Wall clock time and date at job start Mon Mar 30 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35902 * 116.99616 * 2 1 4 4 C 1.38733 * 120.05155 * 180.02562 * 3 2 1 5 5 C 1.38150 * 119.94391 * 180.02562 * 4 3 2 6 6 C 1.38263 * 120.05394 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.94507 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.48784 * 25.02947 * 7 6 5 9 9 C 1.53091 * 109.48010 * 264.99984 * 7 6 5 10 10 C 1.53176 * 109.21206 * 182.43847 * 9 7 6 11 11 C 1.53174 * 109.03724 * 56.94941 * 10 9 7 12 12 C 1.53084 * 109.16456 * 303.01556 * 11 10 9 13 13 H 1.08997 * 109.48095 * 297.62758 * 12 11 10 14 14 C 1.50703 * 109.48277 * 177.60348 * 12 11 10 15 15 H 1.07996 * 119.99949 * 359.97438 * 14 12 11 16 16 C 1.37877 * 119.99925 * 179.97438 * 14 12 11 17 17 N 1.31511 * 119.99753 * 179.97438 * 16 14 12 18 18 Si 1.86797 * 120.00187 * 0.02562 * 16 14 12 19 19 H 1.48498 * 109.47573 * 89.99986 * 18 16 14 20 20 H 1.48508 * 109.47027 * 209.99981 * 18 16 14 21 21 H 1.48505 * 109.47005 * 329.99471 * 18 16 14 22 22 O 1.42906 * 109.41372 * 57.61236 * 12 11 10 23 23 C 1.38271 * 120.11186 * 0.25088 * 6 5 4 24 24 C 1.38145 * 120.05448 * 359.45455 * 23 6 5 25 25 H 1.09001 * 109.47074 * 299.99761 * 1 2 3 26 26 H 1.08989 * 109.47231 * 59.99976 * 1 2 3 27 27 H 1.08998 * 109.46939 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.03264 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.97286 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.52401 * 62.50000 * 9 7 6 31 31 H 1.09004 * 109.52068 * 302.37645 * 9 7 6 32 32 H 1.09004 * 109.53956 * 176.81728 * 10 9 7 33 33 H 1.08997 * 109.54550 * 296.98990 * 10 9 7 34 34 H 1.09007 * 109.52410 * 62.92341 * 11 10 9 35 35 H 1.09003 * 109.52246 * 183.11215 * 11 10 9 36 36 H 0.97007 * 120.00124 * 180.02562 * 17 16 14 37 37 H 1.08000 * 119.96976 * 179.70525 * 23 6 5 38 38 H 1.08002 * 120.02876 * 180.24662 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5170 0.0000 6 6 3.3019 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 1 4.9804 4.9204 -0.4325 9 6 4.1063 5.5290 1.4411 10 6 4.7470 6.9203 1.4302 11 6 3.9055 7.8510 0.5516 12 6 3.7943 7.2518 -0.8527 13 1 4.7866 7.1837 -1.2985 14 6 2.9189 8.1322 -1.7069 15 1 2.4848 9.0291 -1.2904 16 6 2.6722 7.7926 -3.0203 17 7 1.9079 8.5607 -3.7656 18 14 3.4225 6.2410 -3.7406 19 1 2.4957 5.0997 -3.5314 20 1 3.6525 6.4316 -5.1953 21 1 4.7159 5.9582 -3.0679 22 8 3.2192 5.9463 -0.7679 23 6 1.9210 3.6048 0.0079 24 6 1.2915 2.3751 0.0013 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 4.0209 0.3800 -0.0005 29 1 5.1345 2.5751 -0.0008 30 1 4.7286 4.8459 2.0192 31 1 3.1151 5.5879 1.8908 32 1 4.7836 7.3127 2.4465 33 1 5.7580 6.8531 1.0287 34 1 2.9098 7.9570 0.9823 35 1 4.3842 8.8286 0.4936 36 1 1.7340 8.3216 -4.6895 37 1 1.3342 4.5114 0.0140 38 1 0.2129 2.3201 0.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383995384.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:52 Heat of formation + Delta-G solvation = -86.986725 kcal Electronic energy + Delta-G solvation = -19960.146861 eV Core-core repulsion = 16959.720022 eV Total energy + Delta-G solvation = -3000.426839 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.23544 -40.16342 -38.23347 -34.99654 -34.32529 -33.10595 -32.03634 -30.43232 -28.32551 -27.43573 -25.17255 -23.60316 -23.46907 -21.94788 -20.94123 -19.15457 -18.99924 -17.41166 -17.25949 -16.68105 -16.61477 -16.08384 -15.86837 -15.44251 -15.28375 -14.90449 -14.56485 -14.33614 -14.28509 -13.86401 -13.45450 -13.29023 -12.94199 -12.81643 -12.61029 -12.50630 -12.06871 -11.95942 -11.82783 -11.70590 -11.66366 -11.37799 -10.99361 -10.78215 -10.06415 -9.96160 -9.05353 -8.38571 -6.50376 0.35878 0.41673 1.32069 1.39767 1.48682 2.33885 2.35674 2.67472 2.84868 3.41791 3.84949 3.91700 3.95097 4.08266 4.09740 4.26780 4.34444 4.36564 4.37737 4.40967 4.51606 4.55225 4.69146 4.73153 4.76414 4.92989 5.02959 5.08401 5.10623 5.20424 5.25931 5.27647 5.39672 5.52285 5.58343 5.71964 5.76956 6.21319 6.41418 6.53931 6.86176 7.26005 8.75287 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.019583 B = 0.006673 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.450760 B = 4194.734252 C = 4994.365526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.330 6.330 3 C 0.114 3.886 4 C -0.156 4.156 5 C -0.074 4.074 6 C -0.127 4.127 7 C 0.114 3.886 8 H 0.058 0.942 9 C -0.129 4.129 10 C -0.115 4.115 11 C -0.131 4.131 12 C 0.184 3.816 13 H 0.015 0.985 14 C -0.522 4.522 15 H 0.046 0.954 16 C 0.033 3.967 17 N -0.936 5.936 18 Si 0.964 3.036 19 H -0.282 1.282 20 H -0.297 1.297 21 H -0.255 1.255 22 O -0.399 6.399 23 C -0.071 4.071 24 C -0.214 4.214 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.124 0.876 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.269 0.731 37 H 0.112 0.888 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.199 -16.715 10.891 20.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.069 3.931 4 C -0.174 4.174 5 C -0.092 4.092 6 C -0.127 4.127 7 C 0.056 3.944 8 H 0.075 0.925 9 C -0.167 4.167 10 C -0.152 4.152 11 C -0.169 4.169 12 C 0.128 3.872 13 H 0.032 0.968 14 C -0.559 4.559 15 H 0.064 0.936 16 C -0.167 4.167 17 N -0.575 5.575 18 Si 0.792 3.208 19 H -0.208 1.208 20 H -0.224 1.224 21 H -0.179 1.179 22 O -0.320 6.320 23 C -0.090 4.090 24 C -0.233 4.233 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.143 0.857 28 H 0.170 0.830 29 H 0.171 0.829 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.130 0.870 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.028 -16.917 10.659 20.223 hybrid contribution -0.384 0.244 -0.700 0.835 sum 2.645 -16.672 9.959 19.599 Atomic orbital electron populations 1.23322 0.76739 1.05608 1.01956 1.86021 1.23217 1.26398 1.88759 1.19193 0.92906 0.84248 0.96724 1.20617 0.91370 0.98965 1.06447 1.21009 1.00887 0.90115 0.97151 1.19794 0.94115 0.94376 1.04402 1.20944 0.93766 0.87018 0.92623 0.92458 1.22069 1.01757 0.97350 0.95519 1.21631 0.98747 0.94465 1.00398 1.21966 0.99874 0.99251 0.95774 1.20077 0.93114 0.80264 0.93696 0.96767 1.21260 1.32184 1.07238 0.95247 0.93565 1.25820 0.94302 0.99075 0.97527 1.70042 1.38683 1.40001 1.08818 0.85423 0.80139 0.79682 0.75560 1.20787 1.22419 1.17896 1.88096 1.50479 1.22184 1.71212 1.20879 0.94738 0.97310 0.96044 1.21391 1.00933 0.91874 1.09072 0.91845 0.92600 0.85739 0.82962 0.82863 0.88864 0.92183 0.89677 0.91239 0.93261 0.91691 0.92247 0.86992 0.84089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.33 -7.93 10.50 -92.45 -0.97 -8.90 16 3 C 0.11 3.13 6.69 22.51 0.15 3.28 16 4 C -0.16 -3.97 9.99 22.37 0.22 -3.74 16 5 C -0.07 -1.99 9.67 22.25 0.22 -1.77 16 6 C -0.13 -4.22 5.01 -19.85 -0.10 -4.32 16 7 C 0.11 4.09 2.85 29.88 0.09 4.18 16 8 H 0.06 1.97 8.05 -2.39 -0.02 1.96 16 9 C -0.13 -3.82 5.40 30.68 0.17 -3.65 16 10 C -0.12 -3.40 6.03 30.71 0.19 -3.21 16 11 C -0.13 -5.16 5.36 30.68 0.16 -4.99 16 12 C 0.18 8.87 1.98 29.88 0.06 8.93 16 13 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 14 C -0.52 -30.79 9.38 25.60 0.24 -30.55 16 15 H 0.05 2.95 7.99 -2.91 -0.02 2.93 16 16 C 0.03 1.98 5.47 84.66 0.46 2.45 16 17 N -0.94 -59.53 13.96 21.45 0.30 -59.23 16 18 Si 0.96 49.36 26.18 68.60 1.80 51.15 16 19 H -0.28 -14.67 7.11 99.48 0.71 -13.97 16 20 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 21 H -0.25 -12.22 6.54 99.48 0.65 -11.57 16 22 O -0.40 -18.55 6.90 -148.98 -1.03 -19.58 16 23 C -0.07 -2.48 9.35 22.26 0.21 -2.27 16 24 C -0.21 -6.29 9.04 22.36 0.20 -6.09 16 25 H 0.06 0.93 7.66 -2.39 -0.02 0.91 16 26 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 27 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 29 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.27 15.98 8.31 -92.70 -0.77 15.21 16 37 H 0.11 4.31 7.63 -2.91 -0.02 4.29 16 38 H 0.14 3.50 6.30 -2.91 -0.02 3.48 16 Total: -1.00 -70.58 308.21 4.45 -66.13 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.97 Total: 10.78 kcal Atomic # 6 Polarization: -43.72 SS G_CDS: 3.37 Total: -40.35 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.30 Total: -59.23 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -2.00 Total: -28.48 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 1.80 Total: 51.15 kcal Total: -70.58 4.45 -66.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383995384.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.855 kcal (2) G-P(sol) polarization free energy of solvation -70.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds