Wall clock time and date at job start Mon Mar 30 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42897 * 114.00027 * 2 1 4 4 C 1.50694 * 109.47205 * 179.97438 * 3 2 1 5 5 C 1.38239 * 119.99794 * 89.99800 * 4 3 2 6 6 C 1.38233 * 119.99749 * 179.97438 * 5 4 3 7 7 C 1.38241 * 120.00347 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00061 * 180.02562 * 7 6 5 9 9 H 1.09000 * 110.27973 * 24.35812 * 8 7 6 10 10 C 1.54953 * 110.39105 * 262.21375 * 8 7 6 11 11 C 1.55310 * 100.93963 * 204.59715 * 10 8 7 12 12 C 1.54381 * 102.25377 * 34.13484 * 11 10 8 13 13 H 1.08998 * 109.90670 * 98.19827 * 12 11 10 14 14 C 1.50701 * 109.82961 * 219.13113 * 12 11 10 15 15 H 1.08002 * 119.99761 * 359.58109 * 14 12 11 16 16 C 1.37871 * 119.99694 * 179.86672 * 14 12 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12 19 19 H 1.48504 * 109.47266 * 60.00049 * 18 16 14 20 20 H 1.48504 * 109.46970 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47383 * 299.99456 * 18 16 14 22 22 O 1.43244 * 107.58837 * 338.64002 * 12 11 10 23 23 C 1.38236 * 119.99878 * 0.27466 * 7 6 5 24 24 C 1.38236 * 120.00119 * 269.98503 * 4 3 2 25 25 H 1.09000 * 109.46620 * 60.00007 * 1 2 3 26 26 H 1.08997 * 109.46877 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46775 * 299.99931 * 1 2 3 28 28 H 1.09004 * 109.46640 * 60.00054 * 3 2 1 29 29 H 1.08998 * 109.47453 * 300.00150 * 3 2 1 30 30 H 1.07994 * 119.99805 * 359.97438 * 5 4 3 31 31 H 1.07999 * 120.00187 * 180.02562 * 6 5 4 32 32 H 1.08992 * 111.12559 * 322.51458 * 10 8 7 33 33 H 1.09000 * 111.12024 * 86.63880 * 10 8 7 34 34 H 1.08998 * 110.84764 * 275.94296 * 11 10 8 35 35 H 1.08999 * 110.84595 * 152.32535 * 11 10 8 36 36 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 37 37 H 1.07994 * 120.00256 * 179.73015 * 23 7 6 38 38 H 1.08003 * 120.00081 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2020 1.1316 -1.1963 6 6 5.5801 1.0230 -1.1957 7 6 6.2688 0.9698 0.0018 8 6 7.7711 0.8520 0.0023 9 1 8.1811 1.2422 -0.9292 10 6 8.1968 -0.6247 0.2002 11 6 9.6174 -0.4440 0.8014 12 6 9.4576 0.8434 1.6384 13 1 9.2897 0.5874 2.6845 14 6 10.6964 1.6922 1.5123 15 1 11.5232 1.3540 0.9053 16 6 10.7766 2.8976 2.1767 17 7 9.7698 3.3094 2.9159 18 14 12.3153 3.9461 2.0267 19 1 12.5320 4.3063 0.6024 20 1 12.1510 5.1841 2.8303 21 1 13.4858 3.1820 2.5277 22 8 8.3261 1.5559 1.1248 23 6 5.5789 1.0194 1.1986 24 6 4.2011 1.1324 1.1981 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8464 -0.8899 30 1 3.6640 1.1736 -2.1317 31 1 6.1188 0.9806 -2.1307 32 1 7.5354 -1.1336 0.9013 33 1 8.2370 -1.1529 -0.7524 34 1 10.3573 -0.3049 0.0132 35 1 9.8802 -1.2897 1.4368 36 1 9.8264 4.1573 3.3835 37 1 6.1166 0.9734 2.1341 38 1 3.6625 1.1759 2.1332 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380018271.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:25 Heat of formation + Delta-G solvation = -71.454280 kcal Electronic energy + Delta-G solvation = -19254.018165 eV Core-core repulsion = 16254.264863 eV Total energy + Delta-G solvation = -2999.753302 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.48032 -38.14270 -37.20134 -32.91571 -31.89681 -30.89301 -30.53499 -28.69605 -26.93001 -25.51926 -23.88089 -22.39562 -21.55283 -20.22996 -19.87724 -16.64632 -16.49181 -16.34032 -16.11184 -15.51369 -15.20021 -14.51948 -14.28055 -14.04244 -13.73598 -13.07431 -12.95510 -12.63812 -12.38326 -12.17126 -12.09781 -11.76547 -11.69085 -11.09373 -10.87241 -10.75451 -10.59293 -10.42168 -10.34307 -10.13001 -9.82819 -9.81358 -9.19173 -8.55450 -8.51633 -8.30471 -7.79992 -5.95791 -4.09836 1.54935 1.77835 3.33713 3.38549 3.40560 3.67646 4.26126 4.45119 4.88214 4.91860 5.00383 5.15116 5.18689 5.23680 5.34043 5.38423 5.42436 5.46052 5.53156 5.56128 5.80387 5.80957 6.00122 6.21879 6.26139 6.31731 6.35520 6.49856 6.60201 6.69915 6.77644 6.83356 6.88191 7.01441 7.16173 7.34927 7.66236 7.90862 8.30642 8.61189 9.06066 9.61705 11.10706 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035151 B = 0.004105 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.363719 B = 6819.587946 C = 7155.957914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.107 3.893 4 C -0.108 4.108 5 C -0.104 4.104 6 C -0.121 4.121 7 C -0.059 4.059 8 C 0.111 3.889 9 H 0.062 0.938 10 C -0.146 4.146 11 C -0.145 4.145 12 C 0.205 3.795 13 H 0.039 0.961 14 C -0.546 4.546 15 H 0.058 0.942 16 C 0.079 3.921 17 N -0.862 5.862 18 Si 0.889 3.111 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 O -0.349 6.349 23 C -0.092 4.092 24 C -0.102 4.102 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.261 0.739 37 H 0.132 0.868 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.666 -5.466 -6.303 16.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.031 3.969 4 C -0.108 4.108 5 C -0.122 4.122 6 C -0.140 4.140 7 C -0.059 4.059 8 C 0.052 3.948 9 H 0.080 0.920 10 C -0.184 4.184 11 C -0.182 4.182 12 C 0.150 3.850 13 H 0.056 0.944 14 C -0.584 4.584 15 H 0.076 0.924 16 C -0.127 4.127 17 N -0.499 5.499 18 Si 0.716 3.284 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 O -0.269 6.269 23 C -0.110 4.110 24 C -0.120 4.120 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.150 0.850 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.700 -5.292 -6.082 16.765 hybrid contribution 0.682 0.747 -0.189 1.029 sum -14.017 -4.546 -6.271 16.015 Atomic orbital electron populations 1.22738 0.81432 1.02638 0.99835 1.88001 1.19216 1.27879 1.95358 1.21322 0.90398 0.84691 1.00500 1.19432 0.93326 1.04233 0.93850 1.20842 0.94059 1.00316 0.96982 1.20921 0.93907 1.01501 0.97621 1.20211 0.95937 0.96680 0.93079 1.21593 0.88155 0.91570 0.93517 0.92038 1.23241 0.97970 0.96515 1.00645 1.23218 0.95137 0.99843 1.00032 1.20304 0.84986 0.86936 0.92746 0.94350 1.21354 1.00390 1.05562 1.31069 0.92352 1.25050 0.95793 0.97538 0.94278 1.70019 1.30088 1.20727 1.29020 0.86737 0.83586 0.79814 0.78229 1.20170 1.21216 1.20184 1.88810 1.46502 1.47754 1.43823 1.21112 0.93232 0.97685 0.98949 1.21011 0.94384 0.99574 0.97034 0.94219 0.89726 0.94133 0.92625 0.92746 0.86527 0.86178 0.91425 0.91666 0.91530 0.92160 0.92958 0.84972 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.88 10.69 -35.23 -0.38 -5.26 16 3 C 0.11 1.27 6.06 36.00 0.22 1.49 16 4 C -0.11 -1.59 5.51 -104.62 -0.58 -2.16 16 5 C -0.10 -1.50 9.70 -39.58 -0.38 -1.89 16 6 C -0.12 -1.93 9.70 -39.58 -0.38 -2.31 16 7 C -0.06 -1.09 5.04 -104.62 -0.53 -1.62 16 8 C 0.11 2.28 3.64 -26.85 -0.10 2.18 16 9 H 0.06 1.26 8.07 -51.93 -0.42 0.84 16 10 C -0.15 -2.67 6.56 -24.48 -0.16 -2.83 16 11 C -0.14 -2.98 6.53 -24.78 -0.16 -3.14 16 12 C 0.21 5.30 3.36 -27.16 -0.09 5.21 16 13 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 14 C -0.55 -15.38 8.74 -34.44 -0.30 -15.69 16 15 H 0.06 1.59 7.52 -52.49 -0.39 1.20 16 16 C 0.08 2.27 5.41 -17.82 -0.10 2.17 16 17 N -0.86 -25.82 12.92 55.43 0.72 -25.10 16 18 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 O -0.35 -9.05 9.36 -35.23 -0.33 -9.38 16 23 C -0.09 -1.69 9.37 -39.58 -0.37 -2.06 16 24 C -0.10 -1.62 9.70 -39.58 -0.38 -2.00 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 29 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.36 7.66 -51.93 -0.40 0.96 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.13 2.61 7.63 -52.49 -0.40 2.21 16 38 H 0.12 1.64 8.06 -52.48 -0.42 1.21 16 LS Contribution 320.61 15.07 4.83 4.83 Total: -1.00 -31.67 320.61 -8.19 -39.86 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.81 Total: -0.20 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -2.21 Total: -21.29 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.72 Total: -25.10 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.71 Total: -14.64 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.67 -8.19 -39.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380018271.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.594 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds