Wall clock time and date at job start Mon Mar 30 2020 06:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47409 * 2 1 4 4 C 1.50700 * 109.47460 * 120.00542 * 2 1 3 5 5 H 1.07996 * 120.00450 * 119.99494 * 4 2 1 6 6 C 1.37880 * 119.99855 * 299.99893 * 4 2 1 7 7 N 1.31514 * 120.00247 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99852 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47458 * 90.00242 * 8 6 4 10 10 H 1.48500 * 109.46835 * 210.00216 * 8 6 4 11 11 H 1.48499 * 109.47044 * 329.99990 * 8 6 4 12 12 N 1.46504 * 109.47009 * 240.00164 * 2 1 3 13 13 C 1.34777 * 119.99854 * 84.99752 * 12 2 1 14 14 O 1.21633 * 119.99979 * 0.02562 * 13 12 2 15 15 C 1.47264 * 119.99990 * 180.27781 * 13 12 2 16 16 C 1.46687 * 126.94155 * 359.41111 * 15 13 12 17 17 C 1.34487 * 106.33076 * 179.82743 * 16 15 13 18 18 N 1.36444 * 108.85737 * 0.43868 * 17 16 15 19 19 H 0.97006 * 124.85477 * 179.68456 * 18 17 16 20 20 C 1.34659 * 110.29637 * 359.70801 * 18 17 16 21 21 C 1.50707 * 125.79935 * 180.02562 * 20 18 17 22 22 C 1.53782 * 113.61237 * 37.47730 * 21 20 18 23 23 C 1.53786 * 87.07803 * 220.01409 * 22 21 20 24 24 C 1.53779 * 87.08249 * 25.43522 * 23 22 21 25 25 H 1.08999 * 109.47409 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46569 * 299.99572 * 1 2 3 27 27 H 1.09001 * 109.47135 * 59.99282 * 1 2 3 28 28 H 0.96990 * 120.00359 * 179.97438 * 7 6 4 29 29 H 0.97000 * 120.00410 * 265.00478 * 12 2 1 30 30 H 1.07995 * 126.83260 * 359.97438 * 16 15 13 31 31 H 1.07998 * 125.57093 * 180.14324 * 17 16 15 32 32 H 1.08999 * 112.84801 * 168.77859 * 21 20 18 33 33 H 1.09003 * 113.61689 * 334.56178 * 22 21 20 34 34 H 1.08996 * 113.61592 * 105.47018 * 22 21 20 35 35 H 1.08995 * 113.61505 * 270.88016 * 23 22 21 36 36 H 1.08999 * 113.68568 * 139.99163 * 23 22 21 37 37 H 1.08995 * 113.61303 * 220.02120 * 24 23 22 38 38 H 1.08995 * 113.69629 * 89.11865 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8744 2.6994 10 1 0.9774 1.9951 3.9071 11 1 0.8492 2.1772 1.4924 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0182 -2.3572 14 8 1.8580 1.1621 -2.4116 15 6 2.6320 -0.7138 -3.5611 16 6 3.0274 -2.1225 -3.6663 17 6 3.3959 -2.3174 -4.9449 18 7 3.2670 -1.1416 -5.6251 19 1 3.4750 -1.0191 -6.5646 20 6 2.8104 -0.1755 -4.8057 21 6 2.5411 1.2555 -5.1942 22 6 1.9482 1.4097 -6.6047 23 6 2.8582 2.6388 -6.7673 24 6 3.7825 1.9950 -5.7205 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.9034 -0.5283 4.4374 29 1 2.2489 -1.6318 -1.1528 30 1 3.0213 -2.8574 -2.8750 31 1 3.7422 -3.2507 -5.3636 32 1 1.9967 1.8069 -4.4276 33 1 2.1994 0.5886 -7.2761 34 1 0.8851 1.6501 -6.6076 35 1 2.3996 3.5689 -6.4319 36 1 3.3094 2.7217 -7.7561 37 1 4.2001 2.7078 -5.0095 38 1 4.5357 1.3337 -6.1487 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345183238.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:53 Heat of formation + Delta-G solvation = 24.020111 kcal Electronic energy + Delta-G solvation = -19626.024006 eV Core-core repulsion = 16662.703536 eV Total energy + Delta-G solvation = -2963.320470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.29752 -38.41931 -38.19784 -34.80642 -32.30292 -31.07393 -29.65612 -29.34120 -25.73771 -25.23668 -24.99494 -22.75445 -20.92452 -20.11041 -19.40894 -19.06905 -17.84694 -16.61543 -15.59284 -15.47118 -15.16282 -14.60387 -14.51943 -14.13835 -13.53720 -13.06570 -12.99124 -12.79439 -12.64794 -12.57921 -12.25327 -12.13373 -12.07204 -11.66688 -11.14985 -10.83955 -10.69899 -10.54380 -10.35614 -10.09173 -9.60415 -9.12110 -8.96334 -8.68427 -8.65566 -8.11377 -7.84416 -6.12659 -4.14054 2.04327 2.60763 3.21904 3.30069 3.41402 3.47358 4.16841 4.32352 4.39815 4.49104 4.58112 4.61453 4.90895 5.08266 5.13740 5.22641 5.44875 5.53737 5.55632 5.61899 5.74040 5.82079 5.92317 5.95830 6.06426 6.28402 6.43070 6.44867 6.54607 6.68491 6.92519 6.97049 7.10701 7.35580 7.46526 7.53303 7.66635 8.31311 8.72703 8.87068 9.19397 9.49726 10.99759 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027780 B = 0.005064 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.687059 B = 5527.430276 C = 6187.747296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.237 3.763 3 H 0.048 0.952 4 C -0.531 4.531 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.895 5.895 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.261 1.261 12 N -0.696 5.696 13 C 0.579 3.421 14 O -0.568 6.568 15 C -0.218 4.218 16 C -0.166 4.166 17 C -0.024 4.024 18 N -0.554 5.554 19 H 0.410 0.590 20 C 0.107 3.893 21 C -0.053 4.053 22 C -0.139 4.139 23 C -0.140 4.140 24 C -0.133 4.133 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.266 0.734 29 H 0.394 0.606 30 H 0.146 0.854 31 H 0.166 0.834 32 H 0.140 0.860 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.880 0.235 -21.413 21.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.133 3.867 3 H 0.066 0.934 4 C -0.569 4.569 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.533 5.533 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.223 1.223 11 H -0.186 1.186 12 N -0.343 5.343 13 C 0.366 3.634 14 O -0.450 6.450 15 C -0.228 4.228 16 C -0.190 4.190 17 C -0.151 4.151 18 N -0.150 5.150 19 H 0.246 0.754 20 C -0.010 4.010 21 C -0.072 4.072 22 C -0.176 4.176 23 C -0.177 4.177 24 C -0.171 4.171 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.228 0.772 30 H 0.163 0.837 31 H 0.183 0.817 32 H 0.157 0.843 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.712 1.032 -21.316 21.410 hybrid contribution -0.322 0.022 -0.079 0.333 sum 1.389 1.054 -21.395 21.466 Atomic orbital electron populations 1.22442 0.99450 1.00762 0.99159 1.19066 0.90025 0.94688 0.82884 0.93410 1.21077 1.32939 1.14299 0.88596 0.90243 1.24831 0.95547 0.96703 0.95525 1.69872 1.45197 1.40199 0.97982 0.86870 0.80507 0.83723 0.77334 1.20378 1.22292 1.18602 1.45962 1.65096 1.13741 1.09492 1.17378 0.77440 0.85982 0.82567 1.90631 1.53197 1.15891 1.85272 1.20439 1.13840 0.94602 0.93893 1.22121 1.05302 0.95315 0.96294 1.21631 1.10228 0.90006 0.93230 1.41445 1.53140 1.08745 1.11640 0.75432 1.20003 1.00403 0.90911 0.89681 1.21609 0.98346 0.89330 0.97883 1.22992 1.00239 0.98111 0.96303 1.22810 0.97828 0.97929 0.99125 1.22956 0.96206 0.99523 0.98434 0.92913 0.93626 0.94522 0.92405 0.77219 0.83661 0.81669 0.84260 0.91065 0.90840 0.89675 0.91531 0.90649 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 8.96 37.16 0.33 -3.41 16 2 C 0.24 5.94 2.15 -69.08 -0.15 5.79 16 3 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 4 C -0.53 -14.85 9.31 -34.44 -0.32 -15.17 16 5 H 0.08 2.33 7.98 -52.49 -0.42 1.91 16 6 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 7 N -0.90 -27.07 13.96 55.43 0.77 -26.29 16 8 Si 0.89 22.34 24.37 -169.99 -4.14 18.19 16 9 H -0.28 -6.75 6.87 56.52 0.39 -6.36 16 10 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.26 -6.56 6.53 56.52 0.37 -6.19 16 12 N -0.70 -15.08 5.07 -56.06 -0.28 -15.37 16 13 C 0.58 12.15 7.77 -12.59 -0.10 12.06 16 14 O -0.57 -13.31 14.27 5.25 0.07 -13.23 16 15 C -0.22 -3.72 6.29 -103.35 -0.65 -4.37 16 16 C -0.17 -2.32 10.56 -37.50 -0.40 -2.71 16 17 C -0.02 -0.26 11.89 -16.83 -0.20 -0.46 16 18 N -0.55 -5.87 5.72 -9.11 -0.05 -5.92 16 19 H 0.41 2.96 8.21 -40.82 -0.34 2.63 16 20 C 0.11 1.52 6.22 -81.88 -0.51 1.01 16 21 C -0.05 -0.69 3.93 -90.95 -0.36 -1.05 16 22 C -0.14 -1.36 7.62 -25.92 -0.20 -1.56 16 23 C -0.14 -1.25 8.08 -25.92 -0.21 -1.46 16 24 C -0.13 -1.44 7.63 -25.92 -0.20 -1.64 16 25 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.39 7.71 7.66 -40.82 -0.31 7.40 16 30 H 0.15 1.84 7.69 -52.49 -0.40 1.44 16 31 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.14 2.28 5.93 -51.93 -0.31 1.97 16 33 H 0.07 0.58 7.21 -51.93 -0.37 0.20 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 LS Contribution 307.68 15.07 4.64 4.64 Total: -1.00 -33.09 307.68 -7.27 -40.36 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.23 Total: 8.48 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -3.05 Total: -10.86 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.44 Total: -47.58 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.07 Total: -13.23 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.14 Total: 18.19 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.09 -7.27 -40.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345183238.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.383 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds