Wall clock time and date at job start Mon Mar 30 2020 06:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00135 * 2 1 4 4 H 1.09002 * 110.01082 * 29.94329 * 3 2 1 5 5 C 1.53871 * 110.03613 * 268.55198 * 3 2 1 6 6 C 1.54270 * 106.59452 * 240.71621 * 5 3 2 7 7 C 1.54885 * 104.19512 * 336.38675 * 6 5 3 8 8 C 1.54264 * 110.02876 * 151.38058 * 3 2 1 9 9 H 1.08997 * 110.48806 * 24.08904 * 8 3 2 10 10 O 1.42908 * 110.48691 * 261.57576 * 8 3 2 11 11 C 1.35670 * 117.00094 * 156.90997 * 10 8 3 12 12 C 1.39314 * 119.81630 * 5.15622 * 11 10 8 13 13 C 1.36438 * 120.18574 * 179.76642 * 12 11 10 14 14 C 1.40837 * 119.80832 * 0.50378 * 13 12 11 15 15 C 1.41219 * 120.18023 * 179.76740 * 14 13 12 16 16 H 1.07999 * 119.99443 * 26.30685 * 15 14 13 17 17 C 1.39884 * 120.00091 * 206.30952 * 15 14 13 18 18 N 1.30881 * 120.00390 * 13.65470 * 17 15 14 19 19 Si 1.86800 * 119.99936 * 193.66124 * 17 15 14 20 20 H 1.48497 * 109.47265 * 89.99743 * 19 17 15 21 21 H 1.48504 * 109.47184 * 209.99562 * 19 17 15 22 22 H 1.48503 * 109.47016 * 329.99222 * 19 17 15 23 23 C 1.40833 * 119.64417 * 359.75175 * 14 13 12 24 24 C 1.36442 * 119.81043 * 359.97438 * 23 14 13 25 25 H 1.09002 * 109.46942 * 59.99823 * 1 2 3 26 26 H 1.09008 * 109.47063 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47153 * 299.99470 * 1 2 3 28 28 H 1.09003 * 110.03350 * 359.97438 * 5 3 2 29 29 H 1.08994 * 110.03292 * 121.43085 * 5 3 2 30 30 H 1.08997 * 110.48634 * 95.06948 * 6 5 3 31 31 H 1.09001 * 110.48281 * 217.70929 * 6 5 3 32 32 H 1.09002 * 110.75786 * 279.63138 * 7 6 5 33 33 H 1.09000 * 110.91511 * 156.33393 * 7 6 5 34 34 H 1.07998 * 119.90857 * 359.97438 * 12 11 10 35 35 H 1.07997 * 120.09593 * 180.25512 * 13 12 11 36 36 H 0.96994 * 120.00757 * 180.02562 * 18 17 15 37 37 H 1.07999 * 120.09902 * 179.97438 * 23 14 13 38 38 H 1.07997 * 119.90861 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3512 2.0072 0.5112 5 6 2.2581 1.7722 -1.4451 6 6 3.7773 2.0047 -1.5786 7 6 4.2516 2.2599 -0.1264 8 6 3.3874 1.2706 0.6942 9 1 3.8102 0.2668 0.6530 10 8 3.2756 1.7096 2.0496 11 6 4.2388 1.2981 2.9118 12 6 5.3307 0.5750 2.4368 13 6 6.3062 0.1615 3.2965 14 6 6.2015 0.4585 4.6692 15 6 7.2041 0.0301 5.5668 16 1 8.2117 -0.1317 5.2135 17 6 6.8920 -0.1847 6.9133 18 7 5.6412 -0.2521 7.2926 19 14 8.2606 -0.3753 8.1703 20 1 8.6150 0.9570 8.7221 21 1 7.8021 -1.2608 9.2708 22 1 9.4525 -0.9739 7.5174 23 6 5.0917 1.1853 5.1420 24 6 4.1278 1.5963 4.2681 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.9354 1.0028 -2.1466 29 1 1.7201 2.7009 -1.6350 30 1 4.2640 1.1199 -1.9890 31 1 3.9765 2.8752 -2.2036 32 1 4.0486 3.2888 0.1710 33 1 5.3113 2.0297 -0.0171 34 1 5.4071 0.3440 1.3846 35 1 7.1541 -0.3954 2.9261 36 1 5.4247 -0.4007 8.2263 37 1 5.0038 1.4168 6.1932 38 1 3.2763 2.1541 4.6289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310446081.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:45 Heat of formation + Delta-G solvation = -89.660522 kcal Electronic energy + Delta-G solvation = -19475.619767 eV Core-core repulsion = 16475.076983 eV Total energy + Delta-G solvation = -3000.542784 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06106 -39.53220 -38.01487 -36.40066 -35.11188 -31.73155 -30.95762 -29.24237 -29.04003 -27.12585 -26.45687 -23.37939 -22.62971 -21.63564 -21.16963 -19.32053 -19.00270 -17.63934 -17.03426 -16.98116 -16.20786 -15.91821 -15.64617 -15.61570 -15.00652 -14.76116 -14.52566 -14.08873 -13.83078 -13.60406 -13.43440 -13.12318 -12.77949 -12.74855 -12.59661 -12.40355 -12.33415 -12.10064 -11.72191 -11.66022 -11.48879 -11.41462 -11.12804 -10.94484 -10.53403 -9.56589 -8.88698 -8.56333 -6.24526 0.94216 1.02327 1.40161 1.52407 1.53806 2.23662 2.35599 2.74378 2.99233 3.49213 3.67403 3.73005 3.92865 4.19787 4.25282 4.32301 4.34955 4.41453 4.46113 4.53263 4.60573 4.68998 4.79786 4.83072 4.94963 4.95777 5.07024 5.12519 5.15082 5.23253 5.28665 5.34951 5.59375 5.65514 5.89050 6.05589 6.22843 6.26970 6.57356 6.80508 6.95816 7.09190 8.40071 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.037804 B = 0.004202 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.490901 B = 6661.272454 C = 7037.398390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.086 3.914 4 H 0.073 0.927 5 C -0.132 4.132 6 C -0.111 4.111 7 C -0.141 4.141 8 C 0.073 3.927 9 H 0.067 0.933 10 O -0.329 6.329 11 C 0.006 3.994 12 C -0.165 4.165 13 C -0.205 4.205 14 C 0.054 3.946 15 C -0.499 4.499 16 H 0.076 0.924 17 C 0.031 3.969 18 N -0.837 5.837 19 Si 0.985 3.015 20 H -0.262 1.262 21 H -0.270 1.270 22 H -0.259 1.259 23 C -0.148 4.148 24 C -0.136 4.136 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.039 0.961 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.286 0.714 37 H 0.114 0.886 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.567 3.645 -13.687 15.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C 0.028 3.972 4 H 0.091 0.909 5 C -0.170 4.170 6 C -0.149 4.149 7 C -0.179 4.179 8 C 0.017 3.983 9 H 0.085 0.915 10 O -0.245 6.245 11 C -0.037 4.037 12 C -0.184 4.184 13 C -0.225 4.225 14 C 0.052 3.948 15 C -0.529 4.529 16 H 0.094 0.906 17 C -0.182 4.182 18 N -0.465 5.465 19 Si 0.806 3.194 20 H -0.187 1.187 21 H -0.194 1.194 22 H -0.183 1.183 23 C -0.168 4.168 24 C -0.155 4.155 25 H 0.081 0.919 26 H 0.114 0.886 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.141 0.859 35 H 0.123 0.877 36 H 0.097 0.903 37 H 0.132 0.868 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.782 3.544 -13.455 15.478 hybrid contribution 0.363 -0.233 0.893 0.991 sum -6.419 3.311 -12.562 14.490 Atomic orbital electron populations 1.22968 0.79426 1.03793 1.00824 1.87905 1.21660 1.28103 1.95189 1.22833 0.93047 0.84826 0.96499 0.90935 1.22561 0.97661 1.02723 0.94043 1.22236 0.94768 1.03119 0.94767 1.22926 0.99408 0.99471 0.96079 1.23373 0.96535 0.98473 0.79949 0.91514 1.85827 1.47967 1.71226 1.19506 1.18671 0.91053 1.04571 0.89448 1.20685 0.95507 1.02865 0.99318 1.20828 1.00792 1.06816 0.94033 1.17957 0.93561 0.90877 0.92409 1.19728 0.96914 1.42269 0.93988 0.90610 1.26740 0.98690 0.91781 1.00967 1.69874 1.20488 1.36944 1.19181 0.85154 0.78161 0.79168 0.76885 1.18683 1.19420 1.18250 1.20965 0.96300 1.00656 0.98874 1.20029 1.00330 1.04404 0.90706 0.91895 0.88590 0.94248 0.89570 0.88893 0.90823 0.88701 0.90361 0.91169 0.85906 0.87677 0.90311 0.86847 0.87320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.85 113.37 1.23 1.76 16 2 O -0.41 -11.88 10.26 -148.98 -1.53 -13.41 16 3 C 0.09 2.32 3.13 31.32 0.10 2.42 16 4 H 0.07 1.95 7.74 -2.39 -0.02 1.94 16 5 C -0.13 -2.51 6.61 31.32 0.21 -2.30 16 6 C -0.11 -2.12 6.83 31.67 0.22 -1.90 16 7 C -0.14 -3.76 6.34 31.88 0.20 -3.56 16 8 C 0.07 2.44 2.41 31.67 0.08 2.52 16 9 H 0.07 2.44 6.23 -2.39 -0.01 2.43 16 10 O -0.33 -13.79 9.84 -89.87 -0.88 -14.67 16 11 C 0.01 0.30 6.68 22.79 0.15 0.45 16 12 C -0.17 -7.68 8.72 22.11 0.19 -7.48 16 13 C -0.21 -10.45 9.74 22.49 0.22 -10.24 16 14 C 0.05 3.03 5.57 -21.28 -0.12 2.91 16 15 C -0.50 -27.63 9.05 23.40 0.21 -27.42 16 16 H 0.08 4.02 7.88 -2.91 -0.02 4.00 16 17 C 0.03 1.61 5.21 85.23 0.44 2.05 16 18 N -0.84 -45.19 10.83 21.82 0.24 -44.95 16 19 Si 0.99 39.17 29.58 68.60 2.03 41.20 16 20 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 21 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 22 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 23 C -0.15 -8.19 8.63 22.49 0.19 -8.00 16 24 C -0.14 -6.88 9.92 22.11 0.22 -6.66 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.04 0.83 8.10 -2.39 -0.02 0.81 16 28 H 0.09 1.50 7.96 -2.39 -0.02 1.48 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.07 1.95 7.51 -2.39 -0.02 1.93 16 34 H 0.12 4.95 5.41 -2.91 -0.02 4.93 16 35 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 36 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 37 H 0.11 6.47 6.13 -2.91 -0.02 6.45 16 38 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -63.91 311.74 4.44 -59.47 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 1.04 Total: 27.79 kcal Atomic # 6 Polarization: -58.98 SS G_CDS: 3.55 Total: -55.44 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.24 Total: -44.95 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -2.41 Total: -28.08 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -63.91 4.44 -59.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310446081.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.186 kcal (2) G-P(sol) polarization free energy of solvation -63.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds