Wall clock time and date at job start Mon Mar 30 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42897 * 114.00027 * 2 1 4 4 C 1.50694 * 109.47205 * 179.97438 * 3 2 1 5 5 C 1.38239 * 119.99794 * 89.99800 * 4 3 2 6 6 C 1.38233 * 119.99749 * 179.97438 * 5 4 3 7 7 C 1.38241 * 120.00347 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00061 * 180.02562 * 7 6 5 9 9 H 1.09000 * 110.27973 * 24.35812 * 8 7 6 10 10 C 1.54953 * 110.39105 * 262.21375 * 8 7 6 11 11 C 1.55310 * 100.93963 * 204.59715 * 10 8 7 12 12 C 1.54381 * 102.25377 * 34.13484 * 11 10 8 13 13 H 1.08998 * 109.90670 * 98.19827 * 12 11 10 14 14 C 1.50701 * 109.82961 * 219.13113 * 12 11 10 15 15 H 1.08002 * 119.99761 * 359.58109 * 14 12 11 16 16 C 1.37871 * 119.99694 * 179.86672 * 14 12 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12 19 19 H 1.48504 * 109.47266 * 60.00049 * 18 16 14 20 20 H 1.48504 * 109.46970 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47383 * 299.99456 * 18 16 14 22 22 O 1.43244 * 107.58837 * 338.64002 * 12 11 10 23 23 C 1.38236 * 119.99878 * 0.27466 * 7 6 5 24 24 C 1.38236 * 120.00119 * 269.98503 * 4 3 2 25 25 H 1.09000 * 109.46620 * 60.00007 * 1 2 3 26 26 H 1.08997 * 109.46877 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46775 * 299.99931 * 1 2 3 28 28 H 1.09004 * 109.46640 * 60.00054 * 3 2 1 29 29 H 1.08998 * 109.47453 * 300.00150 * 3 2 1 30 30 H 1.07994 * 119.99805 * 359.97438 * 5 4 3 31 31 H 1.07999 * 120.00187 * 180.02562 * 6 5 4 32 32 H 1.08992 * 111.12559 * 322.51458 * 10 8 7 33 33 H 1.09000 * 111.12024 * 86.63880 * 10 8 7 34 34 H 1.08998 * 110.84764 * 275.94296 * 11 10 8 35 35 H 1.08999 * 110.84595 * 152.32535 * 11 10 8 36 36 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 37 37 H 1.07994 * 120.00256 * 179.73015 * 23 7 6 38 38 H 1.08003 * 120.00081 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2020 1.1316 -1.1963 6 6 5.5801 1.0230 -1.1957 7 6 6.2688 0.9698 0.0018 8 6 7.7711 0.8520 0.0023 9 1 8.1811 1.2422 -0.9292 10 6 8.1968 -0.6247 0.2002 11 6 9.6174 -0.4440 0.8014 12 6 9.4576 0.8434 1.6384 13 1 9.2897 0.5874 2.6845 14 6 10.6964 1.6922 1.5123 15 1 11.5232 1.3540 0.9053 16 6 10.7766 2.8976 2.1767 17 7 9.7698 3.3094 2.9159 18 14 12.3153 3.9461 2.0267 19 1 12.5320 4.3063 0.6024 20 1 12.1510 5.1841 2.8303 21 1 13.4858 3.1820 2.5277 22 8 8.3261 1.5559 1.1248 23 6 5.5789 1.0194 1.1986 24 6 4.2011 1.1324 1.1981 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8464 -0.8899 30 1 3.6640 1.1736 -2.1317 31 1 6.1188 0.9806 -2.1307 32 1 7.5354 -1.1336 0.9013 33 1 8.2370 -1.1529 -0.7524 34 1 10.3573 -0.3049 0.0132 35 1 9.8802 -1.2897 1.4368 36 1 9.8264 4.1573 3.3835 37 1 6.1166 0.9734 2.1341 38 1 3.6625 1.1759 2.1332 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380018271.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:24 Heat of formation + Delta-G solvation = -90.497654 kcal Electronic energy + Delta-G solvation = -19254.843947 eV Core-core repulsion = 16254.264863 eV Total energy + Delta-G solvation = -3000.579084 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.83059 -39.54004 -38.32864 -34.83021 -33.42013 -32.60720 -31.80723 -30.23011 -28.10247 -26.78125 -25.41017 -23.67752 -22.99003 -22.02632 -21.31880 -18.61596 -17.80273 -17.35786 -17.25266 -16.77967 -16.63769 -16.28966 -15.67067 -15.28687 -15.16758 -14.61784 -14.29625 -14.13008 -13.83542 -13.66213 -13.52158 -13.10180 -12.77566 -12.68025 -12.42860 -12.35292 -12.18649 -12.03424 -11.88658 -11.71070 -11.51641 -11.09661 -10.66989 -10.62090 -9.93786 -9.80376 -9.45646 -8.11785 -6.34028 0.30346 0.52369 1.39560 1.42537 1.50084 2.41089 2.61478 3.07502 3.22967 3.59234 3.83008 3.89532 3.96672 3.99907 4.15889 4.25094 4.32525 4.43621 4.51862 4.57570 4.59008 4.64899 4.67734 4.76232 4.85501 4.89102 4.94950 5.06664 5.08542 5.18367 5.23802 5.49361 5.58940 5.64013 5.74918 5.82703 6.08717 6.19336 6.24403 6.60422 7.04920 7.43110 8.94806 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035151 B = 0.004105 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.363719 B = 6819.587946 C = 7155.957914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.108 3.892 4 C -0.107 4.107 5 C -0.099 4.099 6 C -0.121 4.121 7 C -0.082 4.082 8 C 0.102 3.898 9 H 0.061 0.939 10 C -0.131 4.131 11 C -0.136 4.136 12 C 0.197 3.803 13 H 0.001 0.999 14 C -0.566 4.566 15 H 0.063 0.937 16 C 0.022 3.978 17 N -0.903 5.903 18 Si 0.960 3.040 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.264 1.264 22 O -0.383 6.383 23 C -0.116 4.116 24 C -0.107 4.107 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.151 0.849 31 H 0.142 0.858 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.260 0.740 37 H 0.101 0.899 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.852 -5.810 -8.436 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.333 6.333 3 C 0.032 3.968 4 C -0.107 4.107 5 C -0.116 4.116 6 C -0.139 4.139 7 C -0.082 4.082 8 C 0.044 3.956 9 H 0.079 0.921 10 C -0.168 4.168 11 C -0.174 4.174 12 C 0.142 3.858 13 H 0.019 0.981 14 C -0.603 4.603 15 H 0.081 0.919 16 C -0.180 4.180 17 N -0.540 5.540 18 Si 0.784 3.216 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.189 1.189 22 O -0.304 6.304 23 C -0.134 4.134 24 C -0.125 4.125 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.169 0.831 31 H 0.160 0.840 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.889 -5.655 -8.225 18.764 hybrid contribution 0.916 0.820 0.457 1.312 sum -14.973 -4.835 -7.769 17.547 Atomic orbital electron populations 1.22950 0.79323 1.03806 1.01090 1.87944 1.21530 1.28157 1.95633 1.21353 0.88276 0.84944 1.02213 1.19837 0.95288 1.02306 0.93265 1.21244 0.93535 0.98531 0.98336 1.21157 0.94790 1.00690 0.97254 1.20124 0.94713 0.99114 0.94282 1.21804 0.89650 0.92555 0.91609 0.92145 1.23175 0.96020 0.95416 1.02199 1.23096 0.96889 0.97749 0.99656 1.20196 0.84572 0.89093 0.91962 0.98146 1.21808 1.01491 1.06128 1.30888 0.91897 1.25960 0.99091 0.99039 0.93907 1.70182 1.32399 1.21168 1.30250 0.85617 0.79683 0.77923 0.78380 1.19490 1.20948 1.18871 1.88720 1.46650 1.49239 1.45745 1.20977 0.94506 1.00013 0.97923 1.21173 0.93350 0.99371 0.98634 0.92645 0.88722 0.93159 0.91562 0.90443 0.83141 0.84019 0.91233 0.88142 0.91125 0.90512 0.93115 0.88075 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -9.34 10.69 -148.98 -1.59 -10.93 16 3 C 0.11 2.24 6.06 71.23 0.43 2.67 16 4 C -0.11 -2.91 5.51 -19.87 -0.11 -3.02 16 5 C -0.10 -2.57 9.70 22.27 0.22 -2.35 16 6 C -0.12 -3.63 9.70 22.27 0.22 -3.41 16 7 C -0.08 -3.07 5.04 -19.87 -0.10 -3.17 16 8 C 0.10 4.27 3.64 30.51 0.11 4.38 16 9 H 0.06 2.49 8.07 -2.39 -0.02 2.47 16 10 C -0.13 -4.68 6.56 32.06 0.21 -4.47 16 11 C -0.14 -5.62 6.53 31.86 0.21 -5.42 16 12 C 0.20 10.62 3.36 30.32 0.10 10.72 16 13 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 14 C -0.57 -32.70 8.74 25.60 0.22 -32.47 16 15 H 0.06 3.47 7.52 -2.91 -0.02 3.44 16 16 C 0.02 1.28 5.41 84.65 0.46 1.74 16 17 N -0.90 -56.24 12.92 21.45 0.28 -55.96 16 18 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 22 O -0.38 -20.83 9.36 -148.98 -1.39 -22.22 16 23 C -0.12 -4.44 9.37 22.27 0.21 -4.23 16 24 C -0.11 -3.39 9.70 22.27 0.22 -3.18 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 29 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 30 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.07 2.45 8.05 -2.39 -0.02 2.43 16 33 H 0.10 2.89 8.14 -2.39 -0.02 2.88 16 34 H 0.07 2.83 7.66 -2.39 -0.02 2.82 16 35 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.10 4.39 7.63 -2.91 -0.02 4.37 16 38 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -71.13 320.61 3.98 -67.15 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 1.02 Total: 15.58 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 3.64 Total: -40.63 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.28 Total: -55.96 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -2.99 Total: -33.15 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -71.13 3.98 -67.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380018271.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.345 kcal (2) G-P(sol) polarization free energy of solvation -71.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds