Wall clock time and date at job start Mon Mar 30 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99919 * 2 1 4 4 C 1.53001 * 109.47249 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.82508 * 305.57430 * 4 3 2 6 6 C 1.38237 * 119.99849 * 269.15609 * 5 4 3 7 7 C 1.38236 * 119.99896 * 179.76637 * 6 5 4 8 8 C 1.38228 * 120.00135 * 0.50238 * 7 6 5 9 9 C 1.38245 * 119.99942 * 359.75267 * 8 7 6 10 10 C 1.38232 * 119.99881 * 359.97438 * 9 8 7 11 11 C 1.54374 * 109.83165 * 184.58866 * 4 3 2 12 12 C 1.55307 * 102.25684 * 261.84549 * 11 4 3 13 13 C 1.54948 * 100.94053 * 325.86845 * 12 11 4 14 14 H 1.09002 * 110.38982 * 277.48582 * 13 12 11 15 15 C 1.50694 * 110.30909 * 155.35818 * 13 12 11 16 16 H 1.08000 * 120.00563 * 2.83267 * 15 13 12 17 17 C 1.37885 * 119.99902 * 182.83430 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 O 1.43243 * 109.82593 * 66.45642 * 4 3 2 24 24 H 1.08993 * 109.46958 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47242 * 299.99796 * 1 2 3 26 26 H 1.09007 * 109.46770 * 59.99565 * 1 2 3 27 27 H 1.09001 * 109.46846 * 60.00219 * 3 2 1 28 28 H 1.08994 * 109.47327 * 300.00315 * 3 2 1 29 29 H 1.08007 * 119.99569 * 0.02562 * 6 5 4 30 30 H 1.08004 * 119.99592 * 180.23549 * 7 6 5 31 31 H 1.07998 * 120.00217 * 179.72533 * 8 7 6 32 32 H 1.07994 * 119.99826 * 179.97438 * 9 8 7 33 33 H 1.07997 * 120.00264 * 179.97438 * 10 9 8 34 34 H 1.09000 * 110.84675 * 20.03541 * 11 4 3 35 35 H 1.09006 * 110.84659 * 143.45540 * 11 4 3 36 36 H 1.08991 * 111.12469 * 207.95039 * 12 11 4 37 37 H 1.08998 * 111.12139 * 83.78556 * 12 11 4 38 38 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 6 3.9794 0.3225 1.1541 6 6 4.2764 0.8999 2.3745 7 6 4.6790 0.1084 3.4339 8 6 4.7946 -1.2593 3.2700 9 6 4.5027 -1.8362 2.0481 10 6 4.0947 -1.0453 0.9903 11 6 4.1718 2.5865 0.1168 12 6 4.5139 2.9168 -1.3616 13 6 4.8768 1.5103 -1.9009 14 1 5.9099 1.2643 -1.6552 15 6 4.6663 1.4514 -3.3919 16 1 4.3529 2.3347 -3.9284 17 6 4.8738 0.2696 -4.0713 18 7 5.2560 -0.8060 -3.4181 19 14 4.6122 0.1965 -5.9194 20 1 4.9000 -1.1767 -6.4061 21 1 3.2045 0.5489 -6.2344 22 1 5.5248 1.1591 -6.5870 23 8 3.9778 0.6096 -1.2344 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8465 -0.8899 29 1 4.1898 1.9690 2.5013 30 1 4.9073 0.5591 4.3884 31 1 5.1134 -1.8772 4.0964 32 1 4.5934 -2.9046 1.9199 33 1 3.8670 -1.4959 0.0355 34 1 3.4574 3.3046 0.5194 35 1 5.0732 2.5538 0.7288 36 1 5.3655 3.5939 -1.4259 37 1 3.6486 3.3262 -1.8830 38 1 5.4016 -1.6375 -3.8960 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379774800.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:33 Heat of formation + Delta-G solvation = -82.598387 kcal Electronic energy + Delta-G solvation = -20501.281597 eV Core-core repulsion = 17501.045050 eV Total energy + Delta-G solvation = -3000.236547 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.10950 -39.06321 -38.26256 -34.87355 -33.27596 -32.55166 -31.48764 -30.02810 -28.45926 -26.81864 -25.00261 -23.71883 -23.34728 -21.81389 -20.73541 -18.61191 -18.15057 -17.35286 -16.87803 -16.66768 -16.49218 -16.04034 -15.87399 -15.44262 -14.87631 -14.64023 -14.23411 -13.96161 -13.81576 -13.62893 -13.28368 -13.13309 -12.79302 -12.60779 -12.43711 -12.31244 -12.20727 -12.04975 -11.86632 -11.50544 -11.37126 -10.99965 -10.68263 -10.51677 -9.83583 -9.66796 -9.47897 -8.11943 -6.32961 0.57580 0.66768 1.38729 1.41976 1.49263 2.40858 2.86479 3.02796 3.09490 3.56970 3.75842 3.95473 4.07901 4.21639 4.27421 4.31814 4.38161 4.41771 4.52535 4.56087 4.65269 4.67521 4.76461 4.80641 4.88721 4.89068 4.97293 5.12371 5.13319 5.27400 5.31553 5.57184 5.67678 5.74419 5.78752 5.94522 6.19826 6.25954 6.35024 6.64486 7.12524 7.43298 8.95217 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019545 B = 0.006916 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.272285 B = 4047.507169 C = 4225.479145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.075 3.925 4 C 0.122 3.878 5 C -0.089 4.089 6 C -0.125 4.125 7 C -0.125 4.125 8 C -0.126 4.126 9 C -0.140 4.140 10 C -0.099 4.099 11 C -0.130 4.130 12 C -0.138 4.138 13 C 0.200 3.800 14 H -0.015 1.015 15 C -0.556 4.556 16 H 0.066 0.934 17 C 0.023 3.977 18 N -0.898 5.898 19 Si 0.959 3.041 20 H -0.285 1.285 21 H -0.271 1.271 22 H -0.262 1.262 23 O -0.366 6.366 24 H 0.089 0.911 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.144 0.856 30 H 0.154 0.846 31 H 0.148 0.852 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 4.724 13.342 15.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C -0.001 4.001 4 C 0.082 3.918 5 C -0.089 4.089 6 C -0.142 4.142 7 C -0.143 4.143 8 C -0.144 4.144 9 C -0.158 4.158 10 C -0.117 4.117 11 C -0.168 4.168 12 C -0.176 4.176 13 C 0.145 3.855 14 H 0.003 0.997 15 C -0.593 4.593 16 H 0.084 0.916 17 C -0.179 4.179 18 N -0.535 5.535 19 Si 0.783 3.217 20 H -0.211 1.211 21 H -0.196 1.196 22 H -0.187 1.187 23 O -0.286 6.286 24 H 0.107 0.893 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.161 0.839 30 H 0.172 0.828 31 H 0.166 0.834 32 H 0.142 0.858 33 H 0.102 0.898 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.342 4.176 13.247 14.882 hybrid contribution -0.174 -0.277 -1.449 1.486 sum -5.516 3.899 11.798 13.595 Atomic orbital electron populations 1.22872 0.80348 1.03266 1.00484 1.87995 1.20740 1.28315 1.95371 1.22838 0.92342 0.84766 1.00182 1.21102 0.92420 0.92621 0.85671 1.20193 0.99176 0.94222 0.95295 1.21272 1.00108 1.00956 0.91910 1.21427 0.99755 0.93727 0.99395 1.21413 1.00112 0.95879 0.97015 1.21326 1.00659 1.00083 0.93707 1.20906 0.98258 0.94583 0.97997 1.23151 1.01733 0.94534 0.97347 1.23213 1.01650 0.97894 0.94851 1.20405 0.88101 0.85441 0.91559 0.99743 1.21496 1.48507 0.96760 0.92544 0.91596 1.25954 0.93577 0.95356 1.03048 1.70203 1.45027 1.00946 1.37364 0.85632 0.78952 0.77284 0.79834 1.21075 1.19614 1.18700 1.88869 1.64153 1.44380 1.31165 0.89284 0.92379 0.94211 0.90499 0.93856 0.83864 0.82793 0.83426 0.85757 0.89789 0.87457 0.89694 0.90083 0.91301 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.41 -16.09 9.73 -146.53 -1.43 -17.52 16 3 C 0.08 2.75 4.98 71.98 0.36 3.11 16 4 C 0.12 5.01 0.87 -11.07 -0.01 5.00 16 5 C -0.09 -3.44 4.51 -19.86 -0.09 -3.53 16 6 C -0.12 -3.73 8.75 22.27 0.19 -3.53 16 7 C -0.13 -3.21 10.05 22.27 0.22 -2.98 16 8 C -0.13 -3.45 10.05 22.27 0.22 -3.22 16 9 C -0.14 -4.81 10.05 22.27 0.22 -4.58 16 10 C -0.10 -4.24 8.81 22.27 0.20 -4.04 16 11 C -0.13 -4.35 5.05 31.85 0.16 -4.19 16 12 C -0.14 -5.56 6.53 32.05 0.21 -5.35 16 13 C 0.20 10.79 3.27 30.51 0.10 10.89 16 14 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 15 C -0.56 -32.24 8.81 25.60 0.23 -32.01 16 16 H 0.07 3.63 7.77 -2.91 -0.02 3.61 16 17 C 0.02 1.35 5.42 84.66 0.46 1.81 16 18 N -0.90 -56.59 12.93 21.45 0.28 -56.32 16 19 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 23 O -0.37 -19.92 8.92 -146.53 -1.31 -21.22 16 24 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 26 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.08 2.20 8.09 -2.39 -0.02 2.18 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.14 3.40 6.82 -2.91 -0.02 3.38 16 30 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 32 H 0.12 3.84 8.06 -2.91 -0.02 3.81 16 33 H 0.08 4.35 7.54 -2.91 -0.02 4.33 16 34 H 0.11 2.70 7.79 -2.39 -0.02 2.68 16 35 H 0.08 2.67 6.85 -2.38 -0.02 2.65 16 36 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.07 2.70 8.05 -2.39 -0.02 2.68 16 38 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -74.06 314.84 4.32 -69.74 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 1.03 Total: 18.49 kcal Atomic # 6 Polarization: -44.36 SS G_CDS: 3.72 Total: -40.64 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.28 Total: -56.32 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -2.73 Total: -38.74 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -74.06 4.32 -69.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379774800.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.857 kcal (2) G-P(sol) polarization free energy of solvation -74.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds