Wall clock time and date at job start Mon Mar 30 2020 06:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21631 * 120.00520 * 359.97438 * 13 12 2 15 15 C 1.47267 * 120.00276 * 179.97438 * 13 12 2 16 16 C 1.46691 * 126.93740 * 359.68116 * 15 13 12 17 17 C 1.34486 * 106.33125 * 179.82758 * 16 15 13 18 18 N 1.36452 * 108.85482 * 0.44209 * 17 16 15 19 19 H 0.96997 * 124.84686 * 179.68372 * 18 17 16 20 20 C 1.34661 * 110.29724 * 359.70629 * 18 17 16 21 21 C 1.50696 * 125.79810 * 180.02562 * 20 18 17 22 22 C 1.53781 * 113.61589 * 37.47387 * 21 20 18 23 23 C 1.53784 * 87.08056 * 220.01651 * 22 21 20 24 24 C 1.53776 * 113.61851 * 299.97098 * 21 20 18 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 30 30 H 1.08004 * 126.83580 * 0.02562 * 16 15 13 31 31 H 1.08001 * 125.57125 * 180.14142 * 17 16 15 32 32 H 1.09002 * 112.84757 * 168.77529 * 21 20 18 33 33 H 1.09000 * 113.61499 * 334.56221 * 22 21 20 34 34 H 1.09002 * 113.61501 * 105.47024 * 22 21 20 35 35 H 1.09005 * 113.61117 * 270.88520 * 23 22 21 36 36 H 1.08991 * 113.61331 * 139.98249 * 23 22 21 37 37 H 1.08990 * 113.61685 * 254.53257 * 24 21 20 38 38 H 1.09007 * 113.61280 * 25.35197 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8582 1.1619 2.4117 15 6 2.6375 -0.7127 3.5596 16 6 3.0211 -2.1244 3.6676 17 6 3.4077 -2.3149 4.9416 18 7 3.2819 -1.1383 5.6211 19 1 3.4935 -1.0150 6.5597 20 6 2.8216 -0.1731 4.8027 21 6 2.5552 1.2585 5.1907 22 6 3.5803 1.8282 6.1854 23 6 2.3988 2.5200 6.8857 24 6 1.5068 1.4099 6.3053 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7093 1.1619 -3.4844 29 1 2.2491 -1.6318 1.1525 30 1 3.0006 -2.8631 2.8799 31 1 3.7557 -3.2479 5.3597 32 1 2.3745 1.9034 4.3307 33 1 4.0651 1.0670 6.7967 34 1 4.2878 2.5234 5.7334 35 1 2.1760 3.5109 6.4896 36 1 2.4652 2.5030 7.9734 37 1 0.5404 1.7674 5.9501 38 1 1.4237 0.5338 6.9485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345183234.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:51 Heat of formation + Delta-G solvation = 15.953948 kcal Electronic energy + Delta-G solvation = -19552.904346 eV Core-core repulsion = 16589.234100 eV Total energy + Delta-G solvation = -2963.670245 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.22254 -38.25313 -38.08477 -34.58902 -32.27019 -30.84616 -29.57421 -28.53887 -25.67542 -25.18937 -24.99905 -22.58458 -20.85308 -20.04991 -19.35175 -18.87233 -17.75908 -16.44315 -15.46985 -15.11261 -15.05145 -14.49909 -14.44642 -14.11319 -13.39487 -13.01731 -12.86200 -12.59288 -12.53593 -12.31751 -12.17522 -11.98903 -11.55670 -11.01679 -10.87892 -10.76705 -10.59628 -10.47923 -10.29272 -10.20907 -10.13109 -8.93809 -8.82877 -8.60330 -8.44122 -8.00329 -7.63216 -6.03012 -4.11465 2.13567 2.67245 3.28392 3.31763 3.36415 3.38312 4.30637 4.35252 4.53151 4.59602 4.64862 4.71523 4.98223 5.13509 5.20655 5.29072 5.50328 5.59534 5.63079 5.71236 5.80266 5.89988 5.98194 6.03377 6.12874 6.37235 6.56570 6.94552 7.00138 7.11190 7.17083 7.28879 7.58134 7.63419 7.73343 7.84887 8.05949 8.26749 8.86024 8.95034 9.37326 9.57600 11.03039 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030004 B = 0.004637 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.980884 B = 6037.338598 C = 6604.772732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.704 5.704 13 C 0.575 3.425 14 O -0.566 6.566 15 C -0.215 4.215 16 C -0.167 4.167 17 C -0.025 4.025 18 N -0.555 5.555 19 H 0.409 0.591 20 C 0.105 3.895 21 C -0.052 4.052 22 C -0.139 4.139 23 C -0.139 4.139 24 C -0.133 4.133 25 H 0.015 0.985 26 H 0.025 0.975 27 H 0.088 0.912 28 H 0.264 0.736 29 H 0.388 0.612 30 H 0.144 0.856 31 H 0.165 0.835 32 H 0.141 0.859 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.253 -3.487 18.437 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.350 5.350 13 C 0.362 3.638 14 O -0.448 6.448 15 C -0.225 4.225 16 C -0.192 4.192 17 C -0.152 4.152 18 N -0.151 5.151 19 H 0.245 0.755 20 C -0.012 4.012 21 C -0.071 4.071 22 C -0.177 4.177 23 C -0.177 4.177 24 C -0.171 4.171 25 H 0.034 0.966 26 H 0.044 0.956 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.220 0.780 30 H 0.162 0.838 31 H 0.182 0.818 32 H 0.158 0.842 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.983 -2.546 18.387 18.985 hybrid contribution 0.562 -1.167 -0.488 1.384 sum 4.544 -3.713 17.899 18.837 Atomic orbital electron populations 1.22066 0.98604 0.99005 1.00768 1.18697 0.90922 0.93978 0.80064 0.93412 1.21214 1.32198 1.13114 0.90421 0.92194 1.24877 0.94889 0.94981 0.98962 1.69898 1.36034 1.22502 1.23814 0.86528 0.79151 0.79593 0.81915 1.20208 1.21197 1.20224 1.46296 1.64999 1.13452 1.10247 1.17360 0.77738 0.86078 0.82576 1.90634 1.53051 1.15876 1.85259 1.20559 1.13454 0.94437 0.94083 1.22102 1.05411 0.95346 0.96356 1.21609 1.10277 0.89955 0.93402 1.41437 1.53179 1.08769 1.11665 0.75513 1.20008 1.00609 0.90958 0.89629 1.21602 0.96214 0.90243 0.99030 1.22993 0.96890 0.99961 0.97837 1.22811 0.96465 0.98723 0.99679 1.22953 0.98569 0.98529 0.97065 0.96631 0.95601 0.89300 0.92639 0.78004 0.83830 0.81783 0.84179 0.91127 0.90803 0.89636 0.91589 0.90686 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.26 37.16 0.34 -3.45 16 2 C 0.27 7.09 2.56 -69.08 -0.18 6.91 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -14.58 8.73 -34.44 -0.30 -14.89 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -25.52 11.32 55.43 0.63 -24.89 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.70 -15.98 5.07 -56.06 -0.28 -16.27 16 13 C 0.58 12.77 7.77 -12.59 -0.10 12.67 16 14 O -0.57 -14.14 14.27 5.25 0.07 -14.06 16 15 C -0.22 -3.85 6.29 -103.35 -0.65 -4.50 16 16 C -0.17 -2.43 10.56 -37.50 -0.40 -2.82 16 17 C -0.03 -0.29 11.89 -16.82 -0.20 -0.49 16 18 N -0.55 -6.20 5.72 -9.11 -0.05 -6.25 16 19 H 0.41 3.18 8.21 -40.82 -0.34 2.84 16 20 C 0.10 1.56 6.22 -81.89 -0.51 1.05 16 21 C -0.05 -0.72 3.93 -90.96 -0.36 -1.08 16 22 C -0.14 -1.46 7.62 -25.92 -0.20 -1.66 16 23 C -0.14 -1.33 8.08 -25.92 -0.21 -1.54 16 24 C -0.13 -1.51 7.63 -25.92 -0.20 -1.71 16 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.39 7.82 7.66 -40.82 -0.31 7.51 16 30 H 0.14 1.88 7.70 -52.48 -0.40 1.47 16 31 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.14 2.44 5.93 -51.93 -0.31 2.13 16 33 H 0.07 0.62 7.21 -51.93 -0.37 0.24 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 LS Contribution 314.49 15.07 4.74 4.74 Total: -1.00 -32.24 314.49 -8.32 -40.56 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.36 Total: 9.87 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -3.04 Total: -9.79 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.29 Total: -47.41 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.07 Total: -14.06 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.24 -8.32 -40.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345183234.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.517 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds