Wall clock time and date at job start Mon Mar 30 2020 06:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38660 * 120.31543 * 2 1 4 4 C 1.38548 * 118.49399 * 179.72663 * 3 2 1 5 5 C 1.39407 * 119.05551 * 0.49442 * 4 3 2 6 6 C 1.47998 * 119.73085 * 179.77545 * 5 4 3 7 7 O 1.21574 * 120.00405 * 354.15469 * 6 5 4 8 8 N 1.34776 * 119.99948 * 174.15936 * 6 5 4 9 9 C 1.36779 * 120.00180 * 353.80843 * 8 6 5 10 10 H 1.07996 * 119.99716 * 314.46190 * 9 8 6 11 11 C 1.39108 * 120.00260 * 134.19094 * 9 8 6 12 12 N 1.31322 * 119.99516 * 338.18539 * 11 9 8 13 13 Si 1.86792 * 120.00238 * 158.19127 * 11 9 8 14 14 H 1.48499 * 109.47377 * 89.99570 * 13 11 9 15 15 H 1.48496 * 109.47530 * 209.99803 * 13 11 9 16 16 H 1.48505 * 109.47150 * 329.99798 * 13 11 9 17 17 C 1.46504 * 119.99976 * 173.80923 * 8 6 5 18 18 C 1.52999 * 109.47075 * 298.31740 * 17 8 6 19 19 C 1.53002 * 109.47266 * 58.31936 * 17 8 6 20 20 N 1.32786 * 120.53396 * 359.49488 * 5 4 3 21 21 C 1.31526 * 121.63256 * 0.25556 * 20 5 4 22 22 C 1.50702 * 119.54193 * 179.97438 * 21 20 5 23 23 H 1.09001 * 109.47083 * 270.02192 * 1 2 3 24 24 H 1.08992 * 109.47059 * 30.02579 * 1 2 3 25 25 H 1.09005 * 109.47242 * 150.02294 * 1 2 3 26 26 H 1.07994 * 120.75263 * 359.97438 * 3 2 1 27 27 H 1.08001 * 120.46659 * 180.24042 * 4 3 2 28 28 H 0.97006 * 119.99673 * 180.02562 * 12 11 9 29 29 H 1.09005 * 109.47174 * 178.32369 * 17 8 6 30 30 H 1.09001 * 109.47129 * 65.21201 * 18 17 8 31 31 H 1.09000 * 109.47339 * 185.20592 * 18 17 8 32 32 H 1.08998 * 109.47508 * 305.21102 * 18 17 8 33 33 H 1.08999 * 109.47026 * 51.45797 * 19 17 8 34 34 H 1.09005 * 109.46851 * 171.45452 * 19 17 8 35 35 H 1.09001 * 109.46694 * 291.45451 * 19 17 8 36 36 H 1.09004 * 109.46819 * 90.00540 * 22 21 20 37 37 H 1.08999 * 109.46769 * 209.99674 * 22 21 20 38 38 H 1.08999 * 109.47553 * 330.00257 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1970 0.0000 4 6 3.5917 1.1530 0.0058 5 6 4.2297 -0.0865 0.0009 6 6 5.7083 -0.1510 0.0020 7 8 6.3614 0.8694 -0.1002 8 7 6.3309 -1.3409 0.1160 9 6 5.6028 -2.4733 0.3577 10 1 4.8308 -2.4680 1.1129 11 6 5.8529 -3.6302 -0.3732 12 7 6.4455 -3.5528 -1.5426 13 14 5.3456 -5.2936 0.3085 14 1 3.9640 -5.6099 -0.1347 15 1 6.2765 -6.3377 -0.1900 16 1 5.3930 -5.2559 1.7923 17 6 7.7875 -1.4214 -0.0187 18 6 8.1964 -0.9593 -1.4188 19 6 8.4471 -0.5216 1.0283 20 7 3.5215 -1.2098 0.0009 21 6 2.2063 -1.1961 0.0005 22 6 1.4497 -2.4994 -0.0001 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6845 2.1421 -0.0004 27 1 4.1686 2.0660 0.0099 28 1 6.6196 -4.3594 -2.0524 29 1 8.1100 -2.4516 0.1324 30 1 7.9571 0.0976 -1.5369 31 1 9.2683 -1.1060 -1.5512 32 1 7.6552 -1.5400 -2.1657 33 1 8.0401 -0.7514 2.0130 34 1 9.5232 -0.6951 1.0304 35 1 8.2478 0.5226 0.7873 36 1 1.2668 -2.8137 1.0275 37 1 0.4977 -2.3665 -0.5142 38 1 2.0370 -3.2604 -0.5139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000318998888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:52 Heat of formation + Delta-G solvation = -9.339808 kcal Electronic energy + Delta-G solvation = -20529.884294 eV Core-core repulsion = 17565.117229 eV Total energy + Delta-G solvation = -2964.767065 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.49044 -40.07595 -36.92652 -34.89017 -34.02253 -33.76062 -32.38673 -29.10610 -28.09876 -27.86154 -26.56503 -24.09534 -23.36578 -21.95600 -20.77677 -19.49951 -17.63368 -17.12894 -16.44860 -16.18249 -15.96153 -15.87797 -15.47142 -15.14779 -14.52491 -14.34221 -14.02651 -13.99112 -13.62124 -13.54985 -13.45400 -13.08026 -12.89387 -12.83353 -12.79822 -12.69600 -12.40648 -12.17309 -12.09773 -11.97207 -11.70866 -10.78046 -10.51086 -10.45270 -9.88651 -9.58161 -9.18832 -8.19386 -5.82734 -0.06705 0.50785 1.44386 1.48014 1.58787 2.09525 2.38972 2.89924 3.02371 3.23734 3.59843 3.91324 4.05288 4.09350 4.18321 4.30521 4.50050 4.53841 4.66564 4.74165 4.76650 4.80778 4.82949 4.88981 4.96547 4.99026 5.08234 5.17687 5.20533 5.31150 5.34045 5.44016 5.52177 5.58109 5.76197 5.94847 6.15670 6.61492 7.16758 7.33033 7.67100 8.08024 8.85462 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.009634 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.247603 B = 2905.552601 C = 4259.398550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.127 4.127 3 C -0.085 4.085 4 C -0.144 4.144 5 C 0.068 3.932 6 C 0.492 3.508 7 O -0.622 6.622 8 N -0.419 5.419 9 C -0.304 4.304 10 H 0.090 0.910 11 C 0.012 3.988 12 N -0.884 5.884 13 Si 0.967 3.033 14 H -0.270 1.270 15 H -0.284 1.284 16 H -0.267 1.267 17 C 0.152 3.848 18 C -0.141 4.141 19 C -0.151 4.151 20 N -0.435 5.435 21 C 0.085 3.915 22 C -0.099 4.099 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.172 0.828 27 H 0.135 0.865 28 H 0.266 0.734 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.568 2.762 3.151 11.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.130 4.130 3 C -0.110 4.110 4 C -0.165 4.165 5 C -0.070 4.070 6 C 0.282 3.718 7 O -0.511 6.511 8 N -0.135 5.135 9 C -0.433 4.433 10 H 0.107 0.893 11 C -0.191 4.191 12 N -0.521 5.521 13 Si 0.791 3.209 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.191 1.191 17 C 0.048 3.952 18 C -0.199 4.199 19 C -0.209 4.209 20 N -0.146 5.146 21 C -0.056 4.056 22 C -0.156 4.156 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.189 0.811 27 H 0.153 0.847 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.645 2.291 2.952 10.344 hybrid contribution -0.072 -0.113 -0.067 0.149 sum -9.716 2.178 2.885 10.367 Atomic orbital electron populations 1.20885 0.87004 1.04456 1.03813 1.21332 0.99538 0.92685 0.99430 1.21724 0.92216 0.99731 0.97367 1.22153 0.96307 0.97851 1.00192 1.21289 0.94494 0.90148 1.01052 1.18662 0.86866 0.84471 0.81816 1.90497 1.66417 1.35613 1.58574 1.43723 1.05462 1.06064 1.58221 1.19518 1.17917 0.87321 1.18544 0.89289 1.26072 0.96630 1.02698 0.93725 1.70075 1.41928 1.29812 1.10267 0.85349 0.78305 0.78227 0.78980 1.19551 1.20915 1.19096 1.20869 0.80738 0.98546 0.95023 1.21895 1.00409 1.00134 0.97419 1.22115 1.00284 1.00870 0.97654 1.68388 1.07661 1.29766 1.08797 1.22059 0.89847 0.97007 0.96702 1.20800 0.99424 0.91728 1.03611 0.89337 0.89658 0.89757 0.81070 0.84738 0.92487 0.91557 0.94125 0.91651 0.92976 0.93983 0.90498 0.92154 0.89531 0.87541 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 9.62 71.24 0.69 -1.11 16 2 C -0.13 -3.62 5.91 -19.69 -0.12 -3.74 16 3 C -0.09 -2.51 9.85 22.44 0.22 -2.29 16 4 C -0.14 -5.62 9.63 22.63 0.22 -5.40 16 5 C 0.07 3.25 6.63 41.87 0.28 3.53 16 6 C 0.49 26.38 7.03 86.83 0.61 26.99 16 7 O -0.62 -34.09 12.76 -3.95 -0.05 -34.14 16 8 N -0.42 -22.49 2.39 -616.22 -1.47 -23.97 16 9 C -0.30 -16.36 7.00 84.13 0.59 -15.77 16 10 H 0.09 4.88 6.65 -2.91 -0.02 4.86 16 11 C 0.01 0.65 4.72 84.98 0.40 1.05 16 12 N -0.88 -48.35 11.45 21.69 0.25 -48.10 16 13 Si 0.97 41.35 29.61 68.60 2.03 43.38 16 14 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 15 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 17 C 0.15 7.45 2.38 44.99 0.11 7.55 16 18 C -0.14 -6.72 8.98 71.98 0.65 -6.08 16 19 C -0.15 -6.48 8.91 71.98 0.64 -5.84 16 20 N -0.43 -20.14 6.57 -173.12 -1.14 -21.28 16 21 C 0.08 3.04 6.78 42.68 0.29 3.33 16 22 C -0.10 -2.82 9.77 71.24 0.70 -2.13 16 23 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 25 H 0.08 1.26 5.95 -2.38 -0.01 1.24 16 26 H 0.17 3.46 8.06 -2.91 -0.02 3.44 16 27 H 0.13 5.15 7.65 -2.91 -0.02 5.13 16 28 H 0.27 13.79 8.31 -92.70 -0.77 13.02 16 29 H 0.07 3.37 7.19 -2.38 -0.02 3.35 16 30 H 0.04 2.01 6.64 -2.39 -0.02 1.99 16 31 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.05 2.76 6.85 -2.39 -0.02 2.74 16 33 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 35 H 0.06 2.76 6.17 -2.39 -0.01 2.75 16 36 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 37 H 0.11 2.18 5.93 -2.39 -0.01 2.16 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -67.94 307.62 5.94 -62.00 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 1.06 Total: 22.00 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 5.27 Total: 0.11 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -2.36 Total: -93.35 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.05 Total: -34.14 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -67.94 5.94 -62.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000318998888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.657 kcal (2) G-P(sol) polarization free energy of solvation -67.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds