Wall clock time and date at job start Mon Mar 30 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47386 * 2 1 4 4 C 1.35898 * 116.99694 * 180.02562 * 3 2 1 5 5 C 1.38735 * 120.05254 * 179.97438 * 4 3 2 6 6 C 1.38144 * 119.94607 * 179.97438 * 5 4 3 7 7 C 1.38265 * 120.05233 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.94446 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.82413 * 159.15423 * 8 7 6 10 10 C 1.54387 * 109.83062 * 280.04618 * 8 7 6 11 11 C 1.55306 * 102.25489 * 140.86576 * 10 8 7 12 12 C 1.54947 * 100.94043 * 325.86822 * 11 10 8 13 13 H 1.09005 * 110.30685 * 277.52438 * 12 11 10 14 14 C 1.50707 * 110.30679 * 155.36032 * 12 11 10 15 15 H 1.07996 * 120.00334 * 359.97438 * 14 12 11 16 16 C 1.37877 * 119.99457 * 179.97438 * 14 12 11 17 17 N 1.31515 * 120.00672 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99609 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47454 * 59.99762 * 18 16 14 20 20 H 1.48499 * 109.47454 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47072 * 299.99787 * 18 16 14 22 22 O 1.43241 * 109.82781 * 38.17364 * 8 7 6 23 23 C 1.38269 * 120.11630 * 0.04162 * 7 6 5 24 24 C 1.38142 * 120.04900 * 359.95598 * 23 7 6 25 25 H 1.08996 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46920 * 300.00247 * 1 2 3 27 27 H 1.09006 * 109.47065 * 60.00159 * 1 2 3 28 28 H 1.08999 * 109.46920 * 239.99753 * 2 1 3 29 29 H 1.08998 * 109.47220 * 120.00123 * 2 1 3 30 30 H 1.08002 * 120.02704 * 359.70561 * 5 4 3 31 31 H 1.08001 * 119.97447 * 179.97438 * 6 5 4 32 32 H 1.09001 * 110.84114 * 259.05939 * 10 8 7 33 33 H 1.09004 * 110.84528 * 22.67763 * 10 8 7 34 34 H 1.09000 * 111.12107 * 83.78117 * 11 10 8 35 35 H 1.08994 * 111.12733 * 207.90742 * 11 10 8 36 36 H 0.96996 * 120.00333 * 179.97438 * 17 16 14 37 37 H 1.07992 * 119.97612 * 179.97438 * 23 7 6 38 38 H 1.08005 * 120.02253 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 3.8853 2.8067 -0.0011 6 6 5.2551 2.9850 -0.0011 7 6 6.0963 1.8876 0.0000 8 6 7.5903 2.0849 -0.0006 9 1 8.0823 1.1838 0.3652 10 6 8.0760 2.4030 -1.4312 11 6 9.1633 3.4826 -1.1778 12 6 8.5633 4.2232 0.0439 13 1 7.8261 4.9566 -0.2830 14 6 9.6552 4.8948 0.8363 15 1 10.6833 4.8127 0.5163 16 6 9.3413 5.6141 1.9700 17 7 8.0892 5.7145 2.3595 18 14 10.6947 6.4460 2.9527 19 1 11.4017 7.4264 2.0901 20 1 10.0997 7.1504 4.1168 21 1 11.6585 5.4231 3.4322 22 8 7.9335 3.1997 0.8308 23 6 5.5690 0.6094 0.0002 24 6 4.1998 0.4259 0.0003 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.2286 3.6641 -0.0059 31 1 5.6695 3.9824 -0.0020 32 1 8.5087 1.5189 -1.8993 33 1 7.2635 2.8054 -2.0362 34 1 10.1206 3.0249 -0.9283 35 1 9.2610 4.1503 -2.0336 36 1 7.8685 6.2202 3.1572 37 1 6.2281 -0.2461 0.0006 38 1 3.7885 -0.5728 0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379761122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:16 Heat of formation + Delta-G solvation = -86.476550 kcal Electronic energy + Delta-G solvation = -19399.405567 eV Core-core repulsion = 16399.000850 eV Total energy + Delta-G solvation = -3000.404716 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.22717 -40.04422 -38.11762 -34.75671 -33.09475 -32.57874 -31.82666 -31.57466 -29.10070 -26.36000 -24.89907 -23.52450 -22.82525 -22.10284 -21.33565 -19.22848 -18.62836 -17.36644 -17.10159 -17.00438 -16.57927 -16.23595 -15.66694 -15.32051 -14.64619 -14.38982 -14.36631 -14.13125 -13.80869 -13.71878 -13.52332 -13.22116 -12.91915 -12.75112 -12.58519 -12.41036 -12.21622 -12.14016 -11.98255 -11.68776 -11.45647 -11.41631 -11.00321 -10.69361 -9.94492 -9.87571 -8.98293 -8.13637 -6.34853 0.41907 0.46010 1.40824 1.43974 1.51527 2.27912 2.41561 2.76393 3.10360 3.74656 3.85503 3.86438 3.95303 4.01730 4.08559 4.18139 4.26116 4.38520 4.44326 4.46935 4.61402 4.64148 4.74496 4.83756 4.93754 4.96016 4.97486 5.08926 5.14784 5.20927 5.23259 5.34958 5.43427 5.56193 5.76207 5.83880 5.86043 6.19912 6.50265 6.62877 7.06817 7.41535 8.93828 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.032021 B = 0.004353 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.220020 B = 6430.637227 C = 6984.272596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.334 6.334 4 C 0.118 3.882 5 C -0.168 4.168 6 C -0.070 4.070 7 C -0.134 4.134 8 C 0.102 3.898 9 H 0.079 0.921 10 C -0.131 4.131 11 C -0.140 4.140 12 C 0.203 3.797 13 H -0.009 1.009 14 C -0.557 4.557 15 H 0.066 0.934 16 C 0.022 3.978 17 N -0.902 5.902 18 Si 0.962 3.038 19 H -0.263 1.263 20 H -0.284 1.284 21 H -0.269 1.269 22 O -0.386 6.386 23 C -0.074 4.074 24 C -0.203 4.203 25 H 0.103 0.897 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.261 0.739 37 H 0.151 0.849 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.490 -13.681 -7.008 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 O -0.249 6.249 4 C 0.073 3.927 5 C -0.187 4.187 6 C -0.088 4.088 7 C -0.135 4.135 8 C 0.044 3.956 9 H 0.097 0.903 10 C -0.169 4.169 11 C -0.178 4.178 12 C 0.148 3.852 13 H 0.009 0.991 14 C -0.594 4.594 15 H 0.084 0.916 16 C -0.180 4.180 17 N -0.540 5.540 18 Si 0.786 3.214 19 H -0.188 1.188 20 H -0.210 1.210 21 H -0.194 1.194 22 O -0.306 6.306 23 C -0.092 4.092 24 C -0.222 4.222 25 H 0.122 0.878 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.145 0.855 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.169 0.831 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.820 -13.456 -6.673 18.511 hybrid contribution 0.624 0.809 0.594 1.182 sum -10.195 -12.647 -6.079 17.345 Atomic orbital electron populations 1.21809 0.91429 1.04251 1.03060 1.23107 0.96943 0.80725 1.02431 1.86045 1.18493 1.31582 1.88782 1.18983 0.82842 0.93952 0.96970 1.20461 0.94621 0.95852 1.07730 1.20745 0.92559 0.98886 0.96657 1.20366 0.96047 0.93877 1.03172 1.21656 0.90203 0.91919 0.91835 0.90305 1.23074 0.98214 0.99927 0.95647 1.23220 0.98603 0.97571 0.98361 1.20401 0.90253 0.86159 0.88413 0.99120 1.21543 0.93906 1.31971 1.12007 0.91578 1.25983 0.97652 0.96070 0.98333 1.70174 1.19220 1.40254 1.24308 0.85580 0.79111 0.78678 0.78033 1.18798 1.20983 1.19438 1.88787 1.79498 1.27400 1.34948 1.21023 0.95068 0.96158 0.96982 1.21418 0.93597 0.98702 1.08460 0.87850 0.92165 0.91863 0.90707 0.91205 0.85493 0.88172 0.87968 0.91353 0.91210 0.90525 0.93047 0.83136 0.82390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 71.98 0.74 -1.21 16 2 C 0.04 0.74 5.46 71.98 0.39 1.13 16 3 O -0.33 -9.09 10.14 -92.40 -0.94 -10.02 16 4 C 0.12 3.62 6.69 22.51 0.15 3.77 16 5 C -0.17 -6.01 9.99 22.37 0.22 -5.79 16 6 C -0.07 -2.86 9.33 22.25 0.21 -2.65 16 7 C -0.13 -5.03 4.85 -19.85 -0.10 -5.13 16 8 C 0.10 4.14 3.73 30.32 0.11 4.25 16 9 H 0.08 2.91 8.03 -2.39 -0.02 2.89 16 10 C -0.13 -4.55 6.53 31.86 0.21 -4.34 16 11 C -0.14 -5.73 6.53 32.05 0.21 -5.52 16 12 C 0.20 10.85 3.22 30.52 0.10 10.94 16 13 H -0.01 -0.52 8.08 -2.38 -0.02 -0.54 16 14 C -0.56 -32.15 8.79 25.60 0.23 -31.92 16 15 H 0.07 3.63 7.76 -2.91 -0.02 3.61 16 16 C 0.02 1.26 5.43 84.65 0.46 1.72 16 17 N -0.90 -56.06 13.05 21.45 0.28 -55.78 16 18 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 O -0.39 -20.79 9.65 -148.98 -1.44 -22.22 16 23 C -0.07 -2.19 9.67 22.25 0.22 -1.97 16 24 C -0.20 -5.40 9.04 22.36 0.20 -5.19 16 25 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.07 1.08 7.66 -2.39 -0.02 1.07 16 29 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 30 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 31 H 0.10 4.75 7.67 -2.91 -0.02 4.73 16 32 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.07 2.33 7.82 -2.38 -0.02 2.31 16 34 H 0.07 2.78 8.04 -2.39 -0.02 2.76 16 35 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 37 H 0.15 3.44 8.05 -2.91 -0.02 3.42 16 38 H 0.16 2.96 6.30 -2.91 -0.02 2.94 16 Total: -1.00 -70.90 317.39 4.31 -66.59 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 1.03 Total: 16.43 kcal Atomic # 6 Polarization: -45.26 SS G_CDS: 3.35 Total: -41.91 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.28 Total: -55.78 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -2.37 Total: -32.25 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -70.90 4.31 -66.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379761122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.891 kcal (2) G-P(sol) polarization free energy of solvation -70.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds