Wall clock time and date at job start Mon Mar 30 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00135 * 2 1 4 4 H 1.09002 * 110.01082 * 29.94329 * 3 2 1 5 5 C 1.53871 * 110.03613 * 268.55198 * 3 2 1 6 6 C 1.54270 * 106.59452 * 240.71621 * 5 3 2 7 7 C 1.54885 * 104.19512 * 336.38675 * 6 5 3 8 8 C 1.54264 * 110.02876 * 151.38058 * 3 2 1 9 9 H 1.08997 * 110.48806 * 24.08904 * 8 3 2 10 10 O 1.42908 * 110.48691 * 261.57576 * 8 3 2 11 11 C 1.35670 * 117.00094 * 156.90997 * 10 8 3 12 12 C 1.39314 * 119.81630 * 5.15622 * 11 10 8 13 13 C 1.36438 * 120.18574 * 179.76642 * 12 11 10 14 14 C 1.40837 * 119.80832 * 0.50378 * 13 12 11 15 15 C 1.41219 * 120.18023 * 179.76740 * 14 13 12 16 16 H 1.07999 * 119.99443 * 26.30685 * 15 14 13 17 17 C 1.39884 * 120.00091 * 206.30952 * 15 14 13 18 18 N 1.30881 * 120.00390 * 13.65470 * 17 15 14 19 19 Si 1.86800 * 119.99936 * 193.66124 * 17 15 14 20 20 H 1.48497 * 109.47265 * 89.99743 * 19 17 15 21 21 H 1.48504 * 109.47184 * 209.99562 * 19 17 15 22 22 H 1.48503 * 109.47016 * 329.99222 * 19 17 15 23 23 C 1.40833 * 119.64417 * 359.75175 * 14 13 12 24 24 C 1.36442 * 119.81043 * 359.97438 * 23 14 13 25 25 H 1.09002 * 109.46942 * 59.99823 * 1 2 3 26 26 H 1.09008 * 109.47063 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47153 * 299.99470 * 1 2 3 28 28 H 1.09003 * 110.03350 * 359.97438 * 5 3 2 29 29 H 1.08994 * 110.03292 * 121.43085 * 5 3 2 30 30 H 1.08997 * 110.48634 * 95.06948 * 6 5 3 31 31 H 1.09001 * 110.48281 * 217.70929 * 6 5 3 32 32 H 1.09002 * 110.75786 * 279.63138 * 7 6 5 33 33 H 1.09000 * 110.91511 * 156.33393 * 7 6 5 34 34 H 1.07998 * 119.90857 * 359.97438 * 12 11 10 35 35 H 1.07997 * 120.09593 * 180.25512 * 13 12 11 36 36 H 0.96994 * 120.00757 * 180.02562 * 18 17 15 37 37 H 1.07999 * 120.09902 * 179.97438 * 23 14 13 38 38 H 1.07997 * 119.90861 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3512 2.0072 0.5112 5 6 2.2581 1.7722 -1.4451 6 6 3.7773 2.0047 -1.5786 7 6 4.2516 2.2599 -0.1264 8 6 3.3874 1.2706 0.6942 9 1 3.8102 0.2668 0.6530 10 8 3.2756 1.7096 2.0496 11 6 4.2388 1.2981 2.9118 12 6 5.3307 0.5750 2.4368 13 6 6.3062 0.1615 3.2965 14 6 6.2015 0.4585 4.6692 15 6 7.2041 0.0301 5.5668 16 1 8.2117 -0.1317 5.2135 17 6 6.8920 -0.1847 6.9133 18 7 5.6412 -0.2521 7.2926 19 14 8.2606 -0.3753 8.1703 20 1 8.6150 0.9570 8.7221 21 1 7.8021 -1.2608 9.2708 22 1 9.4525 -0.9739 7.5174 23 6 5.0917 1.1853 5.1420 24 6 4.1278 1.5963 4.2681 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.9354 1.0028 -2.1466 29 1 1.7201 2.7009 -1.6350 30 1 4.2640 1.1199 -1.9890 31 1 3.9765 2.8752 -2.2036 32 1 4.0486 3.2888 0.1710 33 1 5.3113 2.0297 -0.0171 34 1 5.4071 0.3440 1.3846 35 1 7.1541 -0.3954 2.9261 36 1 5.4247 -0.4007 8.2263 37 1 5.0038 1.4168 6.1932 38 1 3.2763 2.1541 4.6289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310446081.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:46 Heat of formation + Delta-G solvation = -73.744366 kcal Electronic energy + Delta-G solvation = -19474.929591 eV Core-core repulsion = 16475.076983 eV Total energy + Delta-G solvation = -2999.852607 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.62798 -38.03524 -36.41100 -35.16417 -33.21247 -29.83473 -29.05473 -28.20049 -27.80364 -26.01099 -24.66681 -21.67229 -20.86650 -20.42492 -19.80813 -17.60671 -17.25649 -16.39697 -15.67771 -15.23636 -15.09968 -14.47041 -14.25326 -13.87715 -13.73448 -13.28884 -13.09986 -12.52701 -12.17064 -12.05616 -11.92141 -11.73377 -11.44448 -11.18581 -11.09222 -11.04375 -10.96972 -10.68185 -10.53020 -10.30001 -9.90043 -9.77082 -9.49140 -9.25801 -9.01563 -7.59232 -6.94596 -6.64904 -4.22666 2.81574 3.00101 3.11303 3.14727 3.24105 3.60677 3.99074 4.22823 4.55514 4.68766 4.81337 4.95274 5.24318 5.33158 5.34808 5.48903 5.51760 5.58526 5.62842 5.71254 5.81594 5.84772 5.94638 5.97480 6.10935 6.20369 6.29593 6.33939 6.78570 7.02944 7.16288 7.22963 7.26283 7.52925 7.60894 7.84713 8.05114 8.25792 8.50741 8.70414 8.95126 9.03360 10.29299 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.037804 B = 0.004202 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.490901 B = 6661.272454 C = 7037.398390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.086 3.914 4 H 0.074 0.926 5 C -0.142 4.142 6 C -0.120 4.120 7 C -0.144 4.144 8 C 0.090 3.910 9 H 0.084 0.916 10 O -0.320 6.320 11 C -0.001 4.001 12 C -0.168 4.168 13 C -0.194 4.194 14 C 0.086 3.914 15 C -0.463 4.463 16 H 0.075 0.925 17 C 0.073 3.927 18 N -0.805 5.805 19 Si 0.909 3.091 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.264 1.264 23 C -0.130 4.130 24 C -0.123 4.123 25 H 0.038 0.962 26 H 0.084 0.916 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.279 0.721 37 H 0.128 0.872 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.373 3.305 -12.087 14.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C 0.028 3.972 4 H 0.092 0.908 5 C -0.180 4.180 6 C -0.157 4.157 7 C -0.181 4.181 8 C 0.032 3.968 9 H 0.102 0.898 10 O -0.236 6.236 11 C -0.045 4.045 12 C -0.186 4.186 13 C -0.214 4.214 14 C 0.084 3.916 15 C -0.494 4.494 16 H 0.093 0.907 17 C -0.143 4.143 18 N -0.432 5.432 19 Si 0.734 3.266 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.188 1.188 23 C -0.150 4.150 24 C -0.142 4.142 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.146 0.854 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.568 3.200 -11.824 13.899 hybrid contribution 0.437 -0.128 0.515 0.687 sum -6.131 3.072 -11.310 13.226 Atomic orbital electron populations 1.22763 0.81328 1.02562 0.99801 1.87949 1.19498 1.27563 1.94918 1.22763 0.94800 0.84908 0.94718 0.90765 1.22583 0.97444 1.01454 0.96477 1.22229 0.94955 1.01734 0.96810 1.22949 1.00360 1.00444 0.94378 1.22937 0.93658 0.98623 0.81578 0.89781 1.85840 1.48810 1.71230 1.17700 1.18593 0.90719 1.05856 0.89283 1.20441 0.96313 1.03733 0.98151 1.20599 0.99889 1.06583 0.94351 1.17605 0.92861 0.89956 0.91194 1.19466 0.96812 1.40508 0.92607 0.90651 1.25855 0.96159 0.92811 0.99460 1.69809 1.18507 1.36606 1.18287 0.86299 0.81593 0.78917 0.79771 1.19419 1.20413 1.18774 1.21033 0.95347 0.99454 0.99148 1.19853 1.00234 1.04140 0.89982 0.94378 0.89796 0.93858 0.90625 0.91186 0.91240 0.91309 0.90392 0.90443 0.88578 0.88752 0.91047 0.85442 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.85 101.05 1.10 1.46 16 2 O -0.38 -5.79 10.26 -35.23 -0.36 -6.16 16 3 C 0.09 1.24 3.13 -25.62 -0.08 1.16 16 4 H 0.07 1.06 7.74 -51.93 -0.40 0.66 16 5 C -0.14 -1.59 6.61 -25.61 -0.17 -1.76 16 6 C -0.12 -1.34 6.83 -25.07 -0.17 -1.51 16 7 C -0.14 -2.04 6.34 -24.74 -0.16 -2.20 16 8 C 0.09 1.53 2.41 -25.07 -0.06 1.47 16 9 H 0.08 1.56 6.23 -51.93 -0.32 1.23 16 10 O -0.32 -6.74 9.84 -18.71 -0.18 -6.93 16 11 C 0.00 -0.03 6.68 -38.78 -0.26 -0.29 16 12 C -0.17 -3.89 8.72 -39.83 -0.35 -4.23 16 13 C -0.19 -4.87 9.74 -39.25 -0.38 -5.26 16 14 C 0.09 2.34 5.57 -106.80 -0.59 1.74 16 15 C -0.46 -12.50 9.05 -37.83 -0.34 -12.84 16 16 H 0.08 1.95 7.88 -52.49 -0.41 1.54 16 17 C 0.07 1.86 5.21 -17.34 -0.09 1.77 16 18 N -0.81 -21.22 10.83 55.54 0.60 -20.62 16 19 Si 0.91 19.02 29.58 -169.99 -5.03 13.99 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 22 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 23 C -0.13 -3.47 8.63 -39.25 -0.34 -3.81 16 24 C -0.12 -3.05 9.92 -39.83 -0.40 -3.44 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 27 H 0.04 0.48 8.10 -51.93 -0.42 0.06 16 28 H 0.08 0.80 7.96 -51.93 -0.41 0.39 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.13 7.51 -51.93 -0.39 0.74 16 34 H 0.10 1.97 5.41 -52.49 -0.28 1.68 16 35 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 36 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 37 H 0.13 3.46 6.13 -52.49 -0.32 3.14 16 38 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 LS Contribution 311.74 15.07 4.70 4.70 Total: -1.00 -29.04 311.74 -8.05 -37.09 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.48 Total: 5.66 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: -2.29 Total: -27.73 kcal Atomic # 7 Polarization: -21.22 SS G_CDS: 0.60 Total: -20.62 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.55 Total: -13.08 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.04 -8.05 -37.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310446081.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.657 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds