Wall clock time and date at job start Mon Mar 30 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.47068 * 2 1 4 4 C 1.35900 * 117.00120 * 179.97438 * 3 2 1 5 5 C 1.38727 * 120.06017 * 179.97438 * 4 3 2 6 6 C 1.38144 * 119.94814 * 180.02562 * 5 4 3 7 7 C 1.38271 * 120.05192 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.93956 * 179.97438 * 7 6 5 9 9 H 1.08997 * 110.42053 * 27.30759 * 8 7 6 10 10 C 1.54487 * 110.37217 * 264.99627 * 8 7 6 11 11 C 1.54505 * 104.06179 * 217.19305 * 10 8 7 12 12 C 1.54472 * 104.06681 * 0.02562 * 11 10 8 13 13 H 1.09007 * 110.37121 * 265.03877 * 12 11 10 14 14 C 1.50695 * 110.37494 * 142.81177 * 12 11 10 15 15 H 1.07995 * 120.00004 * 359.97438 * 14 12 11 16 16 C 1.37882 * 120.00078 * 180.02562 * 14 12 11 17 17 N 1.31513 * 119.99771 * 179.97438 * 16 14 12 18 18 Si 1.86796 * 120.00074 * 359.97438 * 16 14 12 19 19 H 1.48508 * 109.46895 * 90.00411 * 18 16 14 20 20 H 1.48489 * 109.47391 * 210.00315 * 18 16 14 21 21 H 1.48505 * 109.47073 * 330.00683 * 18 16 14 22 22 O 1.44421 * 110.37173 * 149.62143 * 8 7 6 23 23 C 1.38264 * 120.11272 * 0.25194 * 7 6 5 24 24 C 1.38152 * 120.05447 * 359.44809 * 23 7 6 25 25 H 1.08996 * 109.47074 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47370 * 300.00500 * 1 2 3 27 27 H 1.09004 * 109.47014 * 60.00168 * 1 2 3 28 28 H 1.08993 * 109.47129 * 239.99949 * 2 1 3 29 29 H 1.08996 * 109.46842 * 119.99510 * 2 1 3 30 30 H 1.08005 * 120.02771 * 0.02562 * 5 4 3 31 31 H 1.07994 * 119.97478 * 179.97438 * 6 5 4 32 32 H 1.09003 * 110.50578 * 335.84180 * 10 8 7 33 33 H 1.09000 * 110.50989 * 98.54746 * 10 8 7 34 34 H 1.09003 * 110.50916 * 118.64999 * 11 10 8 35 35 H 1.08997 * 110.51173 * 241.35111 * 11 10 8 36 36 H 0.97008 * 119.99589 * 179.97438 * 17 16 14 37 37 H 1.07996 * 119.96939 * 179.70584 * 23 7 6 38 38 H 1.07991 * 120.02578 * 180.25007 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 3.8852 2.8068 0.0000 6 6 5.2551 2.9851 0.0001 7 6 6.0962 1.8877 0.0000 8 6 7.5902 2.0852 -0.0005 9 1 7.8484 3.0350 0.4678 10 6 8.1394 2.0301 -1.4434 11 6 9.4962 1.3047 -1.3012 12 6 9.6060 1.0068 0.2105 13 1 10.1750 1.7901 0.7113 14 6 10.2532 -0.3355 0.4350 15 1 10.5630 -0.9336 -0.4091 16 6 10.4489 -0.8005 1.7182 17 7 11.0133 -1.9721 1.9141 18 14 9.9124 0.2336 3.1784 19 1 8.5111 -0.1039 3.5358 20 1 10.7995 -0.0462 4.3358 21 1 9.9999 1.6732 2.8243 22 8 8.2419 0.9934 0.6842 23 6 5.5690 0.6096 -0.0053 24 6 4.1997 0.4259 0.0010 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.2286 3.6643 -0.0004 31 1 5.6693 3.9825 -0.0008 32 1 7.4676 1.4613 -2.0862 33 1 8.2838 3.0368 -1.8358 34 1 9.4952 0.3773 -1.8739 35 1 10.3113 1.9527 -1.6234 36 1 11.1513 -2.2991 2.8169 37 1 6.2281 -0.2459 -0.0101 38 1 3.7885 -0.5726 0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379761120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:12 Heat of formation + Delta-G solvation = -84.251480 kcal Electronic energy + Delta-G solvation = -19456.650453 eV Core-core repulsion = 16456.342223 eV Total energy + Delta-G solvation = -3000.308230 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.25624 -40.17053 -38.27106 -34.84348 -33.17499 -32.76256 -32.02947 -31.66293 -29.41195 -26.26910 -24.95869 -23.79557 -22.65074 -22.03464 -21.35376 -19.30791 -19.15537 -17.26328 -17.16983 -17.04893 -16.75167 -16.16171 -15.76783 -15.33183 -14.75779 -14.49981 -14.47158 -14.34999 -14.31513 -14.04401 -13.50520 -13.30540 -12.94301 -12.84858 -12.62220 -12.45527 -12.12872 -12.06635 -11.72645 -11.71763 -11.51881 -11.44488 -11.27383 -10.87914 -10.34537 -9.95876 -9.04508 -8.38575 -6.50864 0.37291 0.42214 1.32359 1.39822 1.48595 2.24502 2.33494 2.70438 2.89427 3.51264 3.80914 3.87238 3.93873 4.01180 4.03173 4.15841 4.19273 4.33662 4.38184 4.44546 4.49441 4.54768 4.67651 4.74989 4.89831 4.93059 4.95881 5.00864 5.13184 5.18371 5.22483 5.31322 5.39178 5.42580 5.52434 5.71984 5.79401 6.18512 6.36245 6.44130 6.65592 7.24379 8.75862 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024003 B = 0.005023 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.230180 B = 5572.967711 C = 6072.901838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 O -0.327 6.327 4 C 0.117 3.883 5 C -0.155 4.155 6 C -0.069 4.069 7 C -0.125 4.125 8 C 0.100 3.900 9 H 0.080 0.920 10 C -0.129 4.129 11 C -0.133 4.133 12 C 0.162 3.838 13 H 0.033 0.967 14 C -0.525 4.525 15 H 0.044 0.956 16 C 0.030 3.970 17 N -0.937 5.937 18 Si 0.959 3.041 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.250 1.250 22 O -0.399 6.399 23 C -0.074 4.074 24 C -0.214 4.214 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.153 0.847 31 H 0.158 0.842 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.269 0.731 37 H 0.107 0.893 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.711 10.410 -4.951 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 O -0.241 6.241 4 C 0.072 3.928 5 C -0.173 4.173 6 C -0.086 4.086 7 C -0.126 4.126 8 C 0.043 3.957 9 H 0.098 0.902 10 C -0.167 4.167 11 C -0.171 4.171 12 C 0.106 3.894 13 H 0.050 0.950 14 C -0.562 4.562 15 H 0.063 0.937 16 C -0.170 4.170 17 N -0.577 5.577 18 Si 0.785 3.215 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.174 1.174 22 O -0.320 6.320 23 C -0.092 4.092 24 C -0.233 4.233 25 H 0.116 0.884 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.171 0.829 31 H 0.176 0.824 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.125 0.875 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.906 10.277 -4.693 22.024 hybrid contribution 0.445 -0.650 0.645 1.018 sum -18.460 9.627 -4.049 21.210 Atomic orbital electron populations 1.21788 0.90910 1.04158 1.03423 1.23046 0.97243 0.81018 1.01890 1.86027 1.18467 1.30914 1.88698 1.19148 0.82508 0.94429 0.96692 1.20623 0.95142 0.95111 1.06438 1.20998 0.91874 0.98951 0.96816 1.19788 0.94394 0.93963 1.04432 1.21878 0.89347 0.91467 0.93042 0.90240 1.22890 0.95779 1.02034 0.95971 1.22787 0.97780 1.00032 0.96457 1.20970 0.80681 0.95382 0.92358 0.94965 1.21281 1.37902 1.03934 0.93081 0.93744 1.25877 0.93085 0.95807 1.02241 1.70042 1.44256 1.20451 1.22942 0.85505 0.77538 0.80560 0.77893 1.20850 1.21485 1.17385 1.89245 1.25151 1.51154 1.66446 1.20859 0.94524 0.97534 0.96276 1.21345 0.93630 0.99012 1.09324 0.88402 0.91643 0.91409 0.91515 0.91959 0.82943 0.82449 0.91398 0.87935 0.92948 0.89840 0.92196 0.87507 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 71.98 0.74 -1.13 16 2 C 0.04 0.78 5.46 71.98 0.39 1.18 16 3 O -0.33 -7.94 10.14 -92.42 -0.94 -8.88 16 4 C 0.12 3.19 6.69 22.51 0.15 3.34 16 5 C -0.15 -3.80 9.99 22.36 0.22 -3.58 16 6 C -0.07 -1.75 9.70 22.26 0.22 -1.54 16 7 C -0.13 -4.10 4.95 -19.85 -0.10 -4.20 16 8 C 0.10 3.56 3.50 30.35 0.11 3.67 16 9 H 0.08 2.52 8.09 -2.39 -0.02 2.50 16 10 C -0.13 -4.07 6.62 31.61 0.21 -3.86 16 11 C -0.13 -5.14 6.62 31.61 0.21 -4.93 16 12 C 0.16 7.79 2.50 30.35 0.08 7.87 16 13 H 0.03 1.55 7.08 -2.38 -0.02 1.53 16 14 C -0.52 -30.94 9.35 25.60 0.24 -30.70 16 15 H 0.04 2.84 7.81 -2.91 -0.02 2.82 16 16 C 0.03 1.80 5.47 84.66 0.46 2.26 16 17 N -0.94 -59.55 13.96 21.45 0.30 -59.25 16 18 Si 0.96 48.46 26.48 68.60 1.82 50.27 16 19 H -0.28 -14.56 7.11 99.48 0.71 -13.85 16 20 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 21 H -0.25 -11.80 6.48 99.48 0.64 -11.15 16 22 O -0.40 -18.83 8.28 -148.98 -1.23 -20.06 16 23 C -0.07 -2.58 9.36 22.26 0.21 -2.37 16 24 C -0.21 -6.36 9.04 22.37 0.20 -6.16 16 25 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16 29 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 30 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 31 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.07 2.13 7.86 -2.39 -0.02 2.11 16 33 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.05 2.19 7.71 -2.39 -0.02 2.17 16 35 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.27 15.95 8.31 -92.70 -0.77 15.17 16 37 H 0.11 4.32 7.53 -2.91 -0.02 4.30 16 38 H 0.14 3.53 6.30 -2.92 -0.02 3.51 16 Total: -1.00 -70.66 311.92 4.26 -66.40 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.97 Total: 11.68 kcal Atomic # 6 Polarization: -43.50 SS G_CDS: 3.34 Total: -40.16 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.30 Total: -59.25 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -2.17 Total: -28.94 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.82 Total: 50.27 kcal Total: -70.66 4.26 -66.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379761120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.850 kcal (2) G-P(sol) polarization free energy of solvation -70.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds