Wall clock time and date at job start Mon Mar 30 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47174 * 2 1 4 4 C 1.35904 * 117.00272 * 179.97438 * 3 2 1 5 5 C 1.38755 * 120.05047 * 359.97438 * 4 3 2 6 6 C 1.38123 * 119.94018 * 180.02562 * 5 4 3 7 7 C 1.38285 * 120.05603 * 359.97438 * 6 5 4 8 8 C 1.38248 * 120.11214 * 359.78539 * 7 6 5 9 9 C 1.38163 * 120.05416 * 0.46814 * 8 7 6 10 10 C 1.50705 * 120.02791 * 179.78886 * 9 8 7 11 11 H 1.08997 * 109.81964 * 215.60793 * 10 9 8 12 12 C 1.54384 * 109.82909 * 94.72033 * 10 9 8 13 13 C 1.55303 * 102.25033 * 219.03840 * 12 10 9 14 14 C 1.54938 * 100.94190 * 34.13762 * 13 12 10 15 15 H 1.09005 * 110.31399 * 82.56704 * 14 13 12 16 16 C 1.50706 * 110.30980 * 204.63762 * 14 13 12 17 17 H 1.08005 * 119.99758 * 358.60954 * 16 14 13 18 18 C 1.37871 * 120.00102 * 178.60839 * 16 14 13 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47483 * 269.99808 * 20 18 16 22 22 H 1.48499 * 109.47134 * 30.00322 * 20 18 16 23 23 H 1.48507 * 109.46904 * 150.00145 * 20 18 16 24 24 O 1.43380 * 109.82440 * 336.56486 * 10 9 8 25 25 H 1.09004 * 109.47119 * 60.00272 * 1 2 3 26 26 H 1.08997 * 109.47290 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47306 * 300.00381 * 1 2 3 28 28 H 1.09002 * 109.47504 * 240.00017 * 2 1 3 29 29 H 1.09004 * 109.47119 * 119.99728 * 2 1 3 30 30 H 1.07999 * 120.03140 * 0.05116 * 5 4 3 31 31 H 1.07998 * 119.97172 * 180.02562 * 6 5 4 32 32 H 1.08005 * 119.94617 * 180.02562 * 7 6 5 33 33 H 1.08004 * 119.97254 * 180.23275 * 8 7 6 34 34 H 1.08999 * 110.84397 * 100.84617 * 12 10 9 35 35 H 1.08995 * 111.02260 * 337.31274 * 12 10 9 36 36 H 1.09000 * 111.12727 * 276.21368 * 13 12 10 37 37 H 1.09001 * 111.15799 * 152.06862 * 13 12 10 38 38 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4258 0.0016 6 6 5.5689 0.6095 0.0027 7 6 6.0962 1.8878 0.0022 8 6 5.2551 2.9850 -0.0039 9 6 3.8850 2.8067 0.0003 10 6 2.9687 4.0031 -0.0015 11 1 2.0837 3.7918 0.5986 12 6 2.5517 4.3412 -1.4490 13 6 2.5717 5.8941 -1.4436 14 6 3.7467 6.1696 -0.4720 15 1 4.6981 6.1012 -0.9997 16 6 3.5961 7.5301 0.1585 17 1 2.7632 8.1619 -0.1130 18 6 4.5214 7.9683 1.0819 19 7 5.5358 7.1992 1.4122 20 14 4.3349 9.6549 1.8629 21 1 5.0484 10.6636 1.0390 22 1 2.8946 10.0081 1.9403 23 1 4.9136 9.6339 3.2304 24 8 3.6570 5.1435 0.5291 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7886 -0.5728 0.0012 31 1 6.2280 -0.2460 0.0031 32 1 7.1669 2.0294 0.0026 33 1 5.6694 3.9824 -0.0081 34 1 1.5503 3.9668 -1.6616 35 1 3.2717 3.9464 -2.1657 36 1 1.6370 6.2977 -1.0542 37 1 2.7832 6.2883 -2.4376 38 1 5.6328 6.3235 1.0064 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383275433.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:20 Heat of formation + Delta-G solvation = -72.902037 kcal Electronic energy + Delta-G solvation = -19992.391129 eV Core-core repulsion = 16992.575048 eV Total energy + Delta-G solvation = -2999.816081 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.15657 -38.29046 -37.01431 -32.99310 -32.03792 -31.04383 -30.91004 -29.43197 -27.41360 -24.44462 -23.83482 -22.12053 -21.42415 -20.57703 -20.05823 -17.97770 -17.01373 -16.14736 -16.05864 -15.61960 -14.94371 -14.23056 -14.11541 -13.68906 -13.57251 -13.36716 -13.26479 -12.93508 -12.68006 -12.20706 -11.94210 -11.70984 -11.50597 -11.23005 -10.99968 -10.75719 -10.72755 -10.64870 -10.43171 -10.36325 -10.06347 -9.84342 -8.85102 -8.53563 -8.44266 -8.01698 -7.79874 -6.32046 -4.09341 1.62675 1.71615 3.30092 3.46208 3.51315 3.66903 4.04088 4.56627 4.81175 4.83157 4.87647 5.08429 5.10572 5.18790 5.35998 5.37135 5.49616 5.56009 5.58088 5.66552 5.69471 5.76071 5.91406 6.09076 6.13294 6.21353 6.28405 6.39046 6.52941 6.62107 6.62898 6.74935 6.79072 7.00873 7.13702 7.38517 7.61894 8.13014 8.37026 8.61338 8.92676 9.73137 11.09709 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024504 B = 0.005597 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.399488 B = 5001.331929 C = 5648.673364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.312 6.312 4 C 0.127 3.873 5 C -0.216 4.216 6 C -0.093 4.093 7 C -0.159 4.159 8 C -0.056 4.056 9 C -0.112 4.112 10 C 0.123 3.877 11 H 0.074 0.926 12 C -0.141 4.141 13 C -0.139 4.139 14 C 0.191 3.809 15 H 0.019 0.981 16 C -0.608 4.608 17 H 0.055 0.945 18 C 0.032 3.968 19 N -0.892 5.892 20 Si 1.072 2.928 21 H -0.288 1.288 22 H -0.288 1.288 23 H -0.284 1.284 24 O -0.368 6.368 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.138 0.862 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.080 -14.901 -4.529 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.226 6.226 4 C 0.082 3.918 5 C -0.235 4.235 6 C -0.111 4.111 7 C -0.177 4.177 8 C -0.074 4.074 9 C -0.113 4.113 10 C 0.064 3.936 11 H 0.092 0.908 12 C -0.179 4.179 13 C -0.177 4.177 14 C 0.136 3.864 15 H 0.037 0.963 16 C -0.645 4.645 17 H 0.074 0.926 18 C -0.176 4.176 19 N -0.526 5.526 20 Si 0.900 3.100 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.209 1.209 24 O -0.288 6.288 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.156 0.844 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.469 -13.710 -3.251 14.782 hybrid contribution -0.698 -1.543 -1.297 2.133 sum -5.167 -15.252 -4.548 16.734 Atomic orbital electron populations 1.21763 0.92959 1.02490 1.03666 1.22713 0.95723 0.82602 1.00999 1.86097 1.19233 1.28462 1.88783 1.18755 0.82014 0.93457 0.97532 1.21070 0.94438 0.97354 1.10602 1.20832 0.94154 0.97103 0.99027 1.21085 0.99845 0.92401 1.04344 1.21057 0.91834 0.99861 0.94651 1.19886 0.95062 0.92411 1.03978 1.21200 0.92660 0.85703 0.94023 0.90848 1.23041 1.00928 0.97471 0.96437 1.23207 1.01274 0.92974 1.00215 1.20712 0.92123 0.87551 0.86016 0.96302 1.22018 1.13832 0.98964 1.29701 0.92644 1.25849 0.92688 1.04503 0.94602 1.70656 1.29190 1.11689 1.41093 0.83528 0.75526 0.74333 0.76633 1.21435 1.21459 1.20948 1.88826 1.76831 1.23708 1.39386 0.91532 0.90675 0.91442 0.92399 0.92356 0.86065 0.86371 0.86113 0.84430 0.91463 0.91855 0.91402 0.91924 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.97 16 2 C 0.06 0.60 5.46 37.16 0.20 0.81 16 3 O -0.31 -4.87 9.30 -19.44 -0.18 -5.05 16 4 C 0.13 2.16 6.66 -39.22 -0.26 1.90 16 5 C -0.22 -3.12 9.04 -39.43 -0.36 -3.47 16 6 C -0.09 -1.31 10.04 -39.61 -0.40 -1.71 16 7 C -0.16 -2.54 10.04 -39.56 -0.40 -2.93 16 8 C -0.06 -1.08 9.36 -39.61 -0.37 -1.45 16 9 C -0.11 -2.20 4.95 -104.47 -0.52 -2.71 16 10 C 0.12 2.64 3.46 -27.16 -0.09 2.55 16 11 H 0.07 1.59 7.74 -51.93 -0.40 1.19 16 12 C -0.14 -2.71 6.53 -24.78 -0.16 -2.88 16 13 C -0.14 -3.00 6.53 -24.49 -0.16 -3.16 16 14 C 0.19 4.99 2.80 -26.86 -0.08 4.92 16 15 H 0.02 0.53 8.00 -51.93 -0.42 0.11 16 16 C -0.61 -17.58 8.80 -34.44 -0.30 -17.88 16 17 H 0.06 1.57 7.76 -52.48 -0.41 1.17 16 18 C 0.03 0.93 5.42 -17.82 -0.10 0.83 16 19 N -0.89 -27.54 13.57 55.43 0.75 -26.78 16 20 Si 1.07 25.62 29.90 -169.99 -5.08 20.54 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 O -0.37 -9.63 8.49 -35.23 -0.30 -9.93 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 29 H 0.06 0.58 7.66 -51.93 -0.40 0.19 16 30 H 0.12 1.39 6.30 -52.49 -0.33 1.06 16 31 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 32 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 33 H 0.14 2.95 7.33 -52.48 -0.38 2.57 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 1.17 7.85 -51.93 -0.41 0.76 16 36 H 0.07 1.47 8.04 -51.93 -0.42 1.06 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.28 8.62 6.61 -40.82 -0.27 8.35 16 LS Contribution 313.72 15.07 4.73 4.73 Total: -1.00 -32.36 313.72 -8.27 -40.64 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.59 Total: 2.03 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: -2.61 Total: -26.17 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 0.75 Total: -26.78 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.48 Total: -14.98 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.36 -8.27 -40.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383275433.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.263 kcal (2) G-P(sol) polarization free energy of solvation -32.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds