47775 * 265.02353 * 9 8 7 12 12 C 1.53207 * 109.14859 * 177.59222 * 11 9 8 13 13 C 1.53178 * 109.03992 * 303.02293 * 12 11 9 14 14 C 1.53097 * 109.16320 * 56.98185 * 13 12 11 15 15 H 1.09000 * 109.47425 * 62.37437 * 14 13 12 16 16 C 1.50703 * 109.48754 * 182.40069 * 14 13 12 17 17 H 1.07993 * 120.00441 * 359.94925 * 16 14 13 18 18 C 1.37881 * 119.99528 * 179.97438 * 16 14 13 19 19 N 1.31515 * 120.00192 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 119.99826 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47308 * 59.99551 * 20 18 16 22 22 H 1.48496 * 109.47109 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46900 * 299.99608 * 20 18 16 24 24 O 1.42898 * 109.41490 * 302.39102 * 14 13 12 25 25 H 1.08998 * 109.47125 * 59.99697 * 1 2 3 26 26 H 1.08998 * 109.47638 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46892 * 300.00087 * 1 2 3 28 28 H 1.07999 * 120.02895 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.96801 * 179.79040 * 5 4 3 30 30 H 1.07995 * 119.94293 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.97206 * 179.97438 * 7 6 5 32 32 H 1.08999 * 109.52366 * 297.50292 * 11 9 8 33 33 H 1.08992 * 109.52532 * 57.69971 * 11 9 8 34 34 H 1.09004 * 109.54239 * 183.15817 * 12 11 9 35 35 H 1.09000 * 109.61720 * 62.93376 * 12 11 9 36 36 H 1.09003 * 109.52669 * 297.07816 * 13 12 11 37 37 H 1.09005 * 109.57705 * 176.91879 * 13 12 11 38 38 H 0.96994 * 120.00102 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0044 5 6 1.9211 3.6047 -0.0004 6 6 3.3021 3.6757 -0.0057 7 6 4.0561 2.5169 -0.0057 8 6 3.4312 1.2847 0.0001 9 6 4.2537 0.0219 0.0007 10 1 3.7490 -0.7404 0.5943 11 6 4.4221 -0.4783 -1.4363 12 6 5.3090 -1.7275 -1.4329 13 6 6.6496 -1.3868 -0.7750 14 6 6.3950 -0.8513 0.6365 15 1 5.9183 -1.6251 1.2383 16 6 7.7051 -0.4584 1.2691 17 1 8.6274 -0.5791 0.7205 18 6 7.7263 0.0547 2.5487 19 7 6.6032 0.2007 3.2173 20 14 9.3501 0.5424 3.3327 21 1 9.9989 1.5967 2.5125 22 1 9.1025 1.0627 4.7013 23 1 10.2399 -0.6443 3.4072 24 8 5.5392 0.2908 0.5640 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2129 2.3204 0.0083 29 1 1.3343 4.5113 -0.0004 30 1 3.7924 4.6379 -0.0099 31 1 5.1345 2.5749 -0.0103 32 1 3.4456 -0.7257 -1.8527 33 1 4.8902 0.2990 -2.0401 34 1 5.4792 -2.0567 -2.4581 35 1 4.8188 -2.5228 -0.8713 36 1 7.1628 -0.6278 -1.3654 37 1 7.2671 -2.2834 -0.7185 38 1 6.6181 0.5620 4.1173 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310440413.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:49 Heat of formation + Delta-G solvation = -68.318282 kcal Electronic energy + Delta-G solvation = -20243.300648 eV Core-core repulsion = 17243.683333 eV Total energy + Delta-G solvation = -2999.617315 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.98988 -38.00147 -36.87211 -33.05202 -32.41748 -31.51099 -29.76656 -28.89086 -27.07525 -25.57530 -23.68284 -22.01061 -21.62251 -20.63458 -19.10450 -17.74263 -16.56777 -15.90610 -15.56865 -15.48450 -14.59525 -14.36915 -14.18970 -14.02285 -13.61618 -13.41070 -13.11056 -12.69928 -12.34773 -12.07436 -11.87965 -11.61495 -11.30684 -10.90947 -10.89076 -10.81569 -10.59171 -10.55649 -10.30728 -10.16983 -9.80939 -9.51406 -8.81300 -8.52619 -8.38575 -7.92773 -7.63226 -5.95548 -4.08375 1.73921 1.81469 3.35332 3.39998 3.42269 3.52669 4.15592 4.45657 4.85036 5.02729 5.19973 5.22274 5.27932 5.46583 5.49069 5.56046 5.66442 5.69803 5.71422 5.89351 6.03659 6.16411 6.22511 6.28762 6.38132 6.47952 6.55978 6.70376 6.78269 6.82171 6.93034 6.96562 7.00264 7.07461 7.26017 7.58666 7.70270 7.94742 8.34493 8.83795 9.19538 9.61731 11.11595 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020659 B = 0.006577 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.009823 B = 4256.240201 C = 4917.647690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.125 3.875 4 C -0.216 4.216 5 C -0.094 4.094 6 C -0.162 4.162 7 C -0.049 4.049 8 C -0.088 4.088 9 C 0.132 3.868 10 H 0.054 0.946 11 C -0.135 4.135 12 C -0.119 4.119 13 C -0.144 4.144 14 C 0.221 3.779 15 H 0.013 0.987 16 C -0.527 4.527 17 H 0.063 0.937 18 C 0.079 3.921 19 N -0.858 5.858 20 Si 0.890 3.110 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.276 1.276 24 O -0.351 6.351 25 H 0.051 0.949 26 H 0.095 0.905 27 H 0.052 0.948 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.141 0.859 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.267 2.407 -7.401 13.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.080 3.920 4 C -0.235 4.235 5 C -0.112 4.112 6 C -0.180 4.180 7 C -0.067 4.067 8 C -0.089 4.089 9 C 0.073 3.927 10 H 0.071 0.929 11 C -0.173 4.173 12 C -0.157 4.157 13 C -0.182 4.182 14 C 0.166 3.834 15 H 0.031 0.969 16 C -0.564 4.564 17 H 0.081 0.919 18 C -0.128 4.128 19 N -0.493 5.493 20 Si 0.718 3.282 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.202 1.202 24 O -0.270 6.270 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.070 0.930 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.158 0.842 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.215 2.442 -7.162 13.529 hybrid contribution 0.364 0.258 0.429 0.619 sum -10.851 2.700 -6.733 13.052 Atomic orbital electron populations 1.22981 0.79281 1.03467 1.00904 1.86118 1.20564 1.27062 1.88830 1.18798 0.91573 0.84025 0.97577 1.21032 0.99301 0.92417 1.10743 1.20805 0.94703 0.96504 0.99209 1.21071 0.93747 0.98457 1.04720 1.21030 1.01178 0.90397 0.94124 1.19268 0.89687 0.96350 1.03583 1.20372 0.87878 0.91931 0.92566 0.92857 1.22093 0.99146 0.98014 0.98019 1.21616 0.97320 0.97121 0.99630 1.22264 0.95255 1.00499 1.00169 1.19678 0.89526 0.85349 0.88892 0.96926 1.20954 0.91198 1.45581 0.98706 0.91892 1.25068 0.96069 0.94556 0.97065 1.70039 1.25755 1.42339 1.11205 0.86710 0.84136 0.79008 0.78388 1.20093 1.21248 1.20159 1.88308 1.21211 1.36463 1.81050 0.93087 0.88616 0.92960 0.86068 0.86516 0.86301 0.84152 0.92510 0.92054 0.93200 0.92663 0.92542 0.92537 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -5.13 9.64 -19.43 -0.19 -5.32 16 3 C 0.13 2.20 6.66 -39.22 -0.26 1.94 16 4 C -0.22 -3.21 9.04 -39.43 -0.36 -3.57 16 5 C -0.09 -1.35 10.04 -39.60 -0.40 -1.75 16 6 C -0.16 -2.59 10.04 -39.56 -0.40 -2.98 16 7 C -0.05 -0.95 9.35 -39.61 -0.37 -1.32 16 8 C -0.09 -1.77 5.08 -104.47 -0.53 -2.30 16 9 C 0.13 2.89 2.58 -27.84 -0.07 2.82 16 10 H 0.05 1.26 7.70 -51.93 -0.40 0.86 16 11 C -0.13 -2.56 5.40 -26.58 -0.14 -2.70 16 12 C -0.12 -2.22 6.03 -26.53 -0.16 -2.38 16 13 C -0.14 -3.13 5.36 -26.59 -0.14 -3.27 16 14 C 0.22 5.81 2.50 -27.83 -0.07 5.74 16 15 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 16 C -0.53 -14.93 8.80 -34.44 -0.30 -15.23 16 17 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 18 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 19 N -0.86 -25.62 12.84 55.43 0.71 -24.91 16 20 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 O -0.35 -9.16 8.27 -35.23 -0.29 -9.45 16 25 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 26 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 28 H 0.12 1.44 6.30 -52.49 -0.33 1.10 16 29 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.14 2.91 7.35 -52.49 -0.39 2.52 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 311.67 15.07 4.70 4.70 Total: -1.00 -31.41 311.67 -8.08 -39.49 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.68 Total: 0.58 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -2.31 Total: -21.55 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.71 Total: -24.91 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.48 Total: -14.77 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.41 -8.08 -39.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310440413.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.832 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds