Wall clock time and date at job start Mon Mar 30 2020 06:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32152 * 119.99835 * 2 1 4 4 C 1.32117 * 120.00254 * 179.97438 * 3 2 1 5 5 C 1.38397 * 119.99651 * 0.02562 * 4 3 2 6 6 N 1.32124 * 119.99386 * 0.02562 * 5 4 3 7 7 C 1.32155 * 120.00257 * 359.73085 * 6 5 4 8 8 C 1.50703 * 119.99989 * 180.27200 * 7 6 5 9 9 C 1.52994 * 109.87213 * 244.23870 * 8 7 6 10 10 C 1.54106 * 109.87794 * 5.24868 * 8 7 6 11 11 C 1.54809 * 104.18582 * 121.45138 * 10 8 7 12 12 C 1.54997 * 102.09489 * 20.87701 * 11 10 8 13 13 C 1.53003 * 110.61202 * 81.47675 * 12 11 10 14 14 C 1.50696 * 110.62046 * 204.31596 * 12 11 10 15 15 H 1.08003 * 120.00006 * 0.02562 * 14 12 11 16 16 C 1.37877 * 119.99998 * 179.97438 * 14 12 11 17 17 N 1.31508 * 120.00332 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 119.99700 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47215 * 60.00613 * 18 16 14 20 20 H 1.48503 * 109.46980 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47514 * 300.00131 * 18 16 14 22 22 O 1.43745 * 109.87338 * 123.07551 * 8 7 6 23 23 H 1.09004 * 109.47476 * 89.99713 * 1 2 3 24 24 H 1.09000 * 109.47319 * 209.99618 * 1 2 3 25 25 H 1.09004 * 109.47524 * 330.00022 * 1 2 3 26 26 H 1.08002 * 120.00677 * 180.02562 * 4 3 2 27 27 H 1.07995 * 120.00297 * 180.02562 * 5 4 3 28 28 H 1.09003 * 109.47380 * 52.44775 * 9 8 7 29 29 H 1.09001 * 109.47031 * 172.44821 * 9 8 7 30 30 H 1.09005 * 109.47580 * 292.44856 * 9 8 7 31 31 H 1.09000 * 110.48398 * 240.12749 * 10 8 7 32 32 H 1.09002 * 110.48453 * 2.77742 * 10 8 7 33 33 H 1.08996 * 110.90881 * 139.08023 * 11 10 8 34 34 H 1.09000 * 110.90555 * 262.64592 * 11 10 8 35 35 H 1.08999 * 109.47213 * 74.88087 * 13 12 11 36 36 H 1.09004 * 109.46938 * 194.87348 * 13 12 11 37 37 H 1.08993 * 109.47571 * 314.87760 * 13 12 11 38 38 H 0.96992 * 120.00299 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4889 1.1446 0.0005 5 6 4.1809 -0.0540 0.0005 6 7 3.5202 -1.1981 -0.0005 7 6 2.1987 -1.1981 0.0038 8 6 1.4451 -2.5032 0.0089 9 6 0.6392 -2.6434 -1.2840 10 6 2.4333 -3.6783 0.1405 11 6 1.9814 -4.4118 1.4267 12 6 0.5151 -3.9322 1.5759 13 6 -0.4126 -4.7463 0.6717 14 6 0.0697 -4.0258 3.0125 15 1 0.7516 -4.3901 3.7667 16 6 -1.2081 -3.6454 3.3643 17 7 -2.0383 -3.2014 2.4461 18 14 -1.7599 -3.7609 5.1452 19 1 -0.8862 -2.9079 5.9905 20 1 -3.1657 -3.2961 5.2589 21 1 -1.6667 -5.1708 5.6020 22 8 0.5656 -2.5552 1.1447 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 4.0290 2.0799 0.0009 27 1 5.2609 -0.0540 0.0013 28 1 1.2959 -2.4882 -2.1402 29 1 0.2053 -3.6420 -1.3352 30 1 -0.1577 -1.8998 -1.2980 31 1 2.3568 -4.3395 -0.7227 32 1 3.4529 -3.3088 0.2502 33 1 2.0255 -5.4927 1.2940 34 1 2.5815 -4.1020 2.2823 35 1 -0.5626 -5.7364 1.1023 36 1 -1.3732 -4.2384 0.5852 37 1 0.0370 -4.8442 -0.3163 38 1 -2.9372 -2.9342 2.6935 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383289000.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:03 Heat of formation + Delta-G solvation = 9.118234 kcal Electronic energy + Delta-G solvation = -20982.954845 eV Core-core repulsion = 18018.988181 eV Total energy + Delta-G solvation = -2963.966664 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.01811 -38.73387 -34.28626 -33.88400 -32.27216 -31.11970 -29.86591 -28.34003 -27.45449 -25.26709 -24.38100 -22.95249 -22.22704 -19.75604 -19.45429 -17.18968 -16.78335 -16.10771 -15.49636 -14.81486 -14.65240 -14.22098 -13.98447 -13.67496 -13.21759 -12.66024 -12.49753 -12.26295 -11.99183 -11.81334 -11.74819 -11.37644 -11.17468 -10.94325 -10.83327 -10.71604 -10.62091 -10.52480 -10.25692 -10.09428 -9.83769 -9.50453 -9.04489 -8.64441 -8.62128 -8.54300 -8.17432 -6.02595 -4.16425 1.09336 1.45657 3.30201 3.34939 3.38125 3.94132 4.24275 4.39094 4.47408 4.80216 4.97302 5.08717 5.35772 5.48497 5.59429 5.64545 5.68381 5.74274 5.97325 6.04386 6.12808 6.18925 6.30050 6.39151 6.46741 6.55025 6.69388 6.72537 6.84139 6.89741 7.01306 7.05868 7.18564 7.27218 7.62907 7.74527 8.06074 8.12856 8.31792 8.53701 8.92973 9.53482 11.00434 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023087 B = 0.007376 C = 0.006793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.514210 B = 3794.964671 C = 4120.705386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.109 3.891 3 N -0.448 5.448 4 C 0.038 3.962 5 C 0.031 3.969 6 N -0.430 5.430 7 C 0.106 3.894 8 C 0.147 3.853 9 C -0.169 4.169 10 C -0.145 4.145 11 C -0.140 4.140 12 C 0.231 3.769 13 C -0.149 4.149 14 C -0.519 4.519 15 H 0.062 0.938 16 C 0.082 3.918 17 N -0.861 5.861 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 O -0.335 6.335 23 H 0.072 0.928 24 H 0.126 0.874 25 H 0.069 0.931 26 H 0.162 0.838 27 H 0.163 0.837 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.039 0.961 36 H 0.086 0.914 37 H 0.019 0.981 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.129 3.727 -6.939 10.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.031 4.031 3 N -0.164 5.164 4 C -0.122 4.122 5 C -0.128 4.128 6 N -0.145 5.145 7 C -0.035 4.035 8 C 0.105 3.895 9 C -0.227 4.227 10 C -0.182 4.182 11 C -0.178 4.178 12 C 0.195 3.805 13 C -0.206 4.206 14 C -0.556 4.556 15 H 0.080 0.920 16 C -0.124 4.124 17 N -0.497 5.497 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 O -0.255 6.255 23 H 0.091 0.909 24 H 0.144 0.856 25 H 0.088 0.912 26 H 0.180 0.820 27 H 0.181 0.819 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.037 0.963 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.826 3.976 -6.878 10.474 hybrid contribution 0.076 0.047 0.876 0.880 sum 6.902 4.022 -6.002 9.992 Atomic orbital electron populations 1.21155 0.87143 1.06413 1.02747 1.22189 0.98910 0.88441 0.93562 1.68310 1.08744 1.29657 1.09693 1.23633 0.91116 0.99491 0.97955 1.23646 1.01485 0.89037 0.98677 1.68151 1.08522 1.29364 1.08508 1.22186 0.90004 0.96665 0.94692 1.20448 0.89860 0.88581 0.90637 1.22649 1.00261 1.04273 0.95500 1.22956 1.00476 0.96134 0.98678 1.23158 0.99782 0.98943 0.95949 1.20082 0.88508 0.78205 0.93742 1.22290 1.02818 0.99783 0.95727 1.20867 0.97571 1.45142 0.92035 0.91999 1.24997 0.96520 0.93716 0.97161 1.69936 1.06237 1.41032 1.32496 0.86705 0.77676 0.78497 0.85370 1.20210 1.21154 1.20153 1.89228 1.62815 1.31112 1.42310 0.90911 0.85623 0.91175 0.82034 0.81950 0.93593 0.90202 0.91251 0.92081 0.89586 0.92187 0.92133 0.94167 0.89487 0.96262 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 8.39 36.01 0.30 -1.81 16 2 C 0.11 2.06 6.66 -82.42 -0.55 1.51 16 3 N -0.45 -7.81 10.42 -9.29 -0.10 -7.91 16 4 C 0.04 0.53 11.23 -17.37 -0.19 0.34 16 5 C 0.03 0.44 11.23 -17.37 -0.19 0.24 16 6 N -0.43 -7.66 8.41 -9.29 -0.08 -7.74 16 7 C 0.11 2.05 5.81 -82.42 -0.48 1.57 16 8 C 0.15 2.93 0.64 -91.20 -0.06 2.87 16 9 C -0.17 -2.98 7.91 37.15 0.29 -2.69 16 10 C -0.14 -2.75 5.70 -25.20 -0.14 -2.90 16 11 C -0.14 -2.98 6.03 -24.72 -0.15 -3.13 16 12 C 0.23 5.58 0.75 -90.72 -0.07 5.52 16 13 C -0.15 -3.39 7.55 37.16 0.28 -3.11 16 14 C -0.52 -13.99 8.32 -34.44 -0.29 -14.27 16 15 H 0.06 1.66 7.77 -52.48 -0.41 1.25 16 16 C 0.08 2.19 5.29 -17.82 -0.09 2.10 16 17 N -0.86 -23.38 11.20 55.43 0.62 -22.76 16 18 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 O -0.34 -8.05 7.73 -35.23 -0.27 -8.33 16 23 H 0.07 1.14 7.27 -51.93 -0.38 0.76 16 24 H 0.13 2.66 4.88 -51.93 -0.25 2.41 16 25 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 27 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 29 H 0.08 1.41 5.04 -51.93 -0.26 1.15 16 30 H 0.07 1.20 5.29 -51.93 -0.27 0.92 16 31 H 0.06 1.05 7.69 -51.93 -0.40 0.65 16 32 H 0.09 1.61 6.26 -51.93 -0.33 1.29 16 33 H 0.06 1.17 8.05 -51.93 -0.42 0.76 16 34 H 0.06 1.33 8.05 -51.93 -0.42 0.91 16 35 H 0.04 0.91 8.11 -51.93 -0.42 0.49 16 36 H 0.09 2.17 6.42 -51.93 -0.33 1.83 16 37 H 0.02 0.38 5.06 -51.93 -0.26 0.12 16 38 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 294.74 15.07 4.44 4.44 Total: -1.00 -29.34 294.74 -6.73 -36.06 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.98 Total: 4.16 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -1.34 Total: -13.77 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.45 Total: -38.41 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.27 Total: -8.33 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.34 -6.73 -36.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383289000.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.181 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds