Wall clock time and date at job start Mon Mar 30 2020 06:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32152 * 119.99835 * 2 1 4 4 C 1.32117 * 120.00254 * 179.97438 * 3 2 1 5 5 C 1.38397 * 119.99651 * 0.02562 * 4 3 2 6 6 N 1.32124 * 119.99386 * 0.02562 * 5 4 3 7 7 C 1.32155 * 120.00257 * 359.73085 * 6 5 4 8 8 C 1.50703 * 119.99989 * 180.27200 * 7 6 5 9 9 C 1.52994 * 109.87213 * 244.23870 * 8 7 6 10 10 C 1.54106 * 109.87794 * 5.24868 * 8 7 6 11 11 C 1.54809 * 104.18582 * 121.45138 * 10 8 7 12 12 C 1.54997 * 102.09489 * 20.87701 * 11 10 8 13 13 C 1.53003 * 110.61202 * 81.47675 * 12 11 10 14 14 C 1.50696 * 110.62046 * 204.31596 * 12 11 10 15 15 H 1.08003 * 120.00006 * 0.02562 * 14 12 11 16 16 C 1.37877 * 119.99998 * 179.97438 * 14 12 11 17 17 N 1.31508 * 120.00332 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 119.99700 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47215 * 60.00613 * 18 16 14 20 20 H 1.48503 * 109.46980 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47514 * 300.00131 * 18 16 14 22 22 O 1.43745 * 109.87338 * 123.07551 * 8 7 6 23 23 H 1.09004 * 109.47476 * 89.99713 * 1 2 3 24 24 H 1.09000 * 109.47319 * 209.99618 * 1 2 3 25 25 H 1.09004 * 109.47524 * 330.00022 * 1 2 3 26 26 H 1.08002 * 120.00677 * 180.02562 * 4 3 2 27 27 H 1.07995 * 120.00297 * 180.02562 * 5 4 3 28 28 H 1.09003 * 109.47380 * 52.44775 * 9 8 7 29 29 H 1.09001 * 109.47031 * 172.44821 * 9 8 7 30 30 H 1.09005 * 109.47580 * 292.44856 * 9 8 7 31 31 H 1.09000 * 110.48398 * 240.12749 * 10 8 7 32 32 H 1.09002 * 110.48453 * 2.77742 * 10 8 7 33 33 H 1.08996 * 110.90881 * 139.08023 * 11 10 8 34 34 H 1.09000 * 110.90555 * 262.64592 * 11 10 8 35 35 H 1.08999 * 109.47213 * 74.88087 * 13 12 11 36 36 H 1.09004 * 109.46938 * 194.87348 * 13 12 11 37 37 H 1.08993 * 109.47571 * 314.87760 * 13 12 11 38 38 H 0.96992 * 120.00299 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4889 1.1446 0.0005 5 6 4.1809 -0.0540 0.0005 6 7 3.5202 -1.1981 -0.0005 7 6 2.1987 -1.1981 0.0038 8 6 1.4451 -2.5032 0.0089 9 6 0.6392 -2.6434 -1.2840 10 6 2.4333 -3.6783 0.1405 11 6 1.9814 -4.4118 1.4267 12 6 0.5151 -3.9322 1.5759 13 6 -0.4126 -4.7463 0.6717 14 6 0.0697 -4.0258 3.0125 15 1 0.7516 -4.3901 3.7667 16 6 -1.2081 -3.6454 3.3643 17 7 -2.0383 -3.2014 2.4461 18 14 -1.7599 -3.7609 5.1452 19 1 -0.8862 -2.9079 5.9905 20 1 -3.1657 -3.2961 5.2589 21 1 -1.6667 -5.1708 5.6020 22 8 0.5656 -2.5552 1.1447 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 4.0290 2.0799 0.0009 27 1 5.2609 -0.0540 0.0013 28 1 1.2959 -2.4882 -2.1402 29 1 0.2053 -3.6420 -1.3352 30 1 -0.1577 -1.8998 -1.2980 31 1 2.3568 -4.3395 -0.7227 32 1 3.4529 -3.3088 0.2502 33 1 2.0255 -5.4927 1.2940 34 1 2.5815 -4.1020 2.2823 35 1 -0.5626 -5.7364 1.1023 36 1 -1.3732 -4.2384 0.5852 37 1 0.0370 -4.8442 -0.3163 38 1 -2.9372 -2.9342 2.6935 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383289000.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:02 Heat of formation + Delta-G solvation = -9.017822 kcal Electronic energy + Delta-G solvation = -20983.741283 eV Core-core repulsion = 18018.988181 eV Total energy + Delta-G solvation = -2964.753103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.32399 -40.32922 -35.69121 -35.42569 -33.99780 -32.79540 -31.42198 -29.87984 -28.87726 -27.22525 -25.71336 -24.50936 -23.57276 -21.33760 -21.13409 -18.60981 -18.46302 -17.60199 -16.82983 -16.48428 -16.17583 -15.83542 -15.38139 -15.24668 -14.86813 -14.31696 -13.84464 -13.75781 -13.66922 -13.28544 -13.26723 -12.88185 -12.81347 -12.63871 -12.53126 -12.43472 -12.26597 -11.98493 -11.90484 -11.87991 -11.44717 -11.15820 -10.85880 -10.52910 -10.00999 -9.92543 -9.85917 -8.04076 -6.24539 -0.14490 0.19266 1.41955 1.43316 1.49952 2.43414 2.66430 2.94316 3.19197 3.27669 3.54461 3.79126 3.83149 4.09551 4.12598 4.32869 4.38454 4.44820 4.50852 4.59481 4.67002 4.73320 4.80646 4.87977 4.91316 5.03426 5.09098 5.19523 5.25544 5.32686 5.37561 5.50204 5.55341 5.63599 5.70110 6.16850 6.36314 6.39464 6.66199 6.87968 7.03608 7.48066 8.96971 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023087 B = 0.007376 C = 0.006793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.514210 B = 3794.964671 C = 4120.705386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.086 3.914 3 N -0.466 5.466 4 C 0.048 3.952 5 C 0.039 3.961 6 N -0.447 5.447 7 C 0.078 3.922 8 C 0.141 3.859 9 C -0.163 4.163 10 C -0.135 4.135 11 C -0.137 4.137 12 C 0.219 3.781 13 C -0.136 4.136 14 C -0.546 4.546 15 H 0.051 0.949 16 C 0.040 3.960 17 N -0.879 5.879 18 Si 0.944 3.056 19 H -0.281 1.281 20 H -0.281 1.281 21 H -0.269 1.269 22 O -0.361 6.361 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.210 0.790 27 H 0.210 0.790 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.032 0.968 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.001 4.565 -7.736 12.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.052 4.052 3 N -0.182 5.182 4 C -0.112 4.112 5 C -0.122 4.122 6 N -0.163 5.163 7 C -0.061 4.061 8 C 0.099 3.901 9 C -0.220 4.220 10 C -0.173 4.173 11 C -0.175 4.175 12 C 0.182 3.818 13 C -0.193 4.193 14 C -0.583 4.583 15 H 0.069 0.931 16 C -0.163 4.163 17 N -0.516 5.516 18 Si 0.770 3.230 19 H -0.207 1.207 20 H -0.206 1.206 21 H -0.194 1.194 22 O -0.281 6.281 23 H 0.108 0.892 24 H 0.110 0.890 25 H 0.088 0.912 26 H 0.226 0.774 27 H 0.226 0.774 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.664 4.786 -7.680 12.528 hybrid contribution -0.335 -0.091 1.103 1.156 sum 8.328 4.695 -6.577 11.604 Atomic orbital electron populations 1.20969 0.87664 1.04583 1.03353 1.22136 0.98967 0.89004 0.95099 1.68329 1.10539 1.29034 1.10304 1.24463 0.90078 1.01557 0.95128 1.24461 1.03507 0.88016 0.96194 1.68126 1.07863 1.31279 1.09025 1.22016 0.90830 0.96261 0.96996 1.20610 0.89768 0.89667 0.90040 1.22563 1.00320 1.03860 0.95272 1.22915 1.00395 0.95888 0.98076 1.23069 0.97870 0.99938 0.96637 1.20108 0.90161 0.78883 0.92633 1.22116 1.01577 0.98683 0.96954 1.21208 0.97876 1.45551 0.93684 0.93098 1.25622 0.96659 0.93602 1.00447 1.70052 1.06253 1.41518 1.33751 0.85857 0.77210 0.78599 0.81341 1.20682 1.20603 1.19359 1.89167 1.64111 1.30562 1.44221 0.89216 0.88959 0.91230 0.77360 0.77363 0.91532 0.90583 0.91603 0.90068 0.89169 0.90842 0.93755 0.94928 0.91961 0.93595 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.97 8.39 71.24 0.60 -3.37 16 2 C 0.09 3.19 6.66 42.53 0.28 3.48 16 3 N -0.47 -15.32 10.42 -183.29 -1.91 -17.23 16 4 C 0.05 1.19 11.23 84.69 0.95 2.14 16 5 C 0.04 0.95 11.23 84.69 0.95 1.90 16 6 N -0.45 -14.91 8.41 -183.29 -1.54 -16.45 16 7 C 0.08 2.95 5.81 42.53 0.25 3.20 16 8 C 0.14 5.56 0.64 -11.17 -0.01 5.55 16 9 C -0.16 -5.61 7.91 71.98 0.57 -5.04 16 10 C -0.14 -4.98 5.70 31.59 0.18 -4.80 16 11 C -0.14 -5.81 6.03 31.89 0.19 -5.62 16 12 C 0.22 10.76 0.75 -10.86 -0.01 10.75 16 13 C -0.14 -6.27 7.55 71.98 0.54 -5.73 16 14 C -0.55 -30.20 8.32 25.60 0.21 -29.98 16 15 H 0.05 2.82 7.77 -2.91 -0.02 2.80 16 16 C 0.04 2.21 5.29 84.66 0.45 2.65 16 17 N -0.88 -49.05 11.20 21.45 0.24 -48.81 16 18 Si 0.94 43.54 29.54 68.60 2.03 45.57 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 22 O -0.36 -17.72 7.73 -148.98 -1.15 -18.87 16 23 H 0.09 2.84 7.27 -2.38 -0.02 2.82 16 24 H 0.09 4.07 4.88 -2.39 -0.01 4.06 16 25 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 26 H 0.21 2.99 8.06 -2.91 -0.02 2.96 16 27 H 0.21 3.06 8.06 -2.91 -0.02 3.04 16 28 H 0.07 1.97 8.13 -2.39 -0.02 1.96 16 29 H 0.08 2.62 5.04 -2.39 -0.01 2.60 16 30 H 0.07 2.28 5.29 -2.38 -0.01 2.27 16 31 H 0.08 2.62 7.69 -2.39 -0.02 2.60 16 32 H 0.09 3.25 6.26 -2.39 -0.01 3.23 16 33 H 0.07 2.83 8.05 -2.39 -0.02 2.81 16 34 H 0.04 1.97 8.05 -2.39 -0.02 1.95 16 35 H 0.03 1.49 8.11 -2.39 -0.02 1.47 16 36 H 0.06 3.18 6.42 -2.38 -0.02 3.16 16 37 H 0.05 1.81 5.06 -2.39 -0.01 1.80 16 38 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -64.92 294.74 3.89 -61.02 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 1.07 Total: 19.65 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 5.16 Total: -24.87 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -3.21 Total: -82.50 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -1.15 Total: -18.87 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -64.92 3.89 -61.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383289000.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.004 kcal (2) G-P(sol) polarization free energy of solvation -64.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds