Wall clock time and date at job start Mon Mar 30 2020 06:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32163 * 119.99699 * 2 1 4 4 C 1.32114 * 120.00070 * 180.27651 * 3 2 1 5 5 C 1.38391 * 119.99647 * 359.73463 * 4 3 2 6 6 N 1.32126 * 119.99999 * 0.02562 * 5 4 3 7 7 C 1.32153 * 119.99752 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99651 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.48033 * 119.97927 * 8 7 6 10 10 C 1.53087 * 109.48157 * 359.94278 * 8 7 6 11 11 C 1.53187 * 109.15977 * 182.41132 * 10 8 7 12 12 C 1.53175 * 109.03728 * 56.98129 * 11 10 8 13 13 C 1.53089 * 109.16116 * 303.01543 * 12 11 10 14 14 H 1.08999 * 109.49633 * 297.62056 * 13 12 11 15 15 C 1.50706 * 109.48148 * 177.59310 * 13 12 11 16 16 H 1.08000 * 119.99302 * 0.05967 * 15 13 12 17 17 C 1.37871 * 120.00436 * 179.78501 * 15 13 12 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46683 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47426 * 119.99743 * 19 17 15 22 22 H 1.48501 * 109.46833 * 239.99986 * 19 17 15 23 23 O 1.42899 * 109.41514 * 57.61334 * 13 12 11 24 24 H 1.08993 * 109.46919 * 270.24417 * 1 2 3 25 25 H 1.09004 * 109.47127 * 30.24605 * 1 2 3 26 26 H 1.08993 * 109.46674 * 150.24413 * 1 2 3 27 27 H 1.08001 * 120.00412 * 179.75705 * 4 3 2 28 28 H 1.08005 * 120.00324 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47057 * 180.02562 * 9 8 7 30 30 H 1.08996 * 109.46973 * 300.01962 * 9 8 7 31 31 H 1.08997 * 109.47224 * 60.02502 * 9 8 7 32 32 H 1.08998 * 109.52195 * 302.30910 * 10 8 7 33 33 H 1.08998 * 109.52271 * 62.50500 * 10 8 7 34 34 H 1.09005 * 109.53957 * 176.84540 * 11 10 8 35 35 H 1.08998 * 109.54023 * 297.02098 * 11 10 8 36 36 H 1.09000 * 109.52123 * 183.11317 * 12 11 10 37 37 H 1.08998 * 109.52414 * 62.92259 * 12 11 10 38 38 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1678 1.1446 0.0000 4 6 3.4889 1.1447 -0.0055 5 6 4.1809 -0.0538 -0.0058 6 7 3.5203 -1.1981 -0.0010 7 6 2.1988 -1.1980 0.0046 8 6 1.4454 -2.5031 0.0094 9 6 0.5712 -2.5830 1.2627 10 6 2.4400 -3.6668 0.0054 11 6 1.6673 -4.9884 -0.0505 12 6 0.7670 -4.9888 -1.2898 13 6 -0.1630 -3.7740 -1.2356 14 1 -0.8069 -3.8475 -0.3593 15 6 -1.0113 -3.7345 -2.4806 16 1 -0.8995 -4.4996 -3.2346 17 6 -1.9342 -2.7251 -2.6544 18 7 -2.0744 -1.7968 -1.7334 19 14 -2.9862 -2.6766 -4.1972 20 1 -2.6377 -3.8263 -5.0701 21 1 -4.4204 -2.7571 -3.8211 22 1 -2.7362 -1.4078 -4.9271 23 8 0.6188 -2.5806 -1.1538 24 1 -0.3633 0.0044 1.0276 25 1 -0.3633 0.8878 -0.5177 26 1 -0.3632 -0.8921 -0.5100 27 1 4.0289 2.0800 -0.0095 28 1 5.2610 -0.0539 -0.0107 29 1 0.0267 -3.5272 1.2663 30 1 1.2018 -2.5239 2.1498 31 1 -0.1374 -1.7548 1.2648 32 1 3.0896 -3.5877 -0.8662 33 1 3.0418 -3.6348 0.9136 34 1 2.3702 -5.8194 -0.1102 35 1 1.0560 -5.0915 0.8460 36 1 0.1725 -5.9021 -1.3078 37 1 1.3830 -4.9363 -2.1875 38 1 -2.7240 -1.0867 -1.8555 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383382870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:57 Heat of formation + Delta-G solvation = -19.160615 kcal Electronic energy + Delta-G solvation = -21014.777128 eV Core-core repulsion = 18049.584201 eV Total energy + Delta-G solvation = -2965.192927 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.29955 -40.19424 -35.68830 -35.27169 -34.40983 -33.87184 -31.63801 -29.46770 -28.95063 -26.85643 -25.79889 -24.13796 -23.39049 -22.64201 -19.88587 -18.79374 -18.41218 -17.69330 -16.81402 -16.71237 -16.29965 -15.86200 -15.69782 -15.33137 -14.95953 -14.34268 -14.08625 -13.86308 -13.60057 -13.52687 -13.07806 -12.85480 -12.77060 -12.66774 -12.55808 -12.46360 -12.20513 -12.06565 -11.92778 -11.64435 -11.63997 -11.32356 -10.80628 -10.47645 -10.00239 -9.84620 -9.58157 -8.07690 -6.24654 -0.14193 0.20196 1.42288 1.46042 1.55309 2.44317 2.63484 2.96281 3.22814 3.29987 3.58652 3.74825 3.90726 4.07452 4.11793 4.27884 4.34608 4.41678 4.51741 4.52930 4.57962 4.71012 4.78224 4.83908 4.90717 4.99341 5.05631 5.19699 5.20675 5.28226 5.35357 5.44503 5.47662 5.65631 5.80578 5.99394 6.31343 6.40621 6.74065 6.90041 7.22635 7.48398 8.97629 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020055 B = 0.008326 C = 0.006637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.806249 B = 3362.115703 C = 4217.588128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.091 3.909 3 N -0.472 5.472 4 C 0.049 3.951 5 C 0.037 3.963 6 N -0.443 5.443 7 C 0.079 3.921 8 C 0.156 3.844 9 C -0.173 4.173 10 C -0.112 4.112 11 C -0.117 4.117 12 C -0.140 4.140 13 C 0.217 3.783 14 H 0.005 0.995 15 C -0.549 4.549 16 H 0.057 0.943 17 C 0.037 3.963 18 N -0.875 5.875 19 Si 0.949 3.051 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.286 1.286 23 O -0.370 6.370 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.138 0.862 27 H 0.210 0.790 28 H 0.212 0.788 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.808 1.655 6.235 11.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.047 4.047 3 N -0.187 5.187 4 C -0.112 4.112 5 C -0.124 4.124 6 N -0.158 5.158 7 C -0.060 4.060 8 C 0.114 3.886 9 C -0.231 4.231 10 C -0.150 4.150 11 C -0.154 4.154 12 C -0.178 4.178 13 C 0.162 3.838 14 H 0.023 0.977 15 C -0.587 4.587 16 H 0.075 0.925 17 C -0.167 4.167 18 N -0.512 5.512 19 Si 0.775 3.225 20 H -0.195 1.195 21 H -0.201 1.201 22 H -0.213 1.213 23 O -0.290 6.290 24 H 0.093 0.907 25 H 0.072 0.928 26 H 0.156 0.844 27 H 0.226 0.774 28 H 0.228 0.772 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.667 1.922 6.149 11.617 hybrid contribution -0.669 0.189 -0.778 1.043 sum 8.998 2.112 5.371 10.690 Atomic orbital electron populations 1.21379 0.87420 1.06990 1.02705 1.22245 0.99041 0.89068 0.94343 1.68363 1.10604 1.29245 1.10537 1.24497 0.90063 1.01667 0.94923 1.24453 1.03489 0.87938 0.96528 1.68179 1.07623 1.31380 1.08666 1.21811 0.90737 0.95773 0.97725 1.19929 0.90339 0.89459 0.88828 1.22523 1.00305 1.03668 0.96578 1.21800 0.97066 0.93940 1.02161 1.21680 0.98517 0.97219 0.97974 1.22150 0.98426 0.99631 0.97615 1.19648 0.87444 0.81092 0.95602 0.97697 1.21392 1.18839 1.11668 1.06766 0.92474 1.25672 0.97386 0.94961 0.98686 1.69926 1.34107 1.13026 1.34122 0.85659 0.78793 0.77669 0.80333 1.19546 1.20076 1.21271 1.88286 1.57085 1.43785 1.39801 0.90675 0.92763 0.84395 0.77363 0.77167 0.91303 0.91416 0.91539 0.92839 0.90472 0.90294 0.91419 0.91717 0.93760 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.41 8.30 71.24 0.59 -4.82 16 2 C 0.09 3.67 6.65 42.53 0.28 3.95 16 3 N -0.47 -16.80 10.42 -183.29 -1.91 -18.71 16 4 C 0.05 1.29 11.23 84.69 0.95 2.24 16 5 C 0.04 0.94 11.23 84.68 0.95 1.89 16 6 N -0.44 -15.21 9.18 -183.30 -1.68 -16.89 16 7 C 0.08 3.11 5.81 42.53 0.25 3.36 16 8 C 0.16 6.33 0.66 -11.51 -0.01 6.32 16 9 C -0.17 -6.46 7.58 71.98 0.55 -5.91 16 10 C -0.11 -4.00 4.15 30.69 0.13 -3.87 16 11 C -0.12 -3.93 5.72 30.72 0.18 -3.75 16 12 C -0.14 -5.79 5.36 30.68 0.16 -5.62 16 13 C 0.22 10.75 2.17 29.88 0.06 10.81 16 14 H 0.01 0.28 6.34 -2.39 -0.02 0.27 16 15 C -0.55 -30.04 8.79 25.60 0.23 -29.81 16 16 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 17 C 0.04 1.99 5.40 84.65 0.46 2.44 16 18 N -0.88 -47.80 11.00 21.45 0.24 -47.57 16 19 Si 0.95 43.07 29.54 68.60 2.03 45.09 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 23 O -0.37 -18.39 7.11 -148.98 -1.06 -19.45 16 24 H 0.07 2.89 7.05 -2.39 -0.02 2.87 16 25 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.14 6.67 3.00 -2.39 -0.01 6.67 16 27 H 0.21 3.29 8.06 -2.91 -0.02 3.26 16 28 H 0.21 3.21 8.06 -2.91 -0.02 3.18 16 29 H 0.07 2.58 4.98 -2.39 -0.01 2.56 16 30 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.07 2.63 4.61 -2.39 -0.01 2.62 16 32 H 0.05 2.05 8.00 -2.39 -0.02 2.03 16 33 H 0.08 2.46 8.12 -2.39 -0.02 2.44 16 34 H 0.08 2.23 8.14 -2.38 -0.02 2.22 16 35 H 0.07 2.15 6.62 -2.39 -0.02 2.14 16 36 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.26 13.66 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -63.80 293.20 3.45 -60.35 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 1.07 Total: 19.94 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 4.77 Total: -22.76 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -3.36 Total: -83.17 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -1.06 Total: -19.45 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -63.80 3.45 -60.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383382870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.191 kcal (2) G-P(sol) polarization free energy of solvation -63.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds