Wall clock time and date at job start Mon Mar 30 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47386 * 2 1 4 4 C 1.35898 * 116.99694 * 180.02562 * 3 2 1 5 5 C 1.38735 * 120.05254 * 179.97438 * 4 3 2 6 6 C 1.38144 * 119.94607 * 179.97438 * 5 4 3 7 7 C 1.38265 * 120.05233 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.94446 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.82413 * 159.15423 * 8 7 6 10 10 C 1.54387 * 109.83062 * 280.04618 * 8 7 6 11 11 C 1.55306 * 102.25489 * 140.86576 * 10 8 7 12 12 C 1.54947 * 100.94043 * 325.86822 * 11 10 8 13 13 H 1.09005 * 110.30685 * 277.52438 * 12 11 10 14 14 C 1.50707 * 110.30679 * 155.36032 * 12 11 10 15 15 H 1.07996 * 120.00334 * 359.97438 * 14 12 11 16 16 C 1.37877 * 119.99457 * 179.97438 * 14 12 11 17 17 N 1.31515 * 120.00672 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99609 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47454 * 59.99762 * 18 16 14 20 20 H 1.48499 * 109.47454 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47072 * 299.99787 * 18 16 14 22 22 O 1.43241 * 109.82781 * 38.17364 * 8 7 6 23 23 C 1.38269 * 120.11630 * 0.04162 * 7 6 5 24 24 C 1.38142 * 120.04900 * 359.95598 * 23 7 6 25 25 H 1.08996 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46920 * 300.00247 * 1 2 3 27 27 H 1.09006 * 109.47065 * 60.00159 * 1 2 3 28 28 H 1.08999 * 109.46920 * 239.99753 * 2 1 3 29 29 H 1.08998 * 109.47220 * 120.00123 * 2 1 3 30 30 H 1.08002 * 120.02704 * 359.70561 * 5 4 3 31 31 H 1.08001 * 119.97447 * 179.97438 * 6 5 4 32 32 H 1.09001 * 110.84114 * 259.05939 * 10 8 7 33 33 H 1.09004 * 110.84528 * 22.67763 * 10 8 7 34 34 H 1.09000 * 111.12107 * 83.78117 * 11 10 8 35 35 H 1.08994 * 111.12733 * 207.90742 * 11 10 8 36 36 H 0.96996 * 120.00333 * 179.97438 * 17 16 14 37 37 H 1.07992 * 119.97612 * 179.97438 * 23 7 6 38 38 H 1.08005 * 120.02253 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 3.8853 2.8067 -0.0011 6 6 5.2551 2.9850 -0.0011 7 6 6.0963 1.8876 0.0000 8 6 7.5903 2.0849 -0.0006 9 1 8.0823 1.1838 0.3652 10 6 8.0760 2.4030 -1.4312 11 6 9.1633 3.4826 -1.1778 12 6 8.5633 4.2232 0.0439 13 1 7.8261 4.9566 -0.2830 14 6 9.6552 4.8948 0.8363 15 1 10.6833 4.8127 0.5163 16 6 9.3413 5.6141 1.9700 17 7 8.0892 5.7145 2.3595 18 14 10.6947 6.4460 2.9527 19 1 11.4017 7.4264 2.0901 20 1 10.0997 7.1504 4.1168 21 1 11.6585 5.4231 3.4322 22 8 7.9335 3.1997 0.8308 23 6 5.5690 0.6094 0.0002 24 6 4.1998 0.4259 0.0003 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.2286 3.6641 -0.0059 31 1 5.6695 3.9824 -0.0020 32 1 8.5087 1.5189 -1.8993 33 1 7.2635 2.8054 -2.0362 34 1 10.1206 3.0249 -0.9283 35 1 9.2610 4.1503 -2.0336 36 1 7.8685 6.2202 3.1572 37 1 6.2281 -0.2461 0.0006 38 1 3.7885 -0.5728 0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379761122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:16 Heat of formation + Delta-G solvation = -68.259446 kcal Electronic energy + Delta-G solvation = -19398.615614 eV Core-core repulsion = 16399.000850 eV Total energy + Delta-G solvation = -2999.614763 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.97332 -38.52394 -36.74608 -32.73523 -32.02133 -30.92054 -30.53529 -30.17051 -27.40056 -24.60941 -23.83664 -22.09238 -21.59592 -20.31402 -19.88879 -18.07895 -16.58823 -16.09122 -15.84869 -15.66548 -14.78756 -14.62429 -14.03487 -13.95172 -13.37579 -13.25586 -13.06376 -12.75838 -12.44667 -12.33020 -11.94527 -11.78930 -11.65314 -11.59960 -10.93299 -10.80500 -10.60943 -10.52062 -10.39582 -10.28980 -10.13421 -9.74713 -9.10123 -8.61760 -8.55757 -8.01383 -7.63817 -5.99300 -4.12313 1.72787 1.78730 3.29084 3.33767 3.38637 3.40679 4.11600 4.43931 4.77936 4.82548 5.04915 5.06817 5.15918 5.18685 5.34448 5.38989 5.49742 5.56487 5.61464 5.72056 5.78639 5.80258 5.89232 6.10413 6.21357 6.26831 6.32279 6.48048 6.59870 6.62308 6.72867 6.76682 6.84923 7.16911 7.21802 7.58915 7.64479 7.90384 8.27437 8.64718 9.03743 9.58632 11.08114 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.032021 B = 0.004353 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.220020 B = 6430.637227 C = 6984.272596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.320 6.320 4 C 0.114 3.886 5 C -0.153 4.153 6 C -0.048 4.048 7 C -0.114 4.114 8 C 0.113 3.887 9 H 0.065 0.935 10 C -0.146 4.146 11 C -0.148 4.148 12 C 0.209 3.791 13 H 0.029 0.971 14 C -0.535 4.535 15 H 0.062 0.938 16 C 0.078 3.922 17 N -0.862 5.862 18 Si 0.892 3.108 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 O -0.349 6.349 23 C -0.082 4.082 24 C -0.214 4.214 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.126 0.874 31 H 0.138 0.862 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.262 0.738 37 H 0.119 0.881 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.411 -11.004 -6.408 16.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.235 6.235 4 C 0.070 3.930 5 C -0.172 4.172 6 C -0.066 4.066 7 C -0.114 4.114 8 C 0.053 3.947 9 H 0.083 0.917 10 C -0.184 4.184 11 C -0.185 4.185 12 C 0.154 3.846 13 H 0.046 0.954 14 C -0.572 4.572 15 H 0.080 0.920 16 C -0.128 4.128 17 N -0.498 5.498 18 Si 0.719 3.281 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 O -0.269 6.269 23 C -0.100 4.100 24 C -0.233 4.233 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.144 0.856 31 H 0.156 0.844 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.137 0.863 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.740 -10.765 -6.053 16.367 hybrid contribution 0.743 0.069 0.436 0.864 sum -9.997 -10.697 -5.617 15.682 Atomic orbital electron populations 1.21767 0.93088 1.02549 1.03442 1.22694 0.95533 0.82603 1.01179 1.86038 1.19615 1.28637 1.89206 1.18942 0.81683 0.94313 0.98087 1.20447 0.95361 0.94438 1.06947 1.21000 0.91340 1.00103 0.94169 1.20427 0.97085 0.92737 1.01159 1.21373 0.88779 0.93363 0.91141 0.91689 1.23131 0.99123 0.99442 0.96708 1.23344 0.98002 0.97000 1.00200 1.20551 0.91414 0.85933 0.86668 0.95361 1.21069 0.93079 1.31524 1.11577 0.92013 1.25071 0.95313 0.95306 0.97079 1.70006 1.16986 1.39064 1.23790 0.86691 0.82209 0.79591 0.79631 1.20144 1.21190 1.20105 1.88900 1.79044 1.25971 1.32965 1.20730 0.94005 0.96703 0.98544 1.21041 0.94283 0.97406 1.10577 0.90637 0.91567 0.91637 0.92343 0.92272 0.85618 0.84405 0.91784 0.91548 0.91583 0.91911 0.92834 0.86252 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.06 0.57 5.46 37.16 0.20 0.77 16 3 O -0.32 -4.63 10.14 -19.42 -0.20 -4.83 16 4 C 0.11 1.83 6.69 -39.22 -0.26 1.57 16 5 C -0.15 -2.66 9.99 -39.43 -0.39 -3.05 16 6 C -0.05 -0.93 9.33 -39.61 -0.37 -1.30 16 7 C -0.11 -2.13 4.85 -104.60 -0.51 -2.64 16 8 C 0.11 2.29 3.73 -27.16 -0.10 2.18 16 9 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 10 C -0.15 -2.63 6.53 -24.78 -0.16 -2.79 16 11 C -0.15 -3.04 6.53 -24.48 -0.16 -3.20 16 12 C 0.21 5.36 3.22 -26.85 -0.09 5.27 16 13 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 14 C -0.54 -15.01 8.79 -34.44 -0.30 -15.32 16 15 H 0.06 1.68 7.76 -52.49 -0.41 1.27 16 16 C 0.08 2.22 5.43 -17.82 -0.10 2.13 16 17 N -0.86 -25.61 13.05 55.43 0.72 -24.89 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 O -0.35 -9.04 9.65 -35.23 -0.34 -9.38 16 23 C -0.08 -1.30 9.67 -39.60 -0.38 -1.69 16 24 C -0.21 -3.18 9.04 -39.44 -0.36 -3.53 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 29 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 30 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.14 2.93 7.67 -52.49 -0.40 2.52 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.15 7.82 -51.93 -0.41 0.74 16 34 H 0.07 1.35 8.04 -51.93 -0.42 0.93 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.12 1.62 8.05 -52.49 -0.42 1.20 16 38 H 0.12 1.43 6.30 -52.48 -0.33 1.10 16 LS Contribution 317.39 15.07 4.78 4.78 Total: -1.00 -31.19 317.39 -8.34 -39.52 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.69 Total: 0.77 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -2.60 Total: -22.41 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.72 Total: -24.89 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.54 Total: -14.21 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.19 -8.34 -39.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379761122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.735 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds