Wall clock time and date at job start Mon Mar 30 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47174 * 2 1 4 4 C 1.35904 * 117.00272 * 179.97438 * 3 2 1 5 5 C 1.38755 * 120.05047 * 359.97438 * 4 3 2 6 6 C 1.38123 * 119.94018 * 180.02562 * 5 4 3 7 7 C 1.38285 * 120.05603 * 359.97438 * 6 5 4 8 8 C 1.38248 * 120.11214 * 359.78539 * 7 6 5 9 9 C 1.38163 * 120.05416 * 0.46814 * 8 7 6 10 10 C 1.50705 * 120.02791 * 179.78886 * 9 8 7 11 11 H 1.08997 * 109.81964 * 215.60793 * 10 9 8 12 12 C 1.54384 * 109.82909 * 94.72033 * 10 9 8 13 13 C 1.55303 * 102.25033 * 219.03840 * 12 10 9 14 14 C 1.54938 * 100.94190 * 34.13762 * 13 12 10 15 15 H 1.09005 * 110.31399 * 82.56704 * 14 13 12 16 16 C 1.50706 * 110.30980 * 204.63762 * 14 13 12 17 17 H 1.08005 * 119.99758 * 358.60954 * 16 14 13 18 18 C 1.37871 * 120.00102 * 178.60839 * 16 14 13 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47483 * 269.99808 * 20 18 16 22 22 H 1.48499 * 109.47134 * 30.00322 * 20 18 16 23 23 H 1.48507 * 109.46904 * 150.00145 * 20 18 16 24 24 O 1.43380 * 109.82440 * 336.56486 * 10 9 8 25 25 H 1.09004 * 109.47119 * 60.00272 * 1 2 3 26 26 H 1.08997 * 109.47290 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47306 * 300.00381 * 1 2 3 28 28 H 1.09002 * 109.47504 * 240.00017 * 2 1 3 29 29 H 1.09004 * 109.47119 * 119.99728 * 2 1 3 30 30 H 1.07999 * 120.03140 * 0.05116 * 5 4 3 31 31 H 1.07998 * 119.97172 * 180.02562 * 6 5 4 32 32 H 1.08005 * 119.94617 * 180.02562 * 7 6 5 33 33 H 1.08004 * 119.97254 * 180.23275 * 8 7 6 34 34 H 1.08999 * 110.84397 * 100.84617 * 12 10 9 35 35 H 1.08995 * 111.02260 * 337.31274 * 12 10 9 36 36 H 1.09000 * 111.12727 * 276.21368 * 13 12 10 37 37 H 1.09001 * 111.15799 * 152.06862 * 13 12 10 38 38 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4258 0.0016 6 6 5.5689 0.6095 0.0027 7 6 6.0962 1.8878 0.0022 8 6 5.2551 2.9850 -0.0039 9 6 3.8850 2.8067 0.0003 10 6 2.9687 4.0031 -0.0015 11 1 2.0837 3.7918 0.5986 12 6 2.5517 4.3412 -1.4490 13 6 2.5717 5.8941 -1.4436 14 6 3.7467 6.1696 -0.4720 15 1 4.6981 6.1012 -0.9997 16 6 3.5961 7.5301 0.1585 17 1 2.7632 8.1619 -0.1130 18 6 4.5214 7.9683 1.0819 19 7 5.5358 7.1992 1.4122 20 14 4.3349 9.6549 1.8629 21 1 5.0484 10.6636 1.0390 22 1 2.8946 10.0081 1.9403 23 1 4.9136 9.6339 3.2304 24 8 3.6570 5.1435 0.5291 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7886 -0.5728 0.0012 31 1 6.2280 -0.2460 0.0031 32 1 7.1669 2.0294 0.0026 33 1 5.6694 3.9824 -0.0081 34 1 1.5503 3.9668 -1.6616 35 1 3.2717 3.9464 -2.1657 36 1 1.6370 6.2977 -1.0542 37 1 2.7832 6.2883 -2.4376 38 1 5.6328 6.3235 1.0064 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383275433.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:19 Heat of formation + Delta-G solvation = -92.140951 kcal Electronic energy + Delta-G solvation = -19993.225391 eV Core-core repulsion = 16992.575048 eV Total energy + Delta-G solvation = -3000.650343 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.45318 -39.94121 -38.28582 -35.04962 -33.25878 -32.75375 -32.24804 -30.68488 -29.16216 -26.31678 -24.90891 -23.70428 -22.62230 -22.41073 -21.56984 -19.21400 -19.09232 -17.64082 -17.05283 -17.00405 -16.44312 -15.92972 -15.59855 -15.44675 -15.32862 -14.78530 -14.47177 -14.26454 -13.84428 -13.45418 -13.38011 -13.13599 -12.83250 -12.62243 -12.53830 -12.46132 -12.36940 -12.19097 -11.93093 -11.83573 -11.63838 -11.53187 -10.83723 -10.65494 -10.11489 -9.75281 -9.10372 -8.65213 -6.43645 0.33837 0.45319 1.51914 1.62370 1.79833 2.26516 2.56732 2.73643 3.06927 3.50423 3.67632 3.77159 3.91149 4.05567 4.07032 4.09139 4.21000 4.26986 4.37192 4.39007 4.42514 4.54877 4.65980 4.70543 4.80584 4.93048 4.94421 4.97216 5.02594 5.04772 5.20324 5.30852 5.39959 5.51530 5.64830 5.86372 5.95980 6.09881 6.48225 6.52921 6.69863 7.49890 8.75854 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024504 B = 0.005597 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.399488 B = 5001.331929 C = 5648.673364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 O -0.332 6.332 4 C 0.126 3.874 5 C -0.207 4.207 6 C -0.078 4.078 7 C -0.164 4.164 8 C -0.083 4.083 9 C -0.144 4.144 10 C 0.117 3.883 11 H 0.065 0.935 12 C -0.124 4.124 13 C -0.132 4.132 14 C 0.185 3.815 15 H -0.009 1.009 16 C -0.628 4.628 17 H 0.056 0.944 18 C -0.022 4.022 19 N -0.919 5.919 20 Si 1.121 2.879 21 H -0.267 1.267 22 H -0.271 1.271 23 H -0.285 1.285 24 O -0.398 6.398 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.137 0.863 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 -17.215 -5.027 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.247 6.247 4 C 0.080 3.920 5 C -0.225 4.225 6 C -0.096 4.096 7 C -0.182 4.182 8 C -0.101 4.101 9 C -0.144 4.144 10 C 0.059 3.941 11 H 0.082 0.918 12 C -0.162 4.162 13 C -0.170 4.170 14 C 0.130 3.870 15 H 0.008 0.992 16 C -0.665 4.665 17 H 0.074 0.926 18 C -0.223 4.223 19 N -0.555 5.555 20 Si 0.942 3.058 21 H -0.192 1.192 22 H -0.196 1.196 23 H -0.210 1.210 24 O -0.318 6.318 25 H 0.080 0.920 26 H 0.123 0.877 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.178 0.822 31 H 0.180 0.820 32 H 0.155 0.845 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.423 -16.046 -3.773 17.352 hybrid contribution -0.455 -0.983 -1.156 1.585 sum -5.878 -17.029 -4.929 18.677 Atomic orbital electron populations 1.21808 0.91661 1.04223 1.02932 1.23111 0.96823 0.80681 1.02468 1.86082 1.18459 1.31572 1.88542 1.18767 0.83157 0.92963 0.97078 1.21509 0.94299 0.98212 1.08476 1.21305 0.94778 0.97263 0.96267 1.21296 1.00377 0.92471 1.04084 1.20855 0.92629 0.99245 0.97397 1.19710 0.94753 0.92933 1.07051 1.21317 0.92615 0.85263 0.94923 0.91752 1.22951 1.02495 0.95473 0.95236 1.23108 0.99079 0.94973 0.99793 1.20590 0.92680 0.87047 0.86715 0.99166 1.22446 1.13745 1.00568 1.29725 0.92561 1.27444 0.91993 1.07812 0.95052 1.70773 1.30691 1.11599 1.42401 0.82911 0.76680 0.70348 0.75847 1.19223 1.19585 1.21025 1.88726 1.77653 1.25349 1.40119 0.91991 0.87667 0.92479 0.90508 0.91072 0.82229 0.82045 0.84473 0.88507 0.88785 0.91230 0.91543 0.90169 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 10.28 71.98 0.74 -1.53 16 2 C 0.04 0.82 5.46 71.98 0.39 1.21 16 3 O -0.33 -9.83 9.30 -92.47 -0.86 -10.69 16 4 C 0.13 4.10 6.66 22.51 0.15 4.25 16 5 C -0.21 -5.24 9.04 22.37 0.20 -5.04 16 6 C -0.08 -1.94 10.04 22.25 0.22 -1.72 16 7 C -0.16 -5.15 10.04 22.28 0.22 -4.93 16 8 C -0.08 -3.36 9.36 22.25 0.21 -3.15 16 9 C -0.14 -5.75 4.95 -19.77 -0.10 -5.85 16 10 C 0.12 5.23 3.46 30.32 0.10 5.33 16 11 H 0.06 2.91 7.74 -2.39 -0.02 2.89 16 12 C -0.12 -4.79 6.53 31.86 0.21 -4.59 16 13 C -0.13 -5.79 6.53 32.05 0.21 -5.58 16 14 C 0.18 10.19 2.80 30.51 0.09 10.27 16 15 H -0.01 -0.54 8.00 -2.38 -0.02 -0.56 16 16 C -0.63 -37.59 8.80 25.60 0.23 -37.37 16 17 H 0.06 3.26 7.76 -2.91 -0.02 3.24 16 18 C -0.02 -1.31 5.42 84.65 0.46 -0.86 16 19 N -0.92 -59.46 13.57 21.45 0.29 -59.17 16 20 Si 1.12 52.25 29.90 68.60 2.05 54.30 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 24 O -0.40 -22.17 8.49 -148.98 -1.26 -23.43 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.08 1.16 7.66 -2.39 -0.02 1.14 16 29 H 0.07 1.16 7.66 -2.39 -0.02 1.14 16 30 H 0.16 2.79 6.30 -2.91 -0.02 2.77 16 31 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 33 H 0.10 4.63 7.33 -2.91 -0.02 4.61 16 34 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.07 2.58 7.85 -2.39 -0.02 2.57 16 36 H 0.07 2.90 8.04 -2.39 -0.02 2.89 16 37 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.26 17.50 6.61 -92.71 -0.61 16.88 16 Total: -1.00 -74.56 313.72 4.74 -69.82 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 1.19 Total: 18.72 kcal Atomic # 6 Polarization: -52.89 SS G_CDS: 3.33 Total: -49.55 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.29 Total: -59.17 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -2.12 Total: -34.12 kcal Atomic # 14 Polarization: 52.25 SS G_CDS: 2.05 Total: 54.30 kcal Total: -74.56 4.74 -69.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383275433.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.324 kcal (2) G-P(sol) polarization free energy of solvation -74.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds