Wall clock time and date at job start Mon Mar 30 2020 06:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46860 * 2 1 4 4 C 1.34771 * 120.00057 * 269.68859 * 3 2 1 5 5 O 1.21283 * 120.00338 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.99840 * 0.02562 * 4 3 2 7 7 C 1.53001 * 109.47030 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.47030 * 180.02562 * 7 6 4 9 9 H 1.08001 * 119.99946 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00147 * 179.97438 * 8 7 6 11 11 N 1.31520 * 119.99749 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00269 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46766 * 90.00466 * 12 10 8 14 14 H 1.48496 * 109.47419 * 210.00139 * 12 10 8 15 15 H 1.48500 * 109.47355 * 330.00615 * 12 10 8 16 16 C 1.39948 * 119.99823 * 89.69238 * 3 2 1 17 17 C 1.39288 * 120.48668 * 264.70774 * 16 3 2 18 18 C 1.38499 * 118.35894 * 180.23805 * 17 16 3 19 19 C 1.38277 * 119.23831 * 359.49464 * 18 17 16 20 20 N 1.31854 * 120.91681 * 0.25245 * 19 18 17 21 21 C 1.31817 * 121.79817 * 359.97438 * 20 19 18 22 22 C 1.50697 * 119.67101 * 180.02562 * 21 20 19 23 23 H 1.09003 * 109.47439 * 296.95817 * 1 2 3 24 24 H 1.08995 * 109.47388 * 56.96113 * 1 2 3 25 25 H 1.09004 * 109.47277 * 176.95888 * 1 2 3 26 26 H 1.08993 * 109.47281 * 239.99643 * 2 1 3 27 27 H 1.08997 * 109.47092 * 119.99666 * 2 1 3 28 28 H 1.09001 * 109.47280 * 299.99759 * 6 4 3 29 29 H 1.08998 * 109.47305 * 59.99839 * 6 4 3 30 30 H 1.08995 * 109.47227 * 299.99732 * 7 6 4 31 31 H 1.08999 * 109.47390 * 60.00301 * 7 6 4 32 32 H 0.97006 * 119.99536 * 179.97438 * 11 10 8 33 33 H 1.08001 * 120.82127 * 0.02562 * 17 16 3 34 34 H 1.07995 * 120.38405 * 179.76433 * 18 17 16 35 35 H 1.08000 * 119.53942 * 180.22509 * 19 18 17 36 36 H 1.09002 * 109.47322 * 88.97715 * 22 21 20 37 37 H 1.09002 * 109.47228 * 208.97732 * 22 21 20 38 38 H 1.08996 * 109.47043 * 328.97739 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2488 2.0145 -1.1671 5 8 2.6535 3.1578 -1.1672 6 6 2.0038 1.3019 -2.4722 7 6 2.3407 2.2373 -3.6351 8 6 2.0951 1.5249 -4.9402 9 1 1.7351 0.5067 -4.9402 10 6 2.3298 2.1731 -6.1343 11 7 2.7686 3.4129 -6.1343 12 14 2.0261 1.2898 -7.7520 13 1 0.6254 1.5220 -8.1872 14 1 2.9579 1.8119 -8.7836 15 1 2.2533 -0.1665 -7.5712 16 6 2.2453 2.0431 1.2120 17 6 1.2654 2.8660 1.7622 18 6 1.5387 3.5036 2.9609 19 6 2.7612 3.2960 3.5729 20 7 3.6660 2.5064 3.0285 21 6 3.4483 1.8842 1.8869 22 6 4.5161 0.9922 1.3081 23 1 -0.3634 0.4659 0.9160 24 1 -0.3634 0.5603 -0.8614 25 1 -0.3634 -1.0262 -0.0545 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.6340 0.4141 -2.5253 29 1 0.9561 1.0079 -2.5346 30 1 1.7102 3.1248 -3.5819 31 1 3.3883 2.5316 -3.5730 32 1 2.9341 3.8688 -6.9744 33 1 0.3171 3.0061 1.2646 34 1 0.8039 4.1519 3.4148 35 1 2.9781 3.7879 4.5096 36 1 4.3927 -0.0198 1.6938 37 1 4.4296 0.9799 0.2215 38 1 5.4983 1.3712 1.5901 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362192313.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:05 Heat of formation + Delta-G solvation = -30.534937 kcal Electronic energy + Delta-G solvation = -19672.367700 eV Core-core repulsion = 16706.681545 eV Total energy + Delta-G solvation = -2965.686155 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.99481 -40.30839 -37.22875 -35.62918 -34.04122 -33.51780 -32.46807 -30.83613 -28.73103 -27.68783 -24.96542 -24.34197 -23.42988 -22.76774 -20.29102 -18.90731 -18.16144 -17.86308 -17.43863 -17.15608 -16.45794 -16.29828 -15.38770 -15.17362 -14.87252 -14.61057 -14.44388 -14.21212 -14.14010 -13.67511 -13.42286 -13.32356 -13.25940 -12.99279 -12.84359 -12.66774 -12.47288 -12.16652 -11.82471 -11.60602 -11.31003 -11.03911 -10.87386 -10.65184 -10.56601 -9.90505 -9.73264 -8.17731 -6.31969 -0.00372 0.21388 1.43067 1.45682 1.56319 1.56650 1.87479 2.43480 2.69435 3.15725 3.34928 3.70594 3.81364 3.92558 4.01313 4.11513 4.28382 4.35421 4.43504 4.46402 4.54251 4.59831 4.61402 4.65225 4.84651 4.92174 5.06725 5.07019 5.10632 5.14903 5.36451 5.44451 5.49883 5.60416 5.83199 5.88251 6.16320 6.22900 6.86121 6.92516 7.18999 7.38643 8.95061 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.030809 B = 0.004505 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.597066 B = 6214.335646 C = 6447.841125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.100 3.900 3 N -0.566 5.566 4 C 0.516 3.484 5 O -0.580 6.580 6 C -0.112 4.112 7 C 0.043 3.957 8 C -0.540 4.540 9 H 0.079 0.921 10 C -0.006 4.006 11 N -0.939 5.939 12 Si 0.974 3.026 13 H -0.272 1.272 14 H -0.288 1.288 15 H -0.253 1.253 16 C 0.076 3.924 17 C -0.080 4.080 18 C -0.165 4.165 19 C 0.096 3.904 20 N -0.500 5.500 21 C 0.115 3.885 22 C -0.099 4.099 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.106 0.894 30 H -0.020 1.020 31 H -0.019 1.019 32 H 0.262 0.738 33 H 0.137 0.863 34 H 0.171 0.829 35 H 0.192 0.808 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.816 -9.123 19.300 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 N -0.298 5.298 4 C 0.307 3.693 5 O -0.458 6.458 6 C -0.151 4.151 7 C 0.005 3.995 8 C -0.578 4.578 9 H 0.097 0.903 10 C -0.204 4.204 11 N -0.579 5.579 12 Si 0.797 3.203 13 H -0.197 1.197 14 H -0.214 1.214 15 H -0.177 1.177 16 C -0.016 4.016 17 C -0.107 4.107 18 C -0.184 4.184 19 C -0.061 4.061 20 N -0.210 5.210 21 C -0.023 4.023 22 C -0.156 4.156 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.126 0.874 29 H 0.124 0.876 30 H -0.002 1.002 31 H -0.001 1.001 32 H 0.071 0.929 33 H 0.155 0.845 34 H 0.189 0.811 35 H 0.209 0.791 36 H 0.121 0.879 37 H 0.077 0.923 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.754 -8.545 19.588 21.698 hybrid contribution -0.807 0.557 -1.449 1.750 sum -4.561 -7.988 18.139 20.338 Atomic orbital electron populations 1.22190 0.94592 1.03888 1.01912 1.21987 0.95601 0.79303 1.05148 1.45633 1.66446 1.15500 1.02198 1.21618 0.75246 0.86136 0.86251 1.90673 1.46683 1.20576 1.87892 1.21681 1.04307 0.99867 0.89245 1.18696 0.94475 0.93755 0.92540 1.21685 1.44408 1.00354 0.91348 0.90328 1.26136 0.94711 0.95568 1.03958 1.70191 1.46657 1.13274 1.27778 0.85324 0.77983 0.79268 0.77695 1.19739 1.21366 1.17666 1.18580 0.95186 0.99018 0.88843 1.22080 0.99120 0.93878 0.95593 1.22422 0.99685 1.00944 0.95393 1.23389 0.89146 0.93430 1.00110 1.67574 1.34032 1.08766 1.10641 1.21787 0.93457 0.95923 0.91168 1.20656 0.96204 0.98851 0.99873 0.92603 0.93328 0.88648 0.88139 0.88441 0.87358 0.87565 1.00177 1.00094 0.92913 0.84531 0.81124 0.79127 0.87896 0.92302 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 10.24 71.98 0.74 -2.17 16 2 C 0.10 1.98 5.93 86.38 0.51 2.49 16 3 N -0.57 -16.66 1.53 -630.88 -0.97 -17.62 16 4 C 0.52 20.57 7.34 87.66 0.64 21.22 16 5 O -0.58 -29.61 15.95 -3.04 -0.05 -29.66 16 6 C -0.11 -4.45 4.19 29.85 0.12 -4.32 16 7 C 0.04 2.39 4.26 29.85 0.13 2.52 16 8 C -0.54 -30.38 9.11 25.60 0.23 -30.14 16 9 H 0.08 3.98 7.74 -2.91 -0.02 3.95 16 10 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 11 N -0.94 -59.68 13.29 21.45 0.28 -59.39 16 12 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 13 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 14 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 15 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 16 C 0.08 2.24 4.46 38.24 0.17 2.41 16 17 C -0.08 -2.07 10.11 22.58 0.23 -1.84 16 18 C -0.16 -3.33 10.10 22.34 0.23 -3.10 16 19 C 0.10 2.04 11.18 84.70 0.95 2.98 16 20 N -0.50 -13.66 10.27 -183.39 -1.88 -15.54 16 21 C 0.11 3.32 6.80 42.71 0.29 3.61 16 22 C -0.10 -2.49 9.95 71.23 0.71 -1.78 16 23 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 24 H 0.05 1.02 7.30 -2.39 -0.02 1.00 16 25 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.10 1.82 6.43 -2.39 -0.02 1.81 16 27 H 0.10 1.52 8.05 -2.39 -0.02 1.50 16 28 H 0.11 3.73 7.40 -2.39 -0.02 3.71 16 29 H 0.11 3.71 7.27 -2.39 -0.02 3.69 16 30 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 31 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 32 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 33 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 34 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 35 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 36 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.06 1.68 7.16 -2.39 -0.02 1.66 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -79.83 323.62 5.86 -73.97 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.04 Total: 10.37 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 5.41 Total: -8.04 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -2.57 Total: -92.56 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.05 Total: -29.66 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -79.83 5.86 -73.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362192313.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.434 kcal (2) G-P(sol) polarization free energy of solvation -79.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds