Wall clock time and date at job start Mon Mar 30 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38660 * 120.31543 * 2 1 4 4 C 1.38548 * 118.49399 * 179.72663 * 3 2 1 5 5 C 1.39407 * 119.05551 * 0.49442 * 4 3 2 6 6 C 1.47998 * 119.73085 * 179.77545 * 5 4 3 7 7 O 1.21574 * 120.00405 * 354.15469 * 6 5 4 8 8 N 1.34776 * 119.99948 * 174.15936 * 6 5 4 9 9 C 1.36779 * 120.00180 * 353.80843 * 8 6 5 10 10 H 1.07996 * 119.99716 * 314.46190 * 9 8 6 11 11 C 1.39108 * 120.00260 * 134.19094 * 9 8 6 12 12 N 1.31322 * 119.99516 * 338.18539 * 11 9 8 13 13 Si 1.86792 * 120.00238 * 158.19127 * 11 9 8 14 14 H 1.48499 * 109.47377 * 89.99570 * 13 11 9 15 15 H 1.48496 * 109.47530 * 209.99803 * 13 11 9 16 16 H 1.48505 * 109.47150 * 329.99798 * 13 11 9 17 17 C 1.46504 * 119.99976 * 173.80923 * 8 6 5 18 18 C 1.52999 * 109.47075 * 298.31740 * 17 8 6 19 19 C 1.53002 * 109.47266 * 58.31936 * 17 8 6 20 20 N 1.32786 * 120.53396 * 359.49488 * 5 4 3 21 21 C 1.31526 * 121.63256 * 0.25556 * 20 5 4 22 22 C 1.50702 * 119.54193 * 179.97438 * 21 20 5 23 23 H 1.09001 * 109.47083 * 270.02192 * 1 2 3 24 24 H 1.08992 * 109.47059 * 30.02579 * 1 2 3 25 25 H 1.09005 * 109.47242 * 150.02294 * 1 2 3 26 26 H 1.07994 * 120.75263 * 359.97438 * 3 2 1 27 27 H 1.08001 * 120.46659 * 180.24042 * 4 3 2 28 28 H 0.97006 * 119.99673 * 180.02562 * 12 11 9 29 29 H 1.09005 * 109.47174 * 178.32369 * 17 8 6 30 30 H 1.09001 * 109.47129 * 65.21201 * 18 17 8 31 31 H 1.09000 * 109.47339 * 185.20592 * 18 17 8 32 32 H 1.08998 * 109.47508 * 305.21102 * 18 17 8 33 33 H 1.08999 * 109.47026 * 51.45797 * 19 17 8 34 34 H 1.09005 * 109.46851 * 171.45452 * 19 17 8 35 35 H 1.09001 * 109.46694 * 291.45451 * 19 17 8 36 36 H 1.09004 * 109.46819 * 90.00540 * 22 21 20 37 37 H 1.08999 * 109.46769 * 209.99674 * 22 21 20 38 38 H 1.08999 * 109.47553 * 330.00257 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1970 0.0000 4 6 3.5917 1.1530 0.0058 5 6 4.2297 -0.0865 0.0009 6 6 5.7083 -0.1510 0.0020 7 8 6.3614 0.8694 -0.1002 8 7 6.3309 -1.3409 0.1160 9 6 5.6028 -2.4733 0.3577 10 1 4.8308 -2.4680 1.1129 11 6 5.8529 -3.6302 -0.3732 12 7 6.4455 -3.5528 -1.5426 13 14 5.3456 -5.2936 0.3085 14 1 3.9640 -5.6099 -0.1347 15 1 6.2765 -6.3377 -0.1900 16 1 5.3930 -5.2559 1.7923 17 6 7.7875 -1.4214 -0.0187 18 6 8.1964 -0.9593 -1.4188 19 6 8.4471 -0.5216 1.0283 20 7 3.5215 -1.2098 0.0009 21 6 2.2063 -1.1961 0.0005 22 6 1.4497 -2.4994 -0.0001 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6845 2.1421 -0.0004 27 1 4.1686 2.0660 0.0099 28 1 6.6196 -4.3594 -2.0524 29 1 8.1100 -2.4516 0.1324 30 1 7.9571 0.0976 -1.5369 31 1 9.2683 -1.1060 -1.5512 32 1 7.6552 -1.5400 -2.1657 33 1 8.0401 -0.7514 2.0130 34 1 9.5232 -0.6951 1.0304 35 1 8.2478 0.5226 0.7873 36 1 1.2668 -2.8137 1.0275 37 1 0.4977 -2.3665 -0.5142 38 1 2.0370 -3.2604 -0.5139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000318998888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:53 Heat of formation + Delta-G solvation = 7.254056 kcal Electronic energy + Delta-G solvation = -20529.164730 eV Core-core repulsion = 17565.117229 eV Total energy + Delta-G solvation = -2964.047501 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.91722 -38.30922 -35.01293 -33.44152 -32.35458 -32.17582 -30.54754 -27.87355 -26.66512 -26.05302 -24.65724 -22.56464 -21.88183 -20.34506 -18.89970 -17.72494 -16.03775 -15.35056 -14.89873 -14.40348 -14.35994 -14.26508 -13.87319 -13.54424 -12.90312 -12.69964 -12.63819 -12.52612 -12.30321 -12.15267 -11.78635 -11.64658 -11.57452 -11.09463 -11.03415 -10.98695 -10.96283 -10.49184 -10.30765 -10.14966 -9.84181 -9.08390 -8.91954 -8.63971 -8.17623 -8.10445 -7.28814 -6.27900 -3.84097 1.43435 1.91534 3.18692 3.27515 3.31961 3.80573 4.19669 4.61876 4.75618 4.92606 5.10265 5.17838 5.28089 5.33802 5.64255 5.68116 5.90423 5.94698 6.00845 6.06629 6.12546 6.18930 6.28028 6.32739 6.43272 6.52271 6.58477 6.73541 6.76466 6.91185 6.91338 7.03244 7.32409 7.38277 7.51546 7.72938 8.06982 8.56672 8.76465 9.21716 9.57885 10.00860 10.76469 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.009634 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.247603 B = 2905.552601 C = 4259.398550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.149 4.149 3 C -0.092 4.092 4 C -0.139 4.139 5 C 0.115 3.885 6 C 0.504 3.496 7 O -0.603 6.603 8 N -0.404 5.404 9 C -0.295 4.295 10 H 0.100 0.900 11 C 0.050 3.950 12 N -0.851 5.851 13 Si 0.907 3.093 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.270 1.270 17 C 0.158 3.842 18 C -0.155 4.155 19 C -0.165 4.165 20 N -0.399 5.399 21 C 0.109 3.891 22 C -0.103 4.103 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.126 0.874 27 H 0.136 0.864 28 H 0.266 0.734 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.895 2.545 2.524 8.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.152 4.152 3 C -0.118 4.118 4 C -0.160 4.160 5 C -0.024 4.024 6 C 0.293 3.707 7 O -0.491 6.491 8 N -0.120 5.120 9 C -0.425 4.425 10 H 0.117 0.883 11 C -0.157 4.157 12 N -0.487 5.487 13 Si 0.733 3.267 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.195 1.195 17 C 0.055 3.945 18 C -0.213 4.213 19 C -0.223 4.223 20 N -0.110 5.110 21 C -0.031 4.031 22 C -0.160 4.160 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.144 0.856 27 H 0.154 0.846 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.968 2.072 2.317 7.630 hybrid contribution -0.739 -0.170 0.133 0.770 sum -7.707 1.902 2.449 8.308 Atomic orbital electron populations 1.20741 0.91175 1.02515 1.01929 1.20772 0.96770 0.94075 1.03577 1.21238 0.93785 0.97518 0.99229 1.22041 0.94412 0.99309 1.00253 1.21475 0.95539 0.88360 0.97053 1.18094 0.85237 0.84721 0.82630 1.90549 1.65412 1.35193 1.57905 1.43531 1.04775 1.05963 1.57681 1.19537 1.17577 0.86884 1.18463 0.88274 1.25393 0.96584 0.99979 0.93781 1.69965 1.40269 1.29234 1.09241 0.86275 0.78519 0.82252 0.79625 1.20201 1.21139 1.19471 1.20776 0.80983 0.98715 0.94066 1.22065 0.99037 1.01860 0.98360 1.22258 0.98540 1.02634 0.98870 1.68610 1.05342 1.29293 1.07717 1.21426 0.90798 0.94367 0.96529 1.20714 0.98745 0.94044 1.02482 0.91504 0.92027 0.91176 0.85564 0.84590 0.92394 0.90345 0.92703 0.94516 0.90225 0.93671 0.93733 0.90621 0.91032 0.91258 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.62 36.01 0.35 -0.86 16 2 C -0.15 -2.38 5.91 -104.35 -0.62 -2.99 16 3 C -0.09 -1.49 9.85 -39.31 -0.39 -1.88 16 4 C -0.14 -2.73 9.63 -39.03 -0.38 -3.11 16 5 C 0.11 2.67 6.63 -83.02 -0.55 2.12 16 6 C 0.50 12.93 7.03 -12.26 -0.09 12.84 16 7 O -0.60 -15.84 12.76 5.30 0.07 -15.77 16 8 N -0.40 -10.40 2.39 -108.74 -0.26 -10.66 16 9 C -0.30 -7.66 7.00 -15.02 -0.11 -7.77 16 10 H 0.10 2.61 6.65 -52.49 -0.35 2.26 16 11 C 0.05 1.26 4.72 -17.45 -0.08 1.18 16 12 N -0.85 -22.51 11.45 55.50 0.64 -21.88 16 13 Si 0.91 19.81 29.61 -169.99 -5.03 14.78 16 14 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 15 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 17 C 0.16 3.77 2.38 -67.93 -0.16 3.60 16 18 C -0.16 -3.60 8.98 37.16 0.33 -3.27 16 19 C -0.17 -3.49 8.91 37.16 0.33 -3.16 16 20 N -0.40 -9.07 6.57 -6.07 -0.04 -9.11 16 21 C 0.11 2.03 6.78 -82.61 -0.56 1.47 16 22 C -0.10 -1.58 9.77 36.01 0.35 -1.23 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 25 H 0.07 0.73 5.95 -51.93 -0.31 0.42 16 26 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 27 H 0.14 2.57 7.65 -52.49 -0.40 2.17 16 28 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.08 1.93 7.19 -51.93 -0.37 1.56 16 30 H 0.05 1.31 6.64 -51.93 -0.34 0.97 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 2.03 6.85 -51.93 -0.36 1.67 16 33 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.70 6.17 -51.93 -0.32 1.38 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 307.62 15.07 4.64 4.64 Total: -1.00 -29.38 307.62 -6.83 -36.21 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.28 Total: 4.84 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -1.56 Total: -3.04 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.34 Total: -41.65 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.07 Total: -15.77 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.38 -6.83 -36.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000318998888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.464 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds