Wall clock time and date at job start Mon Mar 30 2020 06:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99919 * 2 1 4 4 C 1.53001 * 109.47249 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.82508 * 305.57430 * 4 3 2 6 6 C 1.38237 * 119.99849 * 269.15609 * 5 4 3 7 7 C 1.38236 * 119.99896 * 179.76637 * 6 5 4 8 8 C 1.38228 * 120.00135 * 0.50238 * 7 6 5 9 9 C 1.38245 * 119.99942 * 359.75267 * 8 7 6 10 10 C 1.38232 * 119.99881 * 359.97438 * 9 8 7 11 11 C 1.54374 * 109.83165 * 184.58866 * 4 3 2 12 12 C 1.55307 * 102.25684 * 261.84549 * 11 4 3 13 13 C 1.54948 * 100.94053 * 325.86845 * 12 11 4 14 14 H 1.09002 * 110.38982 * 277.48582 * 13 12 11 15 15 C 1.50694 * 110.30909 * 155.35818 * 13 12 11 16 16 H 1.08000 * 120.00563 * 2.83267 * 15 13 12 17 17 C 1.37885 * 119.99902 * 182.83430 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 O 1.43243 * 109.82593 * 66.45642 * 4 3 2 24 24 H 1.08993 * 109.46958 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47242 * 299.99796 * 1 2 3 26 26 H 1.09007 * 109.46770 * 59.99565 * 1 2 3 27 27 H 1.09001 * 109.46846 * 60.00219 * 3 2 1 28 28 H 1.08994 * 109.47327 * 300.00315 * 3 2 1 29 29 H 1.08007 * 119.99569 * 0.02562 * 6 5 4 30 30 H 1.08004 * 119.99592 * 180.23549 * 7 6 5 31 31 H 1.07998 * 120.00217 * 179.72533 * 8 7 6 32 32 H 1.07994 * 119.99826 * 179.97438 * 9 8 7 33 33 H 1.07997 * 120.00264 * 179.97438 * 10 9 8 34 34 H 1.09000 * 110.84675 * 20.03541 * 11 4 3 35 35 H 1.09006 * 110.84659 * 143.45540 * 11 4 3 36 36 H 1.08991 * 111.12469 * 207.95039 * 12 11 4 37 37 H 1.08998 * 111.12139 * 83.78556 * 12 11 4 38 38 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 6 3.9794 0.3225 1.1541 6 6 4.2764 0.8999 2.3745 7 6 4.6790 0.1084 3.4339 8 6 4.7946 -1.2593 3.2700 9 6 4.5027 -1.8362 2.0481 10 6 4.0947 -1.0453 0.9903 11 6 4.1718 2.5865 0.1168 12 6 4.5139 2.9168 -1.3616 13 6 4.8768 1.5103 -1.9009 14 1 5.9099 1.2643 -1.6552 15 6 4.6663 1.4514 -3.3919 16 1 4.3529 2.3347 -3.9284 17 6 4.8738 0.2696 -4.0713 18 7 5.2560 -0.8060 -3.4181 19 14 4.6122 0.1965 -5.9194 20 1 4.9000 -1.1767 -6.4061 21 1 3.2045 0.5489 -6.2344 22 1 5.5248 1.1591 -6.5870 23 8 3.9778 0.6096 -1.2344 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8465 -0.8899 29 1 4.1898 1.9690 2.5013 30 1 4.9073 0.5591 4.3884 31 1 5.1134 -1.8772 4.0964 32 1 4.5934 -2.9046 1.9199 33 1 3.8670 -1.4959 0.0355 34 1 3.4574 3.3046 0.5194 35 1 5.0732 2.5538 0.7288 36 1 5.3655 3.5939 -1.4259 37 1 3.6486 3.3262 -1.8830 38 1 5.4016 -1.6375 -3.8960 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379774800.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:34 Heat of formation + Delta-G solvation = -63.208338 kcal Electronic energy + Delta-G solvation = -20500.440781 eV Core-core repulsion = 17501.045050 eV Total energy + Delta-G solvation = -2999.395731 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.61735 -37.63907 -36.78724 -32.90577 -31.58442 -30.95571 -30.12252 -28.56611 -26.83423 -25.28279 -23.39608 -22.36305 -21.81798 -20.11895 -19.26723 -16.76745 -16.53110 -15.90112 -15.48109 -15.14226 -14.71269 -14.60093 -14.26040 -14.09637 -13.35159 -13.03502 -12.88867 -12.45360 -12.23323 -11.87759 -11.83012 -11.76352 -11.16906 -11.02765 -10.87899 -10.72994 -10.53503 -10.39262 -10.19989 -10.04825 -9.74027 -9.24188 -9.04209 -8.53898 -8.37346 -8.14829 -7.92196 -5.96429 -4.09823 1.87052 1.98421 3.34117 3.39061 3.40818 4.19717 4.35131 4.45098 4.89655 5.18426 5.35297 5.40461 5.42448 5.47247 5.51725 5.59095 5.62426 5.71672 5.77788 5.90128 5.94515 5.97602 6.14639 6.21654 6.25131 6.44096 6.51349 6.55904 6.65327 6.69539 6.76378 6.94459 7.11585 7.30827 7.56399 7.60352 7.66612 7.91962 8.28121 8.64908 9.05805 9.60726 11.10596 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019545 B = 0.006916 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.272285 B = 4047.507169 C = 4225.479145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.073 3.927 4 C 0.139 3.861 5 C -0.069 4.069 6 C -0.124 4.124 7 C -0.135 4.135 8 C -0.132 4.132 9 C -0.130 4.130 10 C -0.064 4.064 11 C -0.145 4.145 12 C -0.148 4.148 13 C 0.209 3.791 14 H 0.028 0.972 15 C -0.537 4.537 16 H 0.061 0.939 17 C 0.080 3.920 18 N -0.858 5.858 19 Si 0.890 3.110 20 H -0.286 1.286 21 H -0.276 1.276 22 H -0.276 1.276 23 O -0.329 6.329 24 H 0.080 0.920 25 H 0.031 0.969 26 H 0.037 0.963 27 H 0.041 0.959 28 H 0.055 0.945 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.135 0.865 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.828 2.938 11.089 12.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C -0.004 4.004 4 C 0.098 3.902 5 C -0.069 4.069 6 C -0.142 4.142 7 C -0.153 4.153 8 C -0.150 4.150 9 C -0.149 4.149 10 C -0.082 4.082 11 C -0.182 4.182 12 C -0.185 4.185 13 C 0.154 3.846 14 H 0.045 0.955 15 C -0.574 4.574 16 H 0.079 0.921 17 C -0.126 4.126 18 N -0.493 5.493 19 Si 0.717 3.283 20 H -0.212 1.212 21 H -0.202 1.202 22 H -0.202 1.202 23 O -0.248 6.248 24 H 0.098 0.902 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.153 0.847 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.716 2.371 10.991 12.193 hybrid contribution -0.348 0.317 -0.853 0.975 sum -5.064 2.688 10.138 11.647 Atomic orbital electron populations 1.22662 0.82568 1.02107 0.99125 1.88022 1.18139 1.27428 1.95112 1.22846 0.93489 0.84867 0.99204 1.20696 0.90983 0.91178 0.87345 1.20169 0.97751 0.94826 0.94156 1.20977 1.00915 0.99326 0.92994 1.20916 1.02102 0.93991 0.98304 1.21001 1.01696 0.94965 0.97323 1.21155 1.00709 0.99612 0.93380 1.21150 0.94878 0.93233 0.98897 1.23167 1.00513 0.95423 0.99114 1.23353 1.00998 1.01065 0.93114 1.20563 0.89884 0.82121 0.92029 0.95453 1.21025 1.49101 0.96578 0.90695 0.92058 1.25049 0.93790 0.95698 0.98072 1.70027 1.43346 1.00436 1.35522 0.86723 0.78753 0.77108 0.85716 1.21200 1.20178 1.20197 1.88956 1.64312 1.43118 1.28416 0.90178 0.95033 0.94446 0.94051 0.92678 0.86690 0.86976 0.87064 0.86708 0.84714 0.91582 0.90606 0.91736 0.91557 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.19 9.73 -37.79 -0.37 -7.56 16 3 C 0.07 1.35 4.98 37.16 0.18 1.54 16 4 C 0.14 2.84 0.87 -91.05 -0.08 2.76 16 5 C -0.07 -1.34 4.51 -104.62 -0.47 -1.81 16 6 C -0.12 -2.04 8.75 -39.58 -0.35 -2.39 16 7 C -0.14 -2.01 10.05 -39.59 -0.40 -2.41 16 8 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 9 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 10 C -0.06 -1.29 8.81 -39.58 -0.35 -1.64 16 11 C -0.14 -2.56 5.05 -24.79 -0.13 -2.68 16 12 C -0.15 -3.00 6.53 -24.48 -0.16 -3.16 16 13 C 0.21 5.39 3.27 -26.86 -0.09 5.30 16 14 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 15 C -0.54 -15.02 8.81 -34.44 -0.30 -15.32 16 16 H 0.06 1.66 7.77 -52.49 -0.41 1.25 16 17 C 0.08 2.28 5.42 -17.82 -0.10 2.19 16 18 N -0.86 -25.53 12.93 55.43 0.72 -24.82 16 19 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 O -0.33 -8.48 8.92 -37.79 -0.34 -8.82 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.65 8.09 -51.93 -0.42 0.23 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.12 1.64 6.82 -52.48 -0.36 1.28 16 30 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 33 H 0.13 3.12 7.54 -52.49 -0.40 2.73 16 34 H 0.07 0.97 7.79 -51.93 -0.40 0.57 16 35 H 0.08 1.28 6.85 -51.93 -0.36 0.93 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.07 1.33 8.05 -51.93 -0.42 0.91 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 314.84 15.07 4.74 4.74 Total: -1.00 -31.42 314.84 -7.88 -39.30 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.70 Total: 1.75 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -1.91 Total: -21.06 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.72 Total: -24.82 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.70 Total: -16.38 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.42 -7.88 -39.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379774800.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.913 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds