Wall clock time and date at job start Mon Mar 30 2020 06:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32163 * 119.99699 * 2 1 4 4 C 1.32114 * 120.00070 * 180.27651 * 3 2 1 5 5 C 1.38391 * 119.99647 * 359.73463 * 4 3 2 6 6 N 1.32126 * 119.99999 * 0.02562 * 5 4 3 7 7 C 1.32153 * 119.99752 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99651 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.48033 * 119.97927 * 8 7 6 10 10 C 1.53087 * 109.48157 * 359.94278 * 8 7 6 11 11 C 1.53187 * 109.15977 * 182.41132 * 10 8 7 12 12 C 1.53175 * 109.03728 * 56.98129 * 11 10 8 13 13 C 1.53089 * 109.16116 * 303.01543 * 12 11 10 14 14 H 1.08999 * 109.49633 * 297.62056 * 13 12 11 15 15 C 1.50706 * 109.48148 * 177.59310 * 13 12 11 16 16 H 1.08000 * 119.99302 * 0.05967 * 15 13 12 17 17 C 1.37871 * 120.00436 * 179.78501 * 15 13 12 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46683 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47426 * 119.99743 * 19 17 15 22 22 H 1.48501 * 109.46833 * 239.99986 * 19 17 15 23 23 O 1.42899 * 109.41514 * 57.61334 * 13 12 11 24 24 H 1.08993 * 109.46919 * 270.24417 * 1 2 3 25 25 H 1.09004 * 109.47127 * 30.24605 * 1 2 3 26 26 H 1.08993 * 109.46674 * 150.24413 * 1 2 3 27 27 H 1.08001 * 120.00412 * 179.75705 * 4 3 2 28 28 H 1.08005 * 120.00324 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47057 * 180.02562 * 9 8 7 30 30 H 1.08996 * 109.46973 * 300.01962 * 9 8 7 31 31 H 1.08997 * 109.47224 * 60.02502 * 9 8 7 32 32 H 1.08998 * 109.52195 * 302.30910 * 10 8 7 33 33 H 1.08998 * 109.52271 * 62.50500 * 10 8 7 34 34 H 1.09005 * 109.53957 * 176.84540 * 11 10 8 35 35 H 1.08998 * 109.54023 * 297.02098 * 11 10 8 36 36 H 1.09000 * 109.52123 * 183.11317 * 12 11 10 37 37 H 1.08998 * 109.52414 * 62.92259 * 12 11 10 38 38 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1678 1.1446 0.0000 4 6 3.4889 1.1447 -0.0055 5 6 4.1809 -0.0538 -0.0058 6 7 3.5203 -1.1981 -0.0010 7 6 2.1988 -1.1980 0.0046 8 6 1.4454 -2.5031 0.0094 9 6 0.5712 -2.5830 1.2627 10 6 2.4400 -3.6668 0.0054 11 6 1.6673 -4.9884 -0.0505 12 6 0.7670 -4.9888 -1.2898 13 6 -0.1630 -3.7740 -1.2356 14 1 -0.8069 -3.8475 -0.3593 15 6 -1.0113 -3.7345 -2.4806 16 1 -0.8995 -4.4996 -3.2346 17 6 -1.9342 -2.7251 -2.6544 18 7 -2.0744 -1.7968 -1.7334 19 14 -2.9862 -2.6766 -4.1972 20 1 -2.6377 -3.8263 -5.0701 21 1 -4.4204 -2.7571 -3.8211 22 1 -2.7362 -1.4078 -4.9271 23 8 0.6188 -2.5806 -1.1538 24 1 -0.3633 0.0044 1.0276 25 1 -0.3633 0.8878 -0.5177 26 1 -0.3632 -0.8921 -0.5100 27 1 4.0289 2.0800 -0.0095 28 1 5.2610 -0.0539 -0.0107 29 1 0.0267 -3.5272 1.2663 30 1 1.2018 -2.5239 2.1498 31 1 -0.1374 -1.7548 1.2648 32 1 3.0896 -3.5877 -0.8662 33 1 3.0418 -3.6348 0.9136 34 1 2.3702 -5.8194 -0.1102 35 1 1.0560 -5.0915 0.8460 36 1 0.1725 -5.9021 -1.3078 37 1 1.3830 -4.9363 -2.1875 38 1 -2.7240 -1.0867 -1.8555 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383382870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:57 Heat of formation + Delta-G solvation = -1.724037 kcal Electronic energy + Delta-G solvation = -21014.021022 eV Core-core repulsion = 18049.584201 eV Total energy + Delta-G solvation = -2964.436820 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.93101 -38.61417 -34.23003 -33.70428 -32.77640 -32.11780 -30.06499 -27.99386 -27.33265 -25.11686 -24.40375 -22.58591 -21.89898 -21.06313 -18.30298 -17.21022 -16.79781 -16.16938 -15.47703 -15.04399 -14.57142 -14.38358 -14.19460 -13.83148 -13.41462 -12.64639 -12.48922 -12.25904 -12.14780 -12.02426 -11.54549 -11.32222 -11.10508 -10.96589 -10.93310 -10.87175 -10.60879 -10.44889 -10.31640 -10.14444 -9.86507 -9.74263 -8.97821 -8.69196 -8.58588 -8.36256 -7.89654 -6.09933 -4.19739 1.17242 1.54037 3.26937 3.36167 3.39274 3.99438 4.31540 4.37917 4.58886 4.87597 5.00677 5.16372 5.38927 5.43672 5.60009 5.67714 5.74110 5.83184 5.89830 5.96745 6.04634 6.24772 6.31801 6.33849 6.40834 6.53826 6.57413 6.70320 6.73356 6.87094 6.88743 6.90468 6.98537 7.48066 7.51435 7.72830 7.88715 8.22289 8.24073 8.69959 9.01729 9.50531 10.97310 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020055 B = 0.008326 C = 0.006637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.806249 B = 3362.115703 C = 4217.588128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.118 3.882 3 N -0.452 5.452 4 C 0.039 3.961 5 C 0.025 3.975 6 N -0.430 5.430 7 C 0.104 3.896 8 C 0.163 3.837 9 C -0.181 4.181 10 C -0.120 4.120 11 C -0.124 4.124 12 C -0.145 4.145 13 C 0.216 3.784 14 H 0.025 0.975 15 C -0.521 4.521 16 H 0.065 0.935 17 C 0.080 3.920 18 N -0.861 5.861 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 O -0.344 6.344 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.163 0.837 27 H 0.161 0.839 28 H 0.162 0.838 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.679 1.278 5.683 9.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.022 4.022 3 N -0.167 5.167 4 C -0.120 4.120 5 C -0.134 4.134 6 N -0.145 5.145 7 C -0.037 4.037 8 C 0.121 3.879 9 C -0.238 4.238 10 C -0.158 4.158 11 C -0.161 4.161 12 C -0.183 4.183 13 C 0.161 3.839 14 H 0.042 0.958 15 C -0.558 4.558 16 H 0.083 0.917 17 C -0.126 4.126 18 N -0.498 5.498 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 O -0.263 6.263 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.180 0.820 27 H 0.178 0.822 28 H 0.179 0.821 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.579 1.578 5.589 9.548 hybrid contribution -0.176 0.179 -0.631 0.680 sum 7.403 1.757 4.958 9.081 Atomic orbital electron populations 1.21579 0.86091 1.08797 1.02578 1.22422 0.99422 0.88185 0.92181 1.68381 1.08586 1.29828 1.09940 1.23648 0.91278 0.99427 0.97693 1.23584 1.01360 0.89042 0.99458 1.68162 1.08510 1.29562 1.08231 1.21949 0.89825 0.96248 0.95700 1.19738 0.90220 0.88126 0.89810 1.22618 1.00468 1.04536 0.96219 1.21880 0.97574 0.94336 1.02032 1.21713 0.98523 0.96600 0.99282 1.22259 0.98591 1.00954 0.96493 1.19840 0.86942 0.79604 0.97501 0.95767 1.21078 1.17419 1.11429 1.05843 0.91710 1.25006 0.96287 0.95101 0.96193 1.69802 1.33924 1.12938 1.33093 0.86539 0.79944 0.78116 0.83378 1.19744 1.20898 1.20895 1.88388 1.56413 1.43813 1.37694 0.91528 0.91751 0.82004 0.82165 0.82073 0.90807 0.93558 0.90228 0.91416 0.92298 0.93078 0.92410 0.92404 0.92528 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.30 36.01 0.30 -2.43 16 2 C 0.12 2.38 6.65 -82.41 -0.55 1.83 16 3 N -0.45 -8.38 10.42 -9.29 -0.10 -8.48 16 4 C 0.04 0.58 11.23 -17.37 -0.20 0.39 16 5 C 0.02 0.37 11.23 -17.37 -0.19 0.18 16 6 N -0.43 -7.86 9.18 -9.29 -0.09 -7.94 16 7 C 0.10 2.09 5.81 -82.42 -0.48 1.61 16 8 C 0.16 3.31 0.66 -91.73 -0.06 3.25 16 9 C -0.18 -3.36 7.58 37.16 0.28 -3.08 16 10 C -0.12 -2.23 4.15 -26.59 -0.11 -2.34 16 11 C -0.12 -2.18 5.72 -26.54 -0.15 -2.33 16 12 C -0.15 -2.98 5.36 -26.59 -0.14 -3.12 16 13 C 0.22 5.20 2.17 -27.83 -0.06 5.14 16 14 H 0.02 0.62 6.34 -51.93 -0.33 0.29 16 15 C -0.52 -13.80 8.79 -34.44 -0.30 -14.11 16 16 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 17 C 0.08 2.10 5.40 -17.82 -0.10 2.01 16 18 N -0.86 -22.77 11.00 55.43 0.61 -22.16 16 19 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 O -0.34 -8.31 7.11 -35.23 -0.25 -8.56 16 24 H 0.07 1.23 7.05 -51.93 -0.37 0.86 16 25 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.16 3.75 3.00 -51.93 -0.16 3.60 16 27 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 28 H 0.16 1.71 8.06 -52.48 -0.42 1.29 16 29 H 0.07 1.37 4.98 -51.93 -0.26 1.11 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.52 4.61 -51.93 -0.24 1.28 16 32 H 0.07 1.33 8.00 -51.93 -0.42 0.91 16 33 H 0.06 1.01 8.12 -51.93 -0.42 0.58 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.97 6.62 -51.93 -0.34 0.62 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 293.20 15.07 4.42 4.42 Total: -1.00 -28.58 293.20 -7.22 -35.79 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.03 Total: 4.39 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -1.76 Total: -13.00 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.43 Total: -38.58 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.25 Total: -8.56 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.58 -7.22 -35.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383382870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.068 kcal (2) G-P(sol) polarization free energy of solvation -28.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds