Wall clock time and date at job start Mon Mar 30 2020 07:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47516 * 2 1 4 4 C 1.46505 * 120.00058 * 91.55612 * 3 2 1 5 5 C 1.50702 * 109.47052 * 84.39059 * 4 3 2 6 6 H 1.08002 * 119.99588 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00153 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00370 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99800 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46866 * 90.00367 * 9 7 5 11 11 H 1.48497 * 109.47202 * 210.00200 * 9 7 5 12 12 H 1.48494 * 109.47311 * 330.00588 * 9 7 5 13 13 C 1.34771 * 120.00137 * 271.55704 * 3 2 1 14 14 O 1.21627 * 120.00321 * 5.55968 * 13 3 2 15 15 C 1.47264 * 120.00042 * 185.55483 * 13 3 2 16 16 C 1.46684 * 126.94332 * 41.16490 * 15 13 3 17 17 C 1.34488 * 106.33622 * 179.97438 * 16 15 13 18 18 N 1.36450 * 108.85571 * 0.02562 * 17 16 15 19 19 H 0.96998 * 124.85183 * 179.97438 * 18 17 16 20 20 C 1.34662 * 110.29677 * 359.74800 * 18 17 16 21 21 C 1.50698 * 125.80339 * 180.29767 * 20 18 17 22 22 C 1.53006 * 117.49907 * 8.87788 * 21 20 18 23 23 C 1.53001 * 117.49625 * 300.21886 * 21 20 18 24 24 H 1.09005 * 109.47238 * 59.99494 * 1 2 3 25 25 H 1.08994 * 109.47481 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46919 * 299.99991 * 1 2 3 27 27 H 1.08998 * 109.46919 * 240.00009 * 2 1 3 28 28 H 1.09005 * 109.47238 * 120.00506 * 2 1 3 29 29 H 1.08995 * 109.47148 * 204.39297 * 4 3 2 30 30 H 1.08998 * 109.46789 * 324.39452 * 4 3 2 31 31 H 0.96998 * 119.99966 * 180.02562 * 8 7 5 32 32 H 1.08001 * 126.83138 * 359.97438 * 16 15 13 33 33 H 1.07999 * 125.57384 * 179.97438 * 17 16 15 34 34 H 1.09000 * 115.55236 * 154.54882 * 21 20 18 35 35 H 1.09005 * 117.49529 * 0.02562 * 22 21 20 36 36 H 1.08994 * 117.49595 * 145.02370 * 22 21 20 37 37 H 1.09002 * 117.50103 * 214.97537 * 23 21 20 38 38 H 1.08996 * 117.50323 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2951 2.0603 1.2683 5 6 3.6843 1.7079 1.7342 6 1 4.2993 1.0440 1.1447 7 6 4.1697 2.2320 2.9134 8 7 5.3822 1.9249 3.3197 9 14 3.1055 3.3796 3.9333 10 1 2.3097 2.5852 4.9033 11 1 3.9721 4.3352 4.6689 12 1 2.1888 4.1306 3.0385 13 6 2.2132 2.0271 -1.1667 14 8 1.8888 1.5014 -2.2144 15 6 2.8187 3.3694 -1.1730 16 6 3.9447 3.8325 -0.3550 17 6 4.1544 5.1173 -0.6926 18 7 3.2488 5.4756 -1.6484 19 1 3.1923 6.3534 -2.0571 20 6 2.4480 4.4348 -1.9466 21 6 1.3318 4.4431 -2.9590 22 6 1.2097 5.6693 -3.8659 23 6 0.1919 5.4411 -2.7455 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.2220 3.1385 1.1266 30 1 1.5693 1.7421 2.0166 31 1 5.7235 2.2934 4.1496 32 1 4.4958 3.2563 0.3735 33 1 4.9147 5.7607 -0.2749 34 1 1.0780 3.4733 -3.3870 35 1 1.9371 6.4698 -3.7306 36 1 0.8753 5.5062 -4.8904 37 1 -0.8117 5.1281 -3.0335 38 1 0.2495 6.0920 -1.8731 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339813975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:32 Heat of formation + Delta-G solvation = 35.424866 kcal Electronic energy + Delta-G solvation = -20266.005434 eV Core-core repulsion = 17303.179511 eV Total energy + Delta-G solvation = -2962.825923 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.83705 -38.49598 -36.71795 -35.06449 -32.69506 -31.19944 -29.65058 -28.65812 -27.47321 -23.77169 -22.57158 -22.45749 -22.15632 -20.60174 -19.75363 -17.71262 -17.24206 -16.91614 -15.63241 -15.37134 -15.10739 -14.45056 -14.08683 -13.82995 -13.42251 -13.18680 -12.99271 -12.63182 -12.38086 -11.91819 -11.83073 -11.70009 -11.60972 -11.56324 -11.24227 -10.87025 -10.67078 -10.60979 -10.39229 -10.30598 -10.09343 -9.54316 -9.02557 -8.65178 -8.05733 -7.65003 -7.49004 -6.15817 -4.13861 2.33399 3.17724 3.22551 3.30912 3.34551 3.54350 3.87486 4.06301 4.25780 4.33419 4.64435 4.85884 5.02118 5.15543 5.35565 5.51660 5.55981 5.64788 5.78970 5.85802 5.91195 5.95492 5.98975 6.16091 6.24796 6.32990 6.46937 6.64758 6.66881 6.69972 6.90510 6.95234 7.45898 7.53653 7.59383 7.68737 7.94384 8.28195 8.56992 8.90518 9.16958 9.45051 10.96157 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.016992 B = 0.008267 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.465469 B = 3386.303899 C = 4313.782837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 N -0.586 5.586 4 C 0.208 3.792 5 C -0.529 4.529 6 H 0.080 0.920 7 C 0.077 3.923 8 N -0.892 5.892 9 Si 0.867 3.133 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.262 1.262 13 C 0.594 3.406 14 O -0.578 6.578 15 C -0.205 4.205 16 C -0.133 4.133 17 C -0.045 4.045 18 N -0.559 5.559 19 H 0.404 0.596 20 C 0.099 3.901 21 C -0.081 4.081 22 C -0.182 4.182 23 C -0.173 4.173 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.022 0.978 31 H 0.265 0.735 32 H 0.181 0.819 33 H 0.163 0.837 34 H 0.137 0.863 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.633 7.548 -8.198 13.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.315 5.315 4 C 0.086 3.914 5 C -0.567 4.567 6 H 0.098 0.902 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.693 3.307 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.187 1.187 13 C 0.384 3.616 14 O -0.460 6.460 15 C -0.216 4.216 16 C -0.156 4.156 17 C -0.171 4.171 18 N -0.155 5.155 19 H 0.240 0.760 20 C -0.017 4.017 21 C -0.100 4.100 22 C -0.219 4.219 23 C -0.211 4.211 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.198 0.802 33 H 0.181 0.819 34 H 0.154 0.846 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.636 7.414 -8.567 13.663 hybrid contribution -0.317 1.104 0.766 1.381 sum -7.953 8.519 -7.801 14.024 Atomic orbital electron populations 1.22114 0.97109 1.01129 1.01802 1.21224 0.93181 0.83555 1.02626 1.47756 1.63448 1.13230 1.07071 1.19849 0.96809 0.93834 0.80894 1.21372 0.98348 1.29948 1.07064 0.90236 1.24830 0.94780 0.96016 0.96965 1.69901 1.16106 1.44321 1.22686 0.86978 0.81035 0.81599 0.81038 1.20139 1.21045 1.18678 1.17403 0.76862 0.84388 0.82991 1.90634 1.54416 1.68953 1.32030 1.20106 1.03431 0.94081 1.03976 1.23174 0.98057 0.94055 1.00349 1.21758 0.99041 0.98240 0.98032 1.41369 1.27959 1.11915 1.34237 0.76027 1.19031 0.95376 0.88106 0.99158 1.20718 0.94841 0.96644 0.97795 1.22965 1.02764 0.99771 0.96429 1.23048 0.95052 1.02784 1.00197 0.92673 0.92473 0.92933 0.91151 0.90247 0.93812 0.96018 0.92486 0.80158 0.81924 0.84572 0.89462 0.88123 0.88195 0.88888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.23 37.16 0.38 -2.27 16 2 C 0.12 2.25 6.09 -4.04 -0.02 2.23 16 3 N -0.59 -12.86 2.46 -176.39 -0.43 -13.29 16 4 C 0.21 4.81 3.74 -5.19 -0.02 4.79 16 5 C -0.53 -13.82 7.19 -34.44 -0.25 -14.07 16 6 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 7 C 0.08 2.06 5.45 -17.82 -0.10 1.96 16 8 N -0.89 -25.47 13.96 55.43 0.77 -24.70 16 9 Si 0.87 20.05 27.47 -169.99 -4.67 15.38 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 13 C 0.59 13.35 7.40 -12.59 -0.09 13.26 16 14 O -0.58 -13.59 15.53 5.25 0.08 -13.51 16 15 C -0.21 -4.29 5.12 -103.35 -0.53 -4.82 16 16 C -0.13 -2.75 8.95 -37.50 -0.34 -3.09 16 17 C -0.04 -0.75 11.89 -16.82 -0.20 -0.95 16 18 N -0.56 -8.21 5.80 -9.10 -0.05 -8.26 16 19 H 0.40 4.39 7.84 -40.82 -0.32 4.07 16 20 C 0.10 1.73 6.69 -81.88 -0.55 1.18 16 21 C -0.08 -1.20 5.93 -91.77 -0.54 -1.74 16 22 C -0.18 -1.97 10.13 -26.69 -0.27 -2.24 16 23 C -0.17 -2.05 10.24 -26.69 -0.27 -2.32 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.36 7.55 -51.93 -0.39 0.97 16 28 H 0.08 1.50 8.06 -51.93 -0.42 1.08 16 29 H 0.04 1.04 5.02 -51.93 -0.26 0.78 16 30 H 0.02 0.49 7.54 -51.93 -0.39 0.10 16 31 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.18 4.27 5.36 -52.49 -0.28 3.99 16 33 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 34 H 0.14 2.26 7.04 -51.93 -0.37 1.90 16 35 H 0.09 0.82 7.09 -51.93 -0.37 0.45 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 313.79 15.07 4.73 4.73 Total: -1.00 -30.69 313.79 -7.72 -38.41 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -5.35 Total: 9.33 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -2.80 Total: -8.09 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.29 Total: -46.25 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.08 Total: -13.51 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.67 Total: 15.38 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.69 -7.72 -38.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339813975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.831 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds