Wall clock time and date at job start Mon Mar 30 2020 06:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00358 * 2 1 4 4 C 1.52995 * 109.47622 * 180.02562 * 3 2 1 5 5 C 1.50693 * 109.82314 * 59.29727 * 4 3 2 6 6 C 1.38233 * 120.00207 * 270.56495 * 5 4 3 7 7 C 1.38234 * 120.00037 * 179.72405 * 6 5 4 8 8 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 9 9 C 1.38238 * 119.99693 * 0.02562 * 8 7 6 10 10 C 1.38234 * 120.00063 * 359.97438 * 9 8 7 11 11 C 1.54384 * 109.90540 * 180.23631 * 4 3 2 12 12 C 1.55306 * 102.25438 * 98.19943 * 11 4 3 13 13 C 1.54944 * 100.94121 * 34.13163 * 12 11 4 14 14 H 1.09003 * 110.39510 * 82.51444 * 13 12 11 15 15 C 1.50702 * 110.30683 * 204.64257 * 13 12 11 16 16 H 1.07998 * 120.00096 * 357.16245 * 15 13 12 17 17 C 1.37879 * 120.00080 * 177.16700 * 15 13 12 18 18 N 1.31513 * 119.99862 * 359.97438 * 17 15 13 19 19 Si 1.86794 * 120.00024 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47524 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46921 * 120.00303 * 19 17 15 22 22 H 1.48496 * 109.47340 * 239.99712 * 19 17 15 23 23 O 1.43239 * 109.82868 * 298.41123 * 4 3 2 24 24 H 1.08998 * 109.47293 * 59.99770 * 1 2 3 25 25 H 1.08997 * 109.47021 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46850 * 299.99877 * 1 2 3 27 27 H 1.09003 * 109.46891 * 59.99791 * 3 2 1 28 28 H 1.09010 * 109.47069 * 300.00586 * 3 2 1 29 29 H 1.08002 * 120.00157 * 0.02562 * 6 5 4 30 30 H 1.07999 * 120.00009 * 180.28389 * 7 6 5 31 31 H 1.07997 * 120.00475 * 179.97438 * 8 7 6 32 32 H 1.08002 * 119.99673 * 179.97438 * 9 8 7 33 33 H 1.08000 * 120.00005 * 179.97438 * 10 9 8 34 34 H 1.09007 * 110.84719 * 216.38590 * 11 4 3 35 35 H 1.08995 * 110.84908 * 340.00533 * 11 4 3 36 36 H 1.08996 * 111.12078 * 276.20899 * 12 11 4 37 37 H 1.08996 * 111.16209 * 152.06641 * 12 11 4 38 38 H 0.96999 * 119.99967 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9872 0.4229 -1.2199 6 6 4.1023 -0.9538 -1.1715 7 6 4.5112 -1.6529 -2.2917 8 6 4.8104 -0.9750 -3.4586 9 6 4.7012 0.4023 -3.5052 10 6 4.2922 1.1015 -2.3851 11 6 4.1740 2.5902 0.0053 12 6 4.5076 2.7943 1.5084 13 6 4.8656 1.3468 1.9294 14 1 5.8999 1.1206 1.6700 15 6 4.6460 1.1630 3.4089 16 1 4.3304 1.9986 4.0159 17 6 4.8481 -0.0720 3.9877 18 7 5.2321 -1.0897 3.2484 19 14 4.5766 -0.2997 5.8217 20 1 4.1495 0.9893 6.4227 21 1 3.5222 -1.3219 6.0428 22 1 5.8414 -0.7480 6.4575 23 8 3.9697 0.5069 1.1842 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8679 -1.4836 -0.2600 30 1 4.5967 -2.7289 -2.2553 31 1 5.1303 -1.5212 -4.3337 32 1 4.9353 0.9320 -4.4168 33 1 4.2072 2.1775 -2.4213 34 1 5.0811 2.6068 -0.5990 35 1 3.4630 3.3408 -0.3397 36 1 3.6396 3.1598 2.0571 37 1 5.3594 3.4624 1.6352 38 1 5.3746 -1.9585 3.6557 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379775073.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:35 Heat of formation + Delta-G solvation = -82.646186 kcal Electronic energy + Delta-G solvation = -20502.905760 eV Core-core repulsion = 17502.667141 eV Total energy + Delta-G solvation = -3000.238619 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.10915 -39.06809 -38.25424 -34.87493 -33.27893 -32.55200 -31.49100 -30.02629 -28.45758 -26.82265 -25.00164 -23.71739 -23.34991 -21.81079 -20.73487 -18.61474 -18.14583 -17.37469 -16.85887 -16.66368 -16.49117 -16.03460 -15.87435 -15.44754 -14.88754 -14.63648 -14.23755 -13.97003 -13.82731 -13.62316 -13.29147 -13.11332 -12.85244 -12.61275 -12.39766 -12.30658 -12.19152 -12.02476 -11.86827 -11.50575 -11.37127 -10.99129 -10.70010 -10.51042 -9.82631 -9.67351 -9.48638 -8.12094 -6.32794 0.56866 0.66046 1.38191 1.39671 1.51653 2.40685 2.85783 3.02253 3.10634 3.58911 3.75257 3.95670 4.07619 4.21616 4.27186 4.30624 4.37908 4.41432 4.52276 4.56085 4.64642 4.67690 4.76323 4.80753 4.88543 4.88964 4.97973 5.12503 5.13221 5.27184 5.31250 5.57538 5.67315 5.74340 5.78753 5.94091 6.20000 6.25635 6.35606 6.65123 7.13303 7.43490 8.95473 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.006937 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.561346 B = 4035.076944 C = 4214.765860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.076 3.924 4 C 0.122 3.878 5 C -0.091 4.091 6 C -0.100 4.100 7 C -0.140 4.140 8 C -0.126 4.126 9 C -0.125 4.125 10 C -0.124 4.124 11 C -0.130 4.130 12 C -0.139 4.139 13 C 0.200 3.800 14 H -0.015 1.015 15 C -0.553 4.553 16 H 0.066 0.934 17 C 0.022 3.978 18 N -0.898 5.898 19 Si 0.959 3.041 20 H -0.260 1.260 21 H -0.284 1.284 22 H -0.276 1.276 23 O -0.364 6.364 24 H 0.057 0.943 25 H 0.088 0.912 26 H 0.040 0.960 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.155 0.845 33 H 0.144 0.856 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.361 5.852 -12.989 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C -0.001 4.001 4 C 0.082 3.918 5 C -0.091 4.091 6 C -0.119 4.119 7 C -0.158 4.158 8 C -0.144 4.144 9 C -0.143 4.143 10 C -0.142 4.142 11 C -0.167 4.167 12 C -0.176 4.176 13 C 0.144 3.856 14 H 0.003 0.997 15 C -0.591 4.591 16 H 0.084 0.916 17 C -0.180 4.180 18 N -0.536 5.536 19 Si 0.783 3.217 20 H -0.183 1.183 21 H -0.210 1.210 22 H -0.202 1.202 23 O -0.284 6.284 24 H 0.076 0.924 25 H 0.106 0.894 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.143 0.857 31 H 0.166 0.834 32 H 0.172 0.828 33 H 0.162 0.838 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.267 5.306 -12.925 14.931 hybrid contribution -0.168 -0.419 1.395 1.466 sum -5.434 4.887 -11.530 13.651 Atomic orbital electron populations 1.22870 0.80370 1.03235 1.00495 1.88000 1.20714 1.28332 1.95363 1.22834 0.92321 0.84782 1.00165 1.21105 0.92440 0.92211 0.86064 1.20221 0.99281 0.94148 0.95445 1.20922 0.98316 0.94980 0.97638 1.21329 1.00637 1.00345 0.93446 1.21419 1.00064 0.95131 0.97779 1.21435 0.99719 0.94343 0.98791 1.21277 1.00021 1.00799 0.92112 1.23151 1.01696 0.94815 0.97082 1.23214 1.01655 0.97712 0.95044 1.20417 0.88164 0.86268 0.90746 0.99747 1.21546 1.48214 0.96253 0.93039 0.91632 1.25949 0.93629 0.95819 1.02569 1.70214 1.45211 1.01096 1.37041 0.85523 0.77786 0.78435 0.79934 1.18350 1.21029 1.20168 1.88875 1.64437 1.42077 1.32995 0.92420 0.89376 0.94103 0.93708 0.90628 0.89752 0.85741 0.83405 0.82766 0.83826 0.89692 0.87438 0.91350 0.90090 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.01 16 2 O -0.40 -16.26 9.88 -141.89 -1.40 -17.66 16 3 C 0.08 2.76 4.92 71.98 0.35 3.11 16 4 C 0.12 5.01 0.86 -11.07 -0.01 5.00 16 5 C -0.09 -3.51 4.58 -19.87 -0.09 -3.61 16 6 C -0.10 -4.27 8.91 22.27 0.20 -4.08 16 7 C -0.14 -4.78 10.05 22.27 0.22 -4.56 16 8 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 9 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 10 C -0.12 -3.70 8.75 22.27 0.19 -3.50 16 11 C -0.13 -4.34 5.04 31.86 0.16 -4.18 16 12 C -0.14 -5.58 6.53 32.05 0.21 -5.37 16 13 C 0.20 10.75 3.27 30.51 0.10 10.85 16 14 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 15 C -0.55 -32.13 8.81 25.60 0.23 -31.91 16 16 H 0.07 3.64 7.77 -2.91 -0.02 3.61 16 17 C 0.02 1.32 5.42 84.66 0.46 1.78 16 18 N -0.90 -56.63 12.93 21.45 0.28 -56.36 16 19 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 20 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 O -0.36 -19.82 8.86 -141.89 -1.26 -21.08 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 29 H 0.08 4.37 7.54 -2.91 -0.02 4.34 16 30 H 0.12 3.83 8.06 -2.91 -0.02 3.80 16 31 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 32 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 33 H 0.14 3.38 6.82 -2.91 -0.02 3.36 16 34 H 0.08 2.66 6.86 -2.38 -0.02 2.65 16 35 H 0.11 2.70 7.82 -2.39 -0.02 2.68 16 36 H 0.07 2.69 8.05 -2.39 -0.02 2.67 16 37 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -74.32 315.10 4.39 -69.93 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 1.03 Total: 18.17 kcal Atomic # 6 Polarization: -44.32 SS G_CDS: 3.72 Total: -40.60 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.28 Total: -56.36 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -2.66 Total: -38.74 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -74.32 4.39 -69.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379775073.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.713 kcal (2) G-P(sol) polarization free energy of solvation -74.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds