Wall clock time and date at job start Mon Mar 30 2020 06:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32154 * 120.00311 * 2 1 4 4 C 1.32119 * 119.99939 * 180.27533 * 3 2 1 5 5 C 1.38391 * 120.00065 * 359.73660 * 4 3 2 6 6 N 1.32124 * 119.99686 * 359.97438 * 5 4 3 7 7 C 1.32156 * 120.00166 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00252 * 179.97438 * 7 6 5 9 9 C 1.53002 * 110.27558 * 33.28683 * 8 7 6 10 10 C 1.54956 * 110.30581 * 271.19908 * 8 7 6 11 11 C 1.55309 * 100.93789 * 204.54018 * 10 8 7 12 12 C 1.54387 * 102.25486 * 34.13240 * 11 10 8 13 13 C 1.52995 * 109.82707 * 98.24736 * 12 11 10 14 14 C 1.50697 * 109.82879 * 219.12992 * 12 11 10 15 15 H 1.07999 * 120.00076 * 0.02562 * 14 12 11 16 16 C 1.37877 * 119.99634 * 180.02562 * 14 12 11 17 17 N 1.31513 * 120.00126 * 359.72356 * 16 14 12 18 18 Si 1.86804 * 119.99775 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47032 * 359.97438 * 18 16 14 20 20 H 1.48489 * 109.47051 * 119.99883 * 18 16 14 21 21 H 1.48507 * 109.46797 * 240.00005 * 18 16 14 22 22 O 1.43234 * 107.58825 * 338.64341 * 12 11 10 23 23 H 1.09003 * 109.46976 * 263.50456 * 1 2 3 24 24 H 1.08999 * 109.46646 * 23.50429 * 1 2 3 25 25 H 1.09001 * 109.47383 * 143.50222 * 1 2 3 26 26 H 1.07999 * 120.00262 * 179.70727 * 4 3 2 27 27 H 1.08002 * 120.00525 * 180.02562 * 5 4 3 28 28 H 1.08999 * 109.47004 * 297.90952 * 9 8 7 29 29 H 1.08996 * 109.46685 * 57.91295 * 9 8 7 30 30 H 1.09005 * 109.47056 * 177.91420 * 9 8 7 31 31 H 1.08999 * 111.12488 * 86.62181 * 10 8 7 32 32 H 1.08999 * 111.12366 * 322.45454 * 10 8 7 33 33 H 1.09002 * 110.84482 * 275.93998 * 11 10 8 34 34 H 1.08995 * 110.84675 * 152.32465 * 11 10 8 35 35 H 1.09002 * 109.46626 * 180.18713 * 13 12 11 36 36 H 1.09004 * 109.47507 * 300.18088 * 13 12 11 37 37 H 1.08997 * 109.47606 * 60.18796 * 13 12 11 38 38 H 0.96999 * 120.00032 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1679 1.1445 0.0000 4 6 3.4890 1.1444 -0.0055 5 6 4.1809 -0.0542 -0.0057 6 7 3.5202 -1.1983 0.0000 7 6 2.1987 -1.1982 0.0055 8 6 1.4450 -2.5032 0.0115 9 6 2.2221 -3.5606 0.7983 10 6 1.1964 -2.9872 -1.4393 11 6 -0.0565 -3.8831 -1.2405 12 6 -0.8117 -3.1451 -0.1142 13 6 -1.9167 -2.2737 -0.7147 14 6 -1.4115 -4.1455 0.8400 15 1 -1.2739 -5.2032 0.6704 16 6 -2.1358 -3.7104 1.9295 17 7 -2.2986 -2.4223 2.1391 18 14 -2.8798 -4.9505 3.1120 19 1 -2.5502 -6.3258 2.6590 20 1 -2.3266 -4.7309 4.4723 21 1 -4.3548 -4.7805 3.1440 22 8 0.1366 -2.3231 0.5763 23 1 -0.3633 -0.1163 1.0211 24 1 -0.3632 0.9424 -0.4099 25 1 -0.3634 -0.8261 -0.6112 26 1 4.0291 2.0796 -0.0103 27 1 5.2609 -0.0543 -0.0098 28 1 3.1818 -3.7413 0.3141 29 1 2.3893 -3.2065 1.8155 30 1 1.6488 -4.4873 0.8257 31 1 2.0406 -3.5690 -1.8095 32 1 0.9789 -2.1490 -2.1013 33 1 0.2300 -4.8858 -0.9231 34 1 -0.6558 -3.9195 -2.1502 35 1 -2.4436 -1.7530 0.0849 36 1 -1.4755 -1.5444 -1.3941 37 1 -2.6182 -2.9028 -1.2626 38 1 -2.8085 -2.1163 2.9054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383289003.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:05 Heat of formation + Delta-G solvation = 12.408700 kcal Electronic energy + Delta-G solvation = -21140.816512 eV Core-core repulsion = 18176.992533 eV Total energy + Delta-G solvation = -2963.823979 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.96601 -38.80516 -34.40310 -33.53921 -32.07075 -31.25279 -30.60677 -27.51602 -27.18133 -25.46316 -24.71440 -22.79357 -22.19392 -19.90925 -19.36475 -17.25101 -16.53814 -16.25190 -15.50063 -14.86935 -14.68768 -14.45368 -13.93423 -13.47327 -12.74515 -12.38541 -12.31540 -12.17547 -12.04832 -11.81813 -11.66605 -11.56664 -11.12541 -10.97382 -10.81969 -10.66295 -10.61749 -10.53785 -10.36102 -10.14359 -9.92845 -9.58036 -9.16039 -8.68771 -8.54410 -8.47701 -7.79365 -5.98617 -4.13711 1.14418 1.50165 3.27988 3.37466 3.39877 3.99390 4.24229 4.40666 4.53624 4.84557 4.97707 5.15065 5.37466 5.39922 5.51850 5.59129 5.69100 5.80869 5.99655 6.15191 6.19750 6.40175 6.42778 6.49591 6.53048 6.59144 6.62747 6.72415 6.74630 6.80461 6.98484 7.06432 7.27672 7.36823 7.67937 7.76479 8.03614 8.18679 8.31455 8.54501 8.98261 9.57467 11.03138 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027173 B = 0.007147 C = 0.006872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.188171 B = 3916.780371 C = 4073.253707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.114 3.886 3 N -0.451 5.451 4 C 0.038 3.962 5 C 0.025 3.975 6 N -0.432 5.432 7 C 0.095 3.905 8 C 0.154 3.846 9 C -0.138 4.138 10 C -0.140 4.140 11 C -0.139 4.139 12 C 0.227 3.773 13 C -0.146 4.146 14 C -0.530 4.530 15 H 0.059 0.941 16 C 0.083 3.917 17 N -0.859 5.859 18 Si 0.886 3.114 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 O -0.333 6.333 23 H 0.101 0.899 24 H 0.048 0.952 25 H 0.116 0.884 26 H 0.161 0.839 27 H 0.162 0.838 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.020 0.980 37 H 0.037 0.963 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.083 3.141 -5.516 10.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.026 4.026 3 N -0.167 5.167 4 C -0.122 4.122 5 C -0.134 4.134 6 N -0.147 5.147 7 C -0.047 4.047 8 C 0.112 3.888 9 C -0.195 4.195 10 C -0.178 4.178 11 C -0.177 4.177 12 C 0.190 3.810 13 C -0.203 4.203 14 C -0.567 4.567 15 H 0.077 0.923 16 C -0.122 4.122 17 N -0.495 5.495 18 Si 0.713 3.287 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 O -0.252 6.252 23 H 0.119 0.881 24 H 0.067 0.933 25 H 0.133 0.867 26 H 0.178 0.822 27 H 0.179 0.821 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.038 0.962 37 H 0.056 0.944 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.944 3.418 -5.215 10.099 hybrid contribution -0.035 -0.584 0.659 0.881 sum 7.909 2.834 -4.556 9.557 Atomic orbital electron populations 1.21474 0.85951 1.02743 1.06343 1.22470 0.99520 0.88139 0.92438 1.68382 1.08578 1.29770 1.09980 1.23641 0.91269 0.99426 0.97849 1.23571 1.01341 0.89024 0.99468 1.68107 1.08386 1.29636 1.08533 1.22203 0.90001 0.96722 0.95743 1.20598 0.87299 0.87913 0.92967 1.21942 0.99015 0.98810 0.99770 1.23210 0.99267 0.99639 0.95674 1.23245 0.95204 0.99343 0.99910 1.19681 0.85634 0.87609 0.88103 1.22212 0.99291 0.98787 1.00025 1.21263 1.33167 0.92123 1.10189 0.92272 1.24953 0.95095 0.94928 0.97234 1.69911 1.38820 1.12824 1.27986 0.86662 0.78832 0.81878 0.81280 1.19822 1.21045 1.21036 1.88897 1.12613 1.65646 1.58073 0.88082 0.93275 0.86656 0.82178 0.82066 0.92489 0.93004 0.91323 0.91166 0.91892 0.91289 0.91876 0.88678 0.96162 0.94355 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 8.22 36.01 0.30 -1.85 16 2 C 0.11 2.23 6.76 -82.41 -0.56 1.67 16 3 N -0.45 -8.10 10.42 -9.29 -0.10 -8.19 16 4 C 0.04 0.54 11.23 -17.37 -0.20 0.35 16 5 C 0.03 0.36 11.23 -17.37 -0.19 0.17 16 6 N -0.43 -7.58 9.58 -9.28 -0.09 -7.67 16 7 C 0.09 1.84 5.67 -82.41 -0.47 1.37 16 8 C 0.15 3.09 0.86 -90.74 -0.08 3.01 16 9 C -0.14 -2.66 8.41 37.16 0.31 -2.34 16 10 C -0.14 -2.51 5.78 -24.47 -0.14 -2.65 16 11 C -0.14 -2.70 5.69 -24.78 -0.14 -2.84 16 12 C 0.23 5.17 0.70 -91.05 -0.06 5.10 16 13 C -0.15 -3.21 7.42 37.16 0.28 -2.94 16 14 C -0.53 -13.59 8.22 -34.44 -0.28 -13.87 16 15 H 0.06 1.52 7.52 -52.49 -0.39 1.12 16 16 C 0.08 2.18 5.26 -17.82 -0.09 2.09 16 17 N -0.86 -23.05 10.92 55.43 0.61 -22.45 16 18 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 O -0.33 -7.70 6.07 -35.23 -0.21 -7.91 16 23 H 0.10 2.26 7.69 -51.93 -0.40 1.86 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.12 2.35 2.19 -51.93 -0.11 2.23 16 26 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 27 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.06 0.98 7.90 -51.93 -0.41 0.57 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.36 7.53 -51.93 -0.39 0.97 16 31 H 0.07 1.14 8.03 -51.93 -0.42 0.72 16 32 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 33 H 0.07 1.34 7.33 -51.93 -0.38 0.96 16 34 H 0.06 1.12 7.82 -51.93 -0.41 0.72 16 35 H 0.09 2.33 6.02 -51.93 -0.31 2.02 16 36 H 0.02 0.40 6.13 -51.93 -0.32 0.08 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 298.34 15.07 4.50 4.50 Total: -1.00 -28.25 298.34 -6.86 -35.11 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.21 Total: 3.86 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -1.33 Total: -12.74 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.42 Total: -38.31 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.21 Total: -7.91 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.25 -6.86 -35.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383289003.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.517 kcal (2) G-P(sol) polarization free energy of solvation -28.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds