Wall clock time and date at job start Mon Mar 30 2020 06:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46860 * 2 1 4 4 C 1.34771 * 120.00057 * 269.68859 * 3 2 1 5 5 O 1.21283 * 120.00338 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.99840 * 0.02562 * 4 3 2 7 7 C 1.53001 * 109.47030 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.47030 * 180.02562 * 7 6 4 9 9 H 1.08001 * 119.99946 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00147 * 179.97438 * 8 7 6 11 11 N 1.31520 * 119.99749 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00269 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46766 * 90.00466 * 12 10 8 14 14 H 1.48496 * 109.47419 * 210.00139 * 12 10 8 15 15 H 1.48500 * 109.47355 * 330.00615 * 12 10 8 16 16 C 1.39948 * 119.99823 * 89.69238 * 3 2 1 17 17 C 1.39288 * 120.48668 * 264.70774 * 16 3 2 18 18 C 1.38499 * 118.35894 * 180.23805 * 17 16 3 19 19 C 1.38277 * 119.23831 * 359.49464 * 18 17 16 20 20 N 1.31854 * 120.91681 * 0.25245 * 19 18 17 21 21 C 1.31817 * 121.79817 * 359.97438 * 20 19 18 22 22 C 1.50697 * 119.67101 * 180.02562 * 21 20 19 23 23 H 1.09003 * 109.47439 * 296.95817 * 1 2 3 24 24 H 1.08995 * 109.47388 * 56.96113 * 1 2 3 25 25 H 1.09004 * 109.47277 * 176.95888 * 1 2 3 26 26 H 1.08993 * 109.47281 * 239.99643 * 2 1 3 27 27 H 1.08997 * 109.47092 * 119.99666 * 2 1 3 28 28 H 1.09001 * 109.47280 * 299.99759 * 6 4 3 29 29 H 1.08998 * 109.47305 * 59.99839 * 6 4 3 30 30 H 1.08995 * 109.47227 * 299.99732 * 7 6 4 31 31 H 1.08999 * 109.47390 * 60.00301 * 7 6 4 32 32 H 0.97006 * 119.99536 * 179.97438 * 11 10 8 33 33 H 1.08001 * 120.82127 * 0.02562 * 17 16 3 34 34 H 1.07995 * 120.38405 * 179.76433 * 18 17 16 35 35 H 1.08000 * 119.53942 * 180.22509 * 19 18 17 36 36 H 1.09002 * 109.47322 * 88.97715 * 22 21 20 37 37 H 1.09002 * 109.47228 * 208.97732 * 22 21 20 38 38 H 1.08996 * 109.47043 * 328.97739 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2488 2.0145 -1.1671 5 8 2.6535 3.1578 -1.1672 6 6 2.0038 1.3019 -2.4722 7 6 2.3407 2.2373 -3.6351 8 6 2.0951 1.5249 -4.9402 9 1 1.7351 0.5067 -4.9402 10 6 2.3298 2.1731 -6.1343 11 7 2.7686 3.4129 -6.1343 12 14 2.0261 1.2898 -7.7520 13 1 0.6254 1.5220 -8.1872 14 1 2.9579 1.8119 -8.7836 15 1 2.2533 -0.1665 -7.5712 16 6 2.2453 2.0431 1.2120 17 6 1.2654 2.8660 1.7622 18 6 1.5387 3.5036 2.9609 19 6 2.7612 3.2960 3.5729 20 7 3.6660 2.5064 3.0285 21 6 3.4483 1.8842 1.8869 22 6 4.5161 0.9922 1.3081 23 1 -0.3634 0.4659 0.9160 24 1 -0.3634 0.5603 -0.8614 25 1 -0.3634 -1.0262 -0.0545 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.6340 0.4141 -2.5253 29 1 0.9561 1.0079 -2.5346 30 1 1.7102 3.1248 -3.5819 31 1 3.3883 2.5316 -3.5730 32 1 2.9341 3.8688 -6.9744 33 1 0.3171 3.0061 1.2646 34 1 0.8039 4.1519 3.4148 35 1 2.9781 3.7879 4.5096 36 1 4.3927 -0.0198 1.6938 37 1 4.4296 0.9799 0.2215 38 1 5.4983 1.3712 1.5901 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362192313.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:05 Heat of formation + Delta-G solvation = -8.940037 kcal Electronic energy + Delta-G solvation = -19671.431275 eV Core-core repulsion = 16706.681545 eV Total energy + Delta-G solvation = -2964.749730 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.84253 -39.00913 -35.92486 -33.59210 -33.06324 -32.19493 -30.79947 -29.75867 -27.60509 -25.88407 -23.55017 -23.37992 -22.22412 -21.24764 -18.90520 -17.23209 -16.83241 -16.75161 -16.18108 -15.74345 -14.79557 -14.47486 -14.31536 -14.10994 -13.73578 -13.44009 -13.19905 -13.01716 -12.48547 -12.30573 -12.24821 -12.17499 -12.06228 -11.84297 -11.22887 -11.11452 -10.93647 -10.61996 -9.98329 -9.86382 -9.83474 -9.66737 -9.27769 -9.10896 -8.80909 -8.60033 -8.34329 -5.98240 -4.03049 0.99734 1.22432 3.06033 3.08987 3.31808 3.38251 3.40548 3.68029 4.28939 4.45082 4.72941 4.81313 4.86477 5.01778 5.15476 5.23143 5.25689 5.36802 5.40906 5.47401 5.58035 5.61899 5.71477 5.76529 6.03391 6.04396 6.08591 6.12356 6.19113 6.20834 6.42747 6.79017 6.99462 7.55072 7.71325 7.81561 7.92564 8.03788 8.34588 8.64079 9.05073 9.60765 11.12677 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030809 B = 0.004505 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.597066 B = 6214.335646 C = 6447.841125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.109 3.891 3 N -0.584 5.584 4 C 0.514 3.486 5 O -0.519 6.519 6 C -0.125 4.125 7 C 0.036 3.964 8 C -0.527 4.527 9 H 0.056 0.944 10 C 0.059 3.941 11 N -0.889 5.889 12 Si 0.893 3.107 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.104 3.896 17 C -0.065 4.065 18 C -0.173 4.173 19 C 0.098 3.902 20 N -0.480 5.480 21 C 0.133 3.867 22 C -0.102 4.102 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.023 0.977 31 H 0.024 0.976 32 H 0.261 0.739 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.156 0.844 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.611 -6.849 18.213 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.013 4.013 3 N -0.319 5.319 4 C 0.305 3.695 5 O -0.392 6.392 6 C -0.165 4.165 7 C -0.001 4.001 8 C -0.565 4.565 9 H 0.074 0.926 10 C -0.143 4.143 11 N -0.528 5.528 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.198 1.198 16 C 0.011 3.989 17 C -0.093 4.093 18 C -0.194 4.194 19 C -0.059 4.059 20 N -0.190 5.190 21 C -0.006 4.006 22 C -0.159 4.159 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.173 0.827 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.523 -6.198 18.455 19.631 hybrid contribution -1.168 -0.192 -1.259 1.728 sum -3.690 -6.390 17.196 18.713 Atomic orbital electron populations 1.22234 0.95787 1.02474 1.02632 1.21615 0.94630 0.81496 1.03512 1.45825 1.68270 1.14425 1.03337 1.21815 0.75687 0.86953 0.85047 1.90701 1.43483 1.18061 1.86960 1.21931 1.02442 1.00866 0.91259 1.18924 0.98037 0.93780 0.89380 1.21187 1.45039 0.99423 0.90897 0.92561 1.25022 0.95191 0.94870 0.99235 1.70003 1.45092 1.11047 1.26623 0.86591 0.78024 0.79828 0.83510 1.20677 1.21211 1.19846 1.18377 0.94166 0.97509 0.88831 1.21866 0.99086 0.93798 0.94504 1.22041 0.99126 1.01704 0.96521 1.22718 0.89521 0.94490 0.99207 1.67526 1.33015 1.07935 1.10553 1.21581 0.93242 0.95175 0.90594 1.20665 0.96623 0.97526 1.01118 0.92753 0.91600 0.91313 0.89024 0.90793 0.89981 0.89964 0.95875 0.95800 0.92921 0.84834 0.84659 0.82659 0.90509 0.90470 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.24 37.16 0.38 -1.33 16 2 C 0.11 1.20 5.93 -4.04 -0.02 1.18 16 3 N -0.58 -8.72 1.53 -113.34 -0.17 -8.89 16 4 C 0.51 9.97 7.34 -10.99 -0.08 9.89 16 5 O -0.52 -12.51 15.95 5.55 0.09 -12.42 16 6 C -0.13 -2.48 4.19 -27.88 -0.12 -2.60 16 7 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 8 C -0.53 -14.71 9.11 -34.44 -0.31 -15.03 16 9 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 12 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 16 C 0.10 1.55 4.46 -83.53 -0.37 1.17 16 17 C -0.07 -0.88 10.11 -39.09 -0.40 -1.27 16 18 C -0.17 -1.95 10.10 -39.47 -0.40 -2.35 16 19 C 0.10 1.14 11.18 -17.53 -0.20 0.95 16 20 N -0.48 -6.85 10.27 -9.32 -0.10 -6.95 16 21 C 0.13 1.96 6.80 -82.37 -0.56 1.40 16 22 C -0.10 -1.30 9.95 36.00 0.36 -0.95 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.75 7.30 -51.93 -0.38 0.37 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.95 6.43 -51.93 -0.33 0.62 16 27 H 0.07 0.68 8.05 -51.93 -0.42 0.27 16 28 H 0.08 1.46 7.40 -51.93 -0.38 1.08 16 29 H 0.08 1.48 7.27 -51.93 -0.38 1.10 16 30 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.09 7.16 -51.93 -0.37 0.71 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 323.62 15.07 4.88 4.88 Total: -1.00 -34.64 323.62 -7.13 -41.77 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -5.61 Total: -1.77 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -1.94 Total: -6.49 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.47 Total: -42.38 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.42 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.64 -7.13 -41.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362192313.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.831 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds