Wall clock time and date at job start Mon Mar 30 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35902 * 117.00317 * 2 1 4 4 C 1.38752 * 120.05374 * 0.21002 * 3 2 1 5 5 C 1.38129 * 119.93882 * 180.23009 * 4 3 2 6 6 C 1.38287 * 120.05821 * 359.81477 * 5 4 3 7 7 C 1.38248 * 120.10948 * 359.97438 * 6 5 4 8 8 C 1.38161 * 120.05782 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.02979 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.48161 * 144.99821 * 9 8 7 11 11 C 1.53092 * 109.47775 * 265.02353 * 9 8 7 12 12 C 1.53207 * 109.14859 * 177.59222 * 11 9 8 13 13 C 1.53178 * 109.03992 * 303.02293 * 12 11 9 14 14 C 1.53097 * 109.16320 * 56.98185 * 13 12 11 15 15 H 1.09000 * 109.47425 * 62.37437 * 14 13 12 16 16 C 1.50703 * 109.48754 * 182.40069 * 14 13 12 17 17 H 1.07993 * 120.00441 * 359.94925 * 16 14 13 18 18 C 1.37881 * 119.99528 * 179.97438 * 16 14 13 19 19 N 1.31515 * 120.00192 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 119.99826 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47308 * 59.99551 * 20 18 16 22 22 H 1.48496 * 109.47109 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46900 * 299.99608 * 20 18 16 24 24 O 1.42898 * 109.41490 * 302.39102 * 14 13 12 25 25 H 1.08998 * 109.47125 * 59.99697 * 1 2 3 26 26 H 1.08998 * 109.47638 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46892 * 300.00087 * 1 2 3 28 28 H 1.07999 * 120.02895 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.96801 * 179.79040 * 5 4 3 30 30 H 1.07995 * 119.94293 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.97206 * 179.97438 * 7 6 5 32 32 H 1.08999 * 109.52366 * 297.50292 * 11 9 8 33 33 H 1.08992 * 109.52532 * 57.69971 * 11 9 8 34 34 H 1.09004 * 109.54239 * 183.15817 * 12 11 9 35 35 H 1.09000 * 109.61720 * 62.93376 * 12 11 9 36 36 H 1.09003 * 109.52669 * 297.07816 * 13 12 11 37 37 H 1.09005 * 109.57705 * 176.91879 * 13 12 11 38 38 H 0.96994 * 120.00102 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0044 5 6 1.9211 3.6047 -0.0004 6 6 3.3021 3.6757 -0.0057 7 6 4.0561 2.5169 -0.0057 8 6 3.4312 1.2847 0.0001 9 6 4.2537 0.0219 0.0007 10 1 3.7490 -0.7404 0.5943 11 6 4.4221 -0.4783 -1.4363 12 6 5.3090 -1.7275 -1.4329 13 6 6.6496 -1.3868 -0.7750 14 6 6.3950 -0.8513 0.6365 15 1 5.9183 -1.6251 1.2383 16 6 7.7051 -0.4584 1.2691 17 1 8.6274 -0.5791 0.7205 18 6 7.7263 0.0547 2.5487 19 7 6.6032 0.2007 3.2173 20 14 9.3501 0.5424 3.3327 21 1 9.9989 1.5967 2.5125 22 1 9.1025 1.0627 4.7013 23 1 10.2399 -0.6443 3.4072 24 8 5.5392 0.2908 0.5640 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2129 2.3204 0.0083 29 1 1.3343 4.5113 -0.0004 30 1 3.7924 4.6379 -0.0099 31 1 5.1345 2.5749 -0.0103 32 1 3.4456 -0.7257 -1.8527 33 1 4.8902 0.2990 -2.0401 34 1 5.4792 -2.0567 -2.4581 35 1 4.8188 -2.5228 -0.8713 36 1 7.1628 -0.6278 -1.3654 37 1 7.2671 -2.2834 -0.7185 38 1 6.6181 0.5620 4.1173 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310440413.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:48 Heat of formation + Delta-G solvation = -87.021852 kcal Electronic energy + Delta-G solvation = -20244.111696 eV Core-core repulsion = 17243.683333 eV Total energy + Delta-G solvation = -3000.428362 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.28979 -39.68349 -38.14857 -35.02967 -34.15122 -33.24412 -31.03036 -30.51189 -28.08060 -27.49717 -25.32830 -23.76400 -22.93638 -22.12847 -20.84172 -19.03569 -18.55793 -17.29732 -17.01733 -16.62163 -16.48555 -16.15125 -15.76143 -15.31064 -15.24342 -14.89078 -14.51565 -14.34865 -14.01192 -13.58059 -13.22903 -12.88721 -12.81335 -12.69950 -12.53121 -12.44284 -12.11139 -11.96070 -11.90583 -11.82883 -11.74269 -11.18609 -10.85643 -10.55880 -9.93438 -9.59007 -9.02244 -8.13043 -6.34642 0.43850 0.53509 1.40638 1.44188 1.51679 2.41277 2.44506 2.84370 3.02257 3.51566 3.91306 4.03439 4.09766 4.13673 4.17130 4.30110 4.37508 4.42881 4.48524 4.50531 4.58471 4.62484 4.73912 4.85272 4.88612 4.96521 5.06901 5.12156 5.18970 5.21844 5.27896 5.42783 5.51940 5.60122 5.70913 5.78219 5.95677 6.21856 6.52994 6.68217 7.21392 7.41872 8.94424 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020659 B = 0.006577 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.009823 B = 4256.240201 C = 4917.647690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.118 3.882 4 C -0.209 4.209 5 C -0.082 4.082 6 C -0.164 4.164 7 C -0.075 4.075 8 C -0.126 4.126 9 C 0.130 3.870 10 H 0.024 0.976 11 C -0.124 4.124 12 C -0.114 4.114 13 C -0.136 4.136 14 C 0.216 3.784 15 H -0.027 1.027 16 C -0.551 4.551 17 H 0.067 0.933 18 C 0.024 3.976 19 N -0.897 5.897 20 Si 0.963 3.037 21 H -0.269 1.269 22 H -0.283 1.283 23 H -0.264 1.264 24 O -0.376 6.376 25 H 0.072 0.928 26 H 0.114 0.886 27 H 0.062 0.938 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.141 0.859 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.703 3.532 -8.508 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.073 3.927 4 C -0.227 4.227 5 C -0.099 4.099 6 C -0.182 4.182 7 C -0.093 4.093 8 C -0.127 4.127 9 C 0.072 3.928 10 H 0.042 0.958 11 C -0.162 4.162 12 C -0.151 4.151 13 C -0.174 4.174 14 C 0.160 3.840 15 H -0.009 1.009 16 C -0.588 4.588 17 H 0.085 0.915 18 C -0.178 4.178 19 N -0.534 5.534 20 Si 0.787 3.213 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.188 1.188 24 O -0.296 6.296 25 H 0.091 0.909 26 H 0.133 0.867 27 H 0.081 0.919 28 H 0.177 0.823 29 H 0.178 0.822 30 H 0.159 0.841 31 H 0.127 0.873 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.657 3.554 -8.287 15.540 hybrid contribution 0.662 -0.099 0.770 1.020 sum -11.995 3.456 -7.517 14.572 Atomic orbital electron populations 1.23350 0.76447 1.05401 1.02401 1.86084 1.23545 1.26932 1.88712 1.18881 0.90854 0.85527 0.97464 1.21472 1.01045 0.91422 1.08752 1.21303 0.94064 0.98048 0.96507 1.21326 0.94806 0.98038 1.04054 1.20900 1.00065 0.91829 0.96508 1.19256 0.91140 0.95503 1.06790 1.20447 0.85967 0.92865 0.93550 0.95840 1.21995 1.00255 0.97973 0.95986 1.21603 0.95290 0.96936 1.01298 1.22113 0.97315 1.00470 0.97480 1.19564 0.88773 0.84611 0.91014 1.00935 1.21395 0.92303 1.45637 0.99510 0.91514 1.25971 0.99881 0.94358 0.97615 1.70201 1.28254 1.43462 1.11472 0.85566 0.79458 0.79016 0.77280 1.19388 1.20846 1.18825 1.88215 1.23084 1.36253 1.82058 0.90930 0.86732 0.91890 0.82347 0.82161 0.84069 0.87295 0.90497 0.92046 0.89534 0.92767 0.92676 0.91697 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.34 -10.88 9.64 -92.44 -0.89 -11.77 16 3 C 0.12 4.07 6.66 22.51 0.15 4.22 16 4 C -0.21 -5.56 9.04 22.37 0.20 -5.36 16 5 C -0.08 -2.06 10.04 22.26 0.22 -1.84 16 6 C -0.16 -5.06 10.04 22.28 0.22 -4.83 16 7 C -0.07 -2.99 9.35 22.25 0.21 -2.78 16 8 C -0.13 -5.24 5.08 -19.77 -0.10 -5.34 16 9 C 0.13 6.04 2.58 29.88 0.08 6.12 16 10 H 0.02 1.20 7.70 -2.39 -0.02 1.18 16 11 C -0.12 -4.77 5.40 30.69 0.17 -4.60 16 12 C -0.11 -4.21 6.03 30.72 0.19 -4.03 16 13 C -0.14 -6.03 5.36 30.69 0.16 -5.86 16 14 C 0.22 12.00 2.50 29.88 0.07 12.07 16 15 H -0.03 -1.65 8.14 -2.39 -0.02 -1.67 16 16 C -0.55 -32.46 8.80 25.60 0.23 -32.23 16 17 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 18 C 0.02 1.42 5.40 84.66 0.46 1.88 16 19 N -0.90 -56.09 12.84 21.45 0.28 -55.81 16 20 Si 0.96 45.18 29.54 68.60 2.03 47.20 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 24 O -0.38 -20.93 8.27 -148.98 -1.23 -22.16 16 25 H 0.07 1.09 7.67 -2.39 -0.02 1.08 16 26 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.06 1.08 7.65 -2.39 -0.02 1.06 16 28 H 0.16 2.98 6.30 -2.91 -0.02 2.96 16 29 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 30 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 31 H 0.11 4.90 7.35 -2.91 -0.02 4.88 16 32 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.06 2.71 8.14 -2.38 -0.02 2.69 16 38 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -72.72 311.67 4.58 -68.14 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 1.03 Total: 15.52 kcal Atomic # 6 Polarization: -44.49 SS G_CDS: 3.37 Total: -41.12 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.28 Total: -55.81 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -2.12 Total: -33.93 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -72.72 4.58 -68.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310440413.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.881 kcal (2) G-P(sol) polarization free energy of solvation -72.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds