Wall clock time and date at job start Mon Mar 30 2020 06:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32154 * 120.00311 * 2 1 4 4 C 1.32119 * 119.99939 * 180.27533 * 3 2 1 5 5 C 1.38391 * 120.00065 * 359.73660 * 4 3 2 6 6 N 1.32124 * 119.99686 * 359.97438 * 5 4 3 7 7 C 1.32156 * 120.00166 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00252 * 179.97438 * 7 6 5 9 9 C 1.53002 * 110.27558 * 33.28683 * 8 7 6 10 10 C 1.54956 * 110.30581 * 271.19908 * 8 7 6 11 11 C 1.55309 * 100.93789 * 204.54018 * 10 8 7 12 12 C 1.54387 * 102.25486 * 34.13240 * 11 10 8 13 13 C 1.52995 * 109.82707 * 98.24736 * 12 11 10 14 14 C 1.50697 * 109.82879 * 219.12992 * 12 11 10 15 15 H 1.07999 * 120.00076 * 0.02562 * 14 12 11 16 16 C 1.37877 * 119.99634 * 180.02562 * 14 12 11 17 17 N 1.31513 * 120.00126 * 359.72356 * 16 14 12 18 18 Si 1.86804 * 119.99775 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47032 * 359.97438 * 18 16 14 20 20 H 1.48489 * 109.47051 * 119.99883 * 18 16 14 21 21 H 1.48507 * 109.46797 * 240.00005 * 18 16 14 22 22 O 1.43234 * 107.58825 * 338.64341 * 12 11 10 23 23 H 1.09003 * 109.46976 * 263.50456 * 1 2 3 24 24 H 1.08999 * 109.46646 * 23.50429 * 1 2 3 25 25 H 1.09001 * 109.47383 * 143.50222 * 1 2 3 26 26 H 1.07999 * 120.00262 * 179.70727 * 4 3 2 27 27 H 1.08002 * 120.00525 * 180.02562 * 5 4 3 28 28 H 1.08999 * 109.47004 * 297.90952 * 9 8 7 29 29 H 1.08996 * 109.46685 * 57.91295 * 9 8 7 30 30 H 1.09005 * 109.47056 * 177.91420 * 9 8 7 31 31 H 1.08999 * 111.12488 * 86.62181 * 10 8 7 32 32 H 1.08999 * 111.12366 * 322.45454 * 10 8 7 33 33 H 1.09002 * 110.84482 * 275.93998 * 11 10 8 34 34 H 1.08995 * 110.84675 * 152.32465 * 11 10 8 35 35 H 1.09002 * 109.46626 * 180.18713 * 13 12 11 36 36 H 1.09004 * 109.47507 * 300.18088 * 13 12 11 37 37 H 1.08997 * 109.47606 * 60.18796 * 13 12 11 38 38 H 0.96999 * 120.00032 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1679 1.1445 0.0000 4 6 3.4890 1.1444 -0.0055 5 6 4.1809 -0.0542 -0.0057 6 7 3.5202 -1.1983 0.0000 7 6 2.1987 -1.1982 0.0055 8 6 1.4450 -2.5032 0.0115 9 6 2.2221 -3.5606 0.7983 10 6 1.1964 -2.9872 -1.4393 11 6 -0.0565 -3.8831 -1.2405 12 6 -0.8117 -3.1451 -0.1142 13 6 -1.9167 -2.2737 -0.7147 14 6 -1.4115 -4.1455 0.8400 15 1 -1.2739 -5.2032 0.6704 16 6 -2.1358 -3.7104 1.9295 17 7 -2.2986 -2.4223 2.1391 18 14 -2.8798 -4.9505 3.1120 19 1 -2.5502 -6.3258 2.6590 20 1 -2.3266 -4.7309 4.4723 21 1 -4.3548 -4.7805 3.1440 22 8 0.1366 -2.3231 0.5763 23 1 -0.3633 -0.1163 1.0211 24 1 -0.3632 0.9424 -0.4099 25 1 -0.3634 -0.8261 -0.6112 26 1 4.0291 2.0796 -0.0103 27 1 5.2609 -0.0543 -0.0098 28 1 3.1818 -3.7413 0.3141 29 1 2.3893 -3.2065 1.8155 30 1 1.6488 -4.4873 0.8257 31 1 2.0406 -3.5690 -1.8095 32 1 0.9789 -2.1490 -2.1013 33 1 0.2300 -4.8858 -0.9231 34 1 -0.6558 -3.9195 -2.1502 35 1 -2.4436 -1.7530 0.0849 36 1 -1.4755 -1.5444 -1.3941 37 1 -2.6182 -2.9028 -1.2626 38 1 -2.8085 -2.1163 2.9054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383289003.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:04 Heat of formation + Delta-G solvation = -4.543226 kcal Electronic energy + Delta-G solvation = -21141.551603 eV Core-core repulsion = 18176.992533 eV Total energy + Delta-G solvation = -2964.559070 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.30109 -40.35868 -35.83555 -35.15396 -33.66016 -32.84522 -32.25069 -29.10162 -28.62910 -27.26640 -26.21066 -24.31111 -23.53405 -21.44746 -21.04048 -18.57917 -18.40148 -17.59422 -16.74520 -16.67272 -16.17675 -16.00890 -15.48751 -14.95398 -14.34317 -14.12016 -13.82132 -13.76186 -13.52254 -13.38467 -13.27528 -13.09341 -12.82792 -12.58343 -12.43387 -12.26037 -12.17295 -12.12629 -11.98779 -11.93480 -11.53637 -11.18853 -10.88789 -10.49739 -10.05443 -9.84661 -9.46380 -7.95556 -6.15930 -0.11816 0.21342 1.41325 1.45949 1.53922 2.47624 2.69157 2.91190 3.24794 3.34507 3.55984 3.73311 3.81478 3.98970 4.12718 4.30331 4.37891 4.48410 4.59382 4.64040 4.66327 4.86434 4.90463 4.94323 4.99448 5.03523 5.10748 5.14832 5.16951 5.33235 5.36266 5.50670 5.59450 5.75805 5.77761 6.20112 6.39681 6.42881 6.71818 6.91147 7.16132 7.58182 9.03786 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027173 B = 0.007147 C = 0.006872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.188171 B = 3916.780371 C = 4073.253707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.086 3.914 3 N -0.470 5.470 4 C 0.047 3.953 5 C 0.039 3.961 6 N -0.445 5.445 7 C 0.075 3.925 8 C 0.144 3.856 9 C -0.129 4.129 10 C -0.126 4.126 11 C -0.134 4.134 12 C 0.217 3.783 13 C -0.137 4.137 14 C -0.543 4.543 15 H 0.052 0.948 16 C 0.040 3.960 17 N -0.881 5.881 18 Si 0.937 3.063 19 H -0.269 1.269 20 H -0.290 1.290 21 H -0.281 1.281 22 O -0.355 6.355 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.108 0.892 26 H 0.209 0.791 27 H 0.212 0.788 28 H 0.078 0.922 29 H 0.032 0.968 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.462 3.584 -6.588 12.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.052 4.052 3 N -0.186 5.186 4 C -0.114 4.114 5 C -0.121 4.121 6 N -0.160 5.160 7 C -0.064 4.064 8 C 0.102 3.898 9 C -0.186 4.186 10 C -0.164 4.164 11 C -0.172 4.172 12 C 0.180 3.820 13 C -0.195 4.195 14 C -0.581 4.581 15 H 0.071 0.929 16 C -0.163 4.163 17 N -0.519 5.519 18 Si 0.765 3.235 19 H -0.193 1.193 20 H -0.217 1.217 21 H -0.207 1.207 22 O -0.274 6.274 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.126 0.874 26 H 0.225 0.775 27 H 0.228 0.772 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.280 3.826 -6.295 12.647 hybrid contribution -0.584 -0.618 0.994 1.308 sum 9.697 3.207 -5.301 11.507 Atomic orbital electron populations 1.21164 0.87256 1.02730 1.03927 1.22255 0.99077 0.89006 0.94855 1.68363 1.10590 1.29176 1.10421 1.24476 0.90049 1.01650 0.95179 1.24433 1.03446 0.87897 0.96366 1.68122 1.07437 1.31435 1.09021 1.21963 0.90874 0.96003 0.97596 1.20766 0.86176 0.88879 0.93939 1.21854 0.99820 0.98018 0.98936 1.23137 0.99138 0.99552 0.94613 1.23151 0.95795 0.99000 0.99266 1.19699 0.86242 0.87519 0.88571 1.22070 0.99085 0.98930 0.99368 1.21613 1.33123 0.92527 1.10795 0.92933 1.25563 0.95843 0.96188 0.98708 1.70054 1.39599 1.13972 1.28233 0.85850 0.78166 0.80335 0.79198 1.19347 1.21701 1.20685 1.88855 1.14098 1.65563 1.58901 0.91728 0.92508 0.87432 0.77459 0.77189 0.90335 0.94861 0.92526 0.88995 0.91410 0.91575 0.90305 0.91540 0.94315 0.94135 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.82 8.22 71.24 0.59 -3.24 16 2 C 0.09 3.32 6.76 42.54 0.29 3.60 16 3 N -0.47 -15.94 10.42 -183.29 -1.91 -17.85 16 4 C 0.05 1.16 11.23 84.69 0.95 2.11 16 5 C 0.04 0.95 11.23 84.69 0.95 1.90 16 6 N -0.44 -14.41 9.58 -183.29 -1.76 -16.17 16 7 C 0.07 2.81 5.67 42.54 0.24 3.05 16 8 C 0.14 5.70 0.86 -10.87 -0.01 5.70 16 9 C -0.13 -4.91 8.41 71.98 0.61 -4.31 16 10 C -0.13 -4.34 5.78 32.06 0.19 -4.16 16 11 C -0.13 -5.10 5.69 31.86 0.18 -4.92 16 12 C 0.22 10.01 0.70 -11.07 -0.01 10.01 16 13 C -0.14 -6.16 7.42 71.98 0.53 -5.63 16 14 C -0.54 -28.36 8.22 25.60 0.21 -28.15 16 15 H 0.05 2.73 7.52 -2.91 -0.02 2.71 16 16 C 0.04 2.12 5.26 84.65 0.45 2.57 16 17 N -0.88 -49.03 10.92 21.45 0.23 -48.79 16 18 Si 0.94 43.00 29.54 68.60 2.03 45.03 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 O -0.35 -16.76 6.07 -148.98 -0.90 -17.67 16 23 H 0.06 3.06 7.69 -2.39 -0.02 3.04 16 24 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.11 4.48 2.19 -2.39 -0.01 4.48 16 26 H 0.21 3.01 8.06 -2.91 -0.02 2.98 16 27 H 0.21 2.89 8.06 -2.91 -0.02 2.87 16 28 H 0.08 2.59 7.90 -2.39 -0.02 2.57 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 2.25 7.53 -2.38 -0.02 2.23 16 31 H 0.09 2.74 8.03 -2.39 -0.02 2.72 16 32 H 0.07 2.26 8.05 -2.39 -0.02 2.24 16 33 H 0.07 2.52 7.33 -2.39 -0.02 2.50 16 34 H 0.08 2.70 7.82 -2.39 -0.02 2.68 16 35 H 0.07 3.38 6.02 -2.39 -0.01 3.37 16 36 H 0.04 1.55 6.13 -2.38 -0.01 1.53 16 37 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 38 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -62.82 298.34 3.91 -58.91 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 1.06 Total: 18.01 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 5.16 Total: -21.47 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -3.43 Total: -82.81 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.90 Total: -17.67 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -62.82 3.91 -58.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383289003.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.364 kcal (2) G-P(sol) polarization free energy of solvation -62.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds