Wall clock time and date at job start Mon Mar 30 2020 07:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47516 * 2 1 4 4 C 1.46505 * 120.00058 * 91.55612 * 3 2 1 5 5 C 1.50702 * 109.47052 * 84.39059 * 4 3 2 6 6 H 1.08002 * 119.99588 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00153 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00370 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99800 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46866 * 90.00367 * 9 7 5 11 11 H 1.48497 * 109.47202 * 210.00200 * 9 7 5 12 12 H 1.48494 * 109.47311 * 330.00588 * 9 7 5 13 13 C 1.34771 * 120.00137 * 271.55704 * 3 2 1 14 14 O 1.21627 * 120.00321 * 5.55968 * 13 3 2 15 15 C 1.47264 * 120.00042 * 185.55483 * 13 3 2 16 16 C 1.46684 * 126.94332 * 41.16490 * 15 13 3 17 17 C 1.34488 * 106.33622 * 179.97438 * 16 15 13 18 18 N 1.36450 * 108.85571 * 0.02562 * 17 16 15 19 19 H 0.96998 * 124.85183 * 179.97438 * 18 17 16 20 20 C 1.34662 * 110.29677 * 359.74800 * 18 17 16 21 21 C 1.50698 * 125.80339 * 180.29767 * 20 18 17 22 22 C 1.53006 * 117.49907 * 8.87788 * 21 20 18 23 23 C 1.53001 * 117.49625 * 300.21886 * 21 20 18 24 24 H 1.09005 * 109.47238 * 59.99494 * 1 2 3 25 25 H 1.08994 * 109.47481 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46919 * 299.99991 * 1 2 3 27 27 H 1.08998 * 109.46919 * 240.00009 * 2 1 3 28 28 H 1.09005 * 109.47238 * 120.00506 * 2 1 3 29 29 H 1.08995 * 109.47148 * 204.39297 * 4 3 2 30 30 H 1.08998 * 109.46789 * 324.39452 * 4 3 2 31 31 H 0.96998 * 119.99966 * 180.02562 * 8 7 5 32 32 H 1.08001 * 126.83138 * 359.97438 * 16 15 13 33 33 H 1.07999 * 125.57384 * 179.97438 * 17 16 15 34 34 H 1.09000 * 115.55236 * 154.54882 * 21 20 18 35 35 H 1.09005 * 117.49529 * 0.02562 * 22 21 20 36 36 H 1.08994 * 117.49595 * 145.02370 * 22 21 20 37 37 H 1.09002 * 117.50103 * 214.97537 * 23 21 20 38 38 H 1.08996 * 117.50323 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2951 2.0603 1.2683 5 6 3.6843 1.7079 1.7342 6 1 4.2993 1.0440 1.1447 7 6 4.1697 2.2320 2.9134 8 7 5.3822 1.9249 3.3197 9 14 3.1055 3.3796 3.9333 10 1 2.3097 2.5852 4.9033 11 1 3.9721 4.3352 4.6689 12 1 2.1888 4.1306 3.0385 13 6 2.2132 2.0271 -1.1667 14 8 1.8888 1.5014 -2.2144 15 6 2.8187 3.3694 -1.1730 16 6 3.9447 3.8325 -0.3550 17 6 4.1544 5.1173 -0.6926 18 7 3.2488 5.4756 -1.6484 19 1 3.1923 6.3534 -2.0571 20 6 2.4480 4.4348 -1.9466 21 6 1.3318 4.4431 -2.9590 22 6 1.2097 5.6693 -3.8659 23 6 0.1919 5.4411 -2.7455 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.2220 3.1385 1.1266 30 1 1.5693 1.7421 2.0166 31 1 5.7235 2.2934 4.1496 32 1 4.4958 3.2563 0.3735 33 1 4.9147 5.7607 -0.2749 34 1 1.0780 3.4733 -3.3870 35 1 1.9371 6.4698 -3.7306 36 1 0.8753 5.5062 -4.8904 37 1 -0.8117 5.1281 -3.0335 38 1 0.2495 6.0920 -1.8731 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339813975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:31 Heat of formation + Delta-G solvation = 16.602119 kcal Electronic energy + Delta-G solvation = -20266.821650 eV Core-core repulsion = 17303.179511 eV Total energy + Delta-G solvation = -2963.642139 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.21694 -40.16823 -37.76151 -36.82315 -34.66663 -32.78062 -31.15465 -30.06510 -29.30673 -25.22727 -24.47929 -23.42686 -23.32524 -22.10993 -21.17609 -19.24592 -18.97315 -18.58953 -17.26375 -16.94020 -16.31341 -16.17533 -15.59801 -15.13706 -14.90182 -14.68612 -14.65285 -14.32336 -14.06173 -13.40910 -13.31011 -13.22331 -13.10766 -12.67954 -12.59032 -12.46454 -12.42097 -12.03225 -11.78814 -11.66224 -11.62840 -11.35431 -10.77709 -10.67980 -9.55653 -9.34505 -8.90462 -8.24061 -6.26686 0.92289 1.39728 1.42070 1.52601 1.67398 2.22606 2.38109 2.43856 2.57437 3.00189 3.09646 3.58680 3.85350 3.99570 4.09433 4.29266 4.35975 4.40878 4.46740 4.55645 4.69871 4.75919 4.82695 4.92259 4.94149 4.95298 5.01756 5.06826 5.16830 5.29609 5.32277 5.42121 5.53483 5.84969 6.00950 6.15271 6.26837 6.69670 6.75555 6.80719 7.32354 7.47942 8.91786 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.016992 B = 0.008267 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.465469 B = 3386.303899 C = 4313.782837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.110 3.890 3 N -0.594 5.594 4 C 0.222 3.778 5 C -0.519 4.519 6 H 0.030 0.970 7 C 0.029 3.971 8 N -0.939 5.939 9 Si 0.933 3.067 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.248 1.248 13 C 0.586 3.414 14 O -0.599 6.599 15 C -0.256 4.256 16 C -0.176 4.176 17 C -0.019 4.019 18 N -0.535 5.535 19 H 0.429 0.571 20 C 0.121 3.879 21 C -0.121 4.121 22 C -0.151 4.151 23 C -0.160 4.160 24 H 0.044 0.956 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.032 0.968 31 H 0.268 0.732 32 H 0.142 0.858 33 H 0.198 0.802 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.600 10.515 -8.722 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 N -0.323 5.323 4 C 0.100 3.900 5 C -0.558 4.558 6 H 0.048 0.952 7 C -0.170 4.170 8 N -0.579 5.579 9 Si 0.757 3.243 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.171 1.171 13 C 0.377 3.623 14 O -0.483 6.483 15 C -0.266 4.266 16 C -0.200 4.200 17 C -0.146 4.146 18 N -0.132 5.132 19 H 0.269 0.731 20 C 0.002 3.998 21 C -0.141 4.141 22 C -0.188 4.188 23 C -0.198 4.198 24 H 0.063 0.937 25 H 0.106 0.894 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.160 0.840 33 H 0.215 0.785 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.617 10.394 -9.110 16.839 hybrid contribution 0.362 0.142 0.808 0.896 sum -9.256 10.537 -8.303 16.298 Atomic orbital electron populations 1.21995 0.94247 1.03060 1.01464 1.21400 0.95529 0.82356 1.02023 1.47867 1.63611 1.14114 1.06679 1.19598 0.94915 0.93944 0.81529 1.21319 0.99279 1.28710 1.06492 0.95168 1.25574 0.95867 0.97530 0.98063 1.70043 1.18205 1.46152 1.23506 0.85921 0.79420 0.79581 0.79405 1.19271 1.20640 1.17126 1.17798 0.76541 0.85249 0.82711 1.90592 1.55564 1.69706 1.32470 1.20165 1.05091 0.94595 1.06725 1.22794 0.99439 0.95997 1.01754 1.22057 0.98746 0.96906 0.96887 1.41278 1.26368 1.12446 1.33154 0.73139 1.19274 0.95185 0.87491 0.97817 1.20622 0.96219 0.97426 0.99799 1.23145 1.01891 0.97020 0.96762 1.23148 0.95014 1.00662 1.00935 0.93663 0.89425 0.92432 0.92091 0.90516 0.93747 0.94959 0.92334 0.84016 0.78470 0.87167 0.87325 0.86358 0.86964 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 10.23 71.98 0.74 -4.01 16 2 C 0.11 4.33 6.09 86.38 0.53 4.86 16 3 N -0.59 -26.99 2.46 -830.23 -2.04 -29.04 16 4 C 0.22 10.49 3.74 85.63 0.32 10.81 16 5 C -0.52 -28.43 7.19 25.60 0.18 -28.24 16 6 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 7 C 0.03 1.56 5.45 84.65 0.46 2.02 16 8 N -0.94 -55.56 13.96 21.45 0.30 -55.26 16 9 Si 0.93 41.25 27.47 68.60 1.88 43.13 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 12 H -0.25 -10.29 6.54 99.48 0.65 -9.64 16 13 C 0.59 27.38 7.40 86.62 0.64 28.02 16 14 O -0.60 -29.34 15.53 -4.12 -0.06 -29.40 16 15 C -0.26 -10.88 5.12 -19.04 -0.10 -10.98 16 16 C -0.18 -7.45 8.95 23.62 0.21 -7.24 16 17 C -0.02 -0.60 11.89 83.12 0.99 0.39 16 18 N -0.53 -14.12 5.80 -182.72 -1.06 -15.18 16 19 H 0.43 7.32 7.84 -92.71 -0.73 6.59 16 20 C 0.12 4.03 6.69 41.78 0.28 4.31 16 21 C -0.12 -3.38 5.93 -11.54 -0.07 -3.45 16 22 C -0.15 -2.65 10.13 30.62 0.31 -2.34 16 23 C -0.16 -3.24 10.24 30.62 0.31 -2.92 16 24 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.06 2.48 7.55 -2.39 -0.02 2.46 16 28 H 0.08 3.01 8.06 -2.38 -0.02 2.99 16 29 H 0.04 2.11 5.02 -2.39 -0.01 2.10 16 30 H 0.03 1.45 7.54 -2.39 -0.02 1.44 16 31 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.14 7.14 5.36 -2.91 -0.02 7.12 16 33 H 0.20 4.72 8.06 -2.91 -0.02 4.70 16 34 H 0.11 3.68 7.04 -2.39 -0.02 3.66 16 35 H 0.11 1.45 7.09 -2.38 -0.02 1.44 16 36 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -71.09 313.79 4.11 -66.98 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.29 Total: 27.55 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 4.81 Total: -8.78 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -2.80 Total: -99.48 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.06 Total: -29.40 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.88 Total: 43.13 kcal Total: -71.09 4.11 -66.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339813975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.579 kcal (2) G-P(sol) polarization free energy of solvation -71.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds