Wall clock time and date at job start Mon Mar 30 2020 06:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21631 * 120.00520 * 359.97438 * 13 12 2 15 15 C 1.47267 * 120.00276 * 179.97438 * 13 12 2 16 16 C 1.46691 * 126.93740 * 359.68116 * 15 13 12 17 17 C 1.34486 * 106.33125 * 179.82758 * 16 15 13 18 18 N 1.36452 * 108.85482 * 0.44209 * 17 16 15 19 19 H 0.96997 * 124.84686 * 179.68372 * 18 17 16 20 20 C 1.34661 * 110.29724 * 359.70629 * 18 17 16 21 21 C 1.50696 * 125.79810 * 180.02562 * 20 18 17 22 22 C 1.53781 * 113.61589 * 37.47387 * 21 20 18 23 23 C 1.53784 * 87.08056 * 220.01651 * 22 21 20 24 24 C 1.53776 * 113.61851 * 299.97098 * 21 20 18 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 30 30 H 1.08004 * 126.83580 * 0.02562 * 16 15 13 31 31 H 1.08001 * 125.57125 * 180.14142 * 17 16 15 32 32 H 1.09002 * 112.84757 * 168.77529 * 21 20 18 33 33 H 1.09000 * 113.61499 * 334.56221 * 22 21 20 34 34 H 1.09002 * 113.61501 * 105.47024 * 22 21 20 35 35 H 1.09005 * 113.61117 * 270.88520 * 23 22 21 36 36 H 1.08991 * 113.61331 * 139.98249 * 23 22 21 37 37 H 1.08990 * 113.61685 * 254.53257 * 24 21 20 38 38 H 1.09007 * 113.61280 * 25.35197 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8582 1.1619 2.4117 15 6 2.6375 -0.7127 3.5596 16 6 3.0211 -2.1244 3.6676 17 6 3.4077 -2.3149 4.9416 18 7 3.2819 -1.1383 5.6211 19 1 3.4935 -1.0150 6.5597 20 6 2.8216 -0.1731 4.8027 21 6 2.5552 1.2585 5.1907 22 6 3.5803 1.8282 6.1854 23 6 2.3988 2.5200 6.8857 24 6 1.5068 1.4099 6.3053 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7093 1.1619 -3.4844 29 1 2.2491 -1.6318 1.1525 30 1 3.0006 -2.8631 2.8799 31 1 3.7557 -3.2479 5.3597 32 1 2.3745 1.9034 4.3307 33 1 4.0651 1.0670 6.7967 34 1 4.2878 2.5234 5.7334 35 1 2.1760 3.5109 6.4896 36 1 2.4652 2.5030 7.9734 37 1 0.5404 1.7674 5.9501 38 1 1.4237 0.5338 6.9485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345183234.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:50 Heat of formation + Delta-G solvation = -5.439748 kcal Electronic energy + Delta-G solvation = -19553.832046 eV Core-core repulsion = 16589.234100 eV Total energy + Delta-G solvation = -2964.597946 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.31540 -39.95036 -39.08828 -36.61014 -34.27195 -32.20554 -30.64482 -30.39313 -27.33640 -26.54773 -26.10800 -24.16491 -22.16553 -21.56920 -20.61133 -20.28659 -18.86396 -18.26259 -17.08443 -16.75984 -16.39292 -15.97803 -15.78293 -15.35484 -14.93572 -14.62347 -14.36878 -14.00931 -13.65146 -13.58907 -13.41954 -13.17130 -13.02479 -12.94784 -12.83944 -12.70516 -12.25749 -12.13402 -11.65916 -11.38150 -11.24110 -11.10230 -10.64515 -10.50425 -9.86293 -9.54231 -9.01806 -8.15624 -6.33494 0.84645 1.45025 1.48240 1.55980 1.61937 2.26716 2.41714 2.73806 2.92129 3.14440 3.62878 3.73102 3.79359 4.02668 4.19384 4.26951 4.39041 4.57883 4.69436 4.75689 4.78143 4.88452 4.93175 5.03642 5.04725 5.07547 5.10501 5.14054 5.33832 5.46526 5.54893 5.65861 5.72958 5.85322 5.94537 6.10269 6.12520 6.72930 6.74164 7.11808 7.34430 7.68567 8.90910 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030004 B = 0.004637 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.980884 B = 6037.338598 C = 6604.772732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.272 3.728 3 H -0.004 1.004 4 C -0.548 4.548 5 H 0.071 0.929 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.263 1.263 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.703 5.703 13 C 0.567 3.433 14 O -0.608 6.608 15 C -0.266 4.266 16 C -0.193 4.193 17 C 0.007 3.993 18 N -0.533 5.533 19 H 0.431 0.569 20 C 0.113 3.887 21 C -0.074 4.074 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.129 4.129 25 H 0.009 0.991 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.266 0.734 29 H 0.400 0.600 30 H 0.151 0.849 31 H 0.215 0.785 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.743 -6.036 20.734 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.168 3.832 3 H 0.014 0.986 4 C -0.586 4.586 5 H 0.089 0.911 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.800 3.200 9 H -0.188 1.188 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.350 5.350 13 C 0.357 3.643 14 O -0.493 6.493 15 C -0.276 4.276 16 C -0.217 4.217 17 C -0.120 4.120 18 N -0.130 5.130 19 H 0.271 0.729 20 C -0.006 4.006 21 C -0.093 4.093 22 C -0.165 4.165 23 C -0.165 4.165 24 C -0.166 4.166 25 H 0.028 0.972 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.235 0.765 30 H 0.169 0.831 31 H 0.232 0.768 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.075 0.925 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.491 -5.133 20.735 22.055 hybrid contribution 0.103 -0.334 -1.118 1.171 sum 5.595 -5.467 19.617 21.119 Atomic orbital electron populations 1.21877 0.98399 0.99256 0.99396 1.18318 0.91059 0.91805 0.81980 0.98649 1.21510 1.32673 1.13573 0.90874 0.91099 1.25834 0.94816 0.95601 1.02342 1.70054 1.36992 1.23941 1.24671 0.85353 0.78613 0.78714 0.77369 1.18763 1.20945 1.19595 1.46059 1.65491 1.13926 1.09550 1.18101 0.76781 0.85787 0.83593 1.90606 1.54806 1.17846 1.86047 1.20360 1.17183 0.96680 0.93397 1.22278 1.07155 0.93783 0.98492 1.22276 1.06787 0.91011 0.91945 1.41397 1.51387 1.07825 1.12384 0.72881 1.20029 0.99468 0.91786 0.89346 1.21560 0.99545 0.89428 0.98782 1.23004 0.96433 1.00319 0.96739 1.22762 0.94860 0.97630 1.01259 1.22976 0.97262 1.00150 0.96250 0.97212 0.94305 0.91329 0.92511 0.76502 0.83109 0.76807 0.88866 0.88240 0.91499 0.90380 0.88600 0.92505 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.14 9.26 71.98 0.67 -6.47 16 2 C 0.27 15.34 2.56 44.25 0.11 15.45 16 3 H 0.00 -0.29 7.58 -2.39 -0.02 -0.31 16 4 C -0.55 -30.82 8.73 25.60 0.22 -30.60 16 5 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -54.67 11.32 21.45 0.24 -54.42 16 8 Si 0.98 43.42 29.54 68.60 2.03 45.44 16 9 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 12 N -0.70 -33.53 5.07 -449.52 -2.28 -35.80 16 13 C 0.57 26.73 7.77 86.62 0.67 27.41 16 14 O -0.61 -33.04 14.27 -4.13 -0.06 -33.10 16 15 C -0.27 -9.64 6.29 -19.04 -0.12 -9.76 16 16 C -0.19 -5.27 10.56 23.62 0.25 -5.02 16 17 C 0.01 0.13 11.89 83.12 0.99 1.12 16 18 N -0.53 -9.88 5.72 -182.73 -1.04 -10.93 16 19 H 0.43 4.43 8.21 -92.71 -0.76 3.66 16 20 C 0.11 3.27 6.22 41.78 0.26 3.53 16 21 C -0.07 -2.07 3.93 -11.02 -0.04 -2.12 16 22 C -0.13 -2.44 7.62 31.12 0.24 -2.21 16 23 C -0.13 -2.19 8.08 31.12 0.25 -1.94 16 24 C -0.13 -2.79 7.63 31.12 0.24 -2.55 16 25 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 26 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.07 4.02 6.07 -2.38 -0.01 4.01 16 28 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 29 H 0.40 16.65 7.66 -92.71 -0.71 15.94 16 30 H 0.15 3.73 7.70 -2.91 -0.02 3.70 16 31 H 0.22 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.09 3.56 5.93 -2.39 -0.01 3.54 16 33 H 0.10 1.32 7.21 -2.39 -0.02 1.31 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.09 1.63 8.09 -2.38 -0.02 1.61 16 Total: -1.00 -75.78 314.49 2.68 -73.09 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -0.39 Total: 27.64 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 4.19 Total: -11.93 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -3.08 Total: -101.15 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.06 Total: -33.10 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -75.78 2.68 -73.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345183234.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.653 kcal (2) G-P(sol) polarization free energy of solvation -75.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds