Wall clock time and date at job start Mon Mar 30 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99628 * 2 1 4 4 C 1.38730 * 120.05544 * 359.73068 * 3 2 1 5 5 C 1.38148 * 119.94252 * 179.70001 * 4 3 2 6 6 C 1.38271 * 120.05423 * 0.59227 * 5 4 3 7 7 C 1.50697 * 119.94531 * 179.70226 * 6 5 4 8 8 H 1.09000 * 109.48177 * 160.00331 * 7 6 5 9 9 C 1.53093 * 109.48172 * 280.03450 * 7 6 5 10 10 C 1.53176 * 109.16406 * 177.58812 * 9 7 6 11 11 C 1.53173 * 109.03910 * 303.02495 * 10 9 7 12 12 C 1.53093 * 109.16640 * 56.97598 * 11 10 9 13 13 H 1.09003 * 109.47307 * 62.37516 * 12 11 10 14 14 C 1.50694 * 109.49057 * 182.40414 * 12 11 10 15 15 H 1.08002 * 120.00445 * 359.94820 * 14 12 11 16 16 C 1.37884 * 120.00017 * 179.97438 * 14 12 11 17 17 N 1.31514 * 119.99560 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99857 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47167 * 89.99923 * 18 16 14 20 20 H 1.48504 * 109.46855 * 209.99389 * 18 16 14 21 21 H 1.48495 * 109.47383 * 329.99390 * 18 16 14 22 22 O 1.42895 * 109.41482 * 302.39390 * 12 11 10 23 23 C 1.38267 * 120.11114 * 359.68094 * 6 5 4 24 24 C 1.38151 * 120.05677 * 0.02562 * 23 6 5 25 25 H 1.09002 * 109.47382 * 59.99787 * 1 2 3 26 26 H 1.09001 * 109.46938 * 299.99774 * 1 2 3 27 27 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.03088 * 359.97438 * 4 3 2 29 29 H 1.07993 * 119.97527 * 180.27495 * 5 4 3 30 30 H 1.09000 * 109.52292 * 297.50132 * 9 7 6 31 31 H 1.09000 * 109.52105 * 57.68642 * 9 7 6 32 32 H 1.08996 * 109.54659 * 183.15320 * 10 9 7 33 33 H 1.09009 * 109.61445 * 62.93184 * 10 9 7 34 34 H 1.09005 * 109.52004 * 297.06983 * 11 10 9 35 35 H 1.09001 * 109.52638 * 176.88663 * 11 10 9 36 36 H 0.97001 * 119.99291 * 180.02562 * 17 16 14 37 37 H 1.08003 * 119.97499 * 180.02562 * 23 6 5 38 38 H 1.07998 * 120.02823 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3751 -0.0056 5 6 1.9209 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 3.9859 5.0187 0.0002 8 1 5.0115 4.9041 0.3513 9 6 3.9931 5.5881 -1.4208 10 6 4.6357 6.9784 -1.4022 11 6 3.8679 7.8707 -0.4222 12 6 3.8655 7.2131 0.9603 13 1 4.8896 7.1275 1.3237 14 6 3.0616 8.0559 1.9166 15 1 2.5992 8.9697 1.5736 16 6 2.9169 7.6608 3.2296 17 7 3.4800 6.5481 3.6472 18 14 1.9199 8.7052 4.4148 19 1 0.5010 8.2679 4.3867 20 1 2.4596 8.5462 5.7891 21 1 2.0064 10.1315 4.0109 22 8 3.2827 5.9118 0.8663 23 6 4.0560 2.5171 0.0001 24 6 3.4313 1.2849 -0.0001 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2129 2.3201 -0.0105 29 1 1.3341 4.5114 0.0007 30 1 4.5666 4.9303 -2.0739 31 1 2.9696 5.6649 -1.7876 32 1 4.5937 7.4130 -2.4008 33 1 5.6750 6.8969 -1.0835 34 1 2.8417 7.9936 -0.7689 35 1 4.3518 8.8455 -0.3611 36 1 3.3779 6.2699 4.5709 37 1 5.1345 2.5752 0.0001 38 1 4.0209 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383995389.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:54 Heat of formation + Delta-G solvation = -70.385926 kcal Electronic energy + Delta-G solvation = -19810.006140 eV Core-core repulsion = 16810.299166 eV Total energy + Delta-G solvation = -2999.706974 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.90703 -38.41433 -36.78524 -32.95982 -32.41661 -31.16523 -30.70708 -28.72771 -27.13322 -25.47644 -23.51455 -22.25999 -21.91125 -20.48996 -19.16141 -17.92530 -16.64954 -15.96861 -15.61569 -15.42183 -14.61319 -14.47283 -14.28246 -13.95596 -13.71986 -13.31057 -13.07114 -12.76915 -12.57048 -12.23661 -11.97518 -11.79252 -11.36678 -10.99468 -10.84631 -10.80092 -10.64338 -10.48691 -10.33178 -10.24591 -9.81797 -9.61196 -8.85960 -8.63027 -8.50363 -7.97330 -7.63475 -5.99758 -4.12304 1.70129 1.80623 3.31530 3.38118 3.40478 3.41485 4.11677 4.42567 4.90716 5.01755 5.15675 5.16665 5.28536 5.34474 5.44382 5.55045 5.58663 5.66930 5.75283 5.82305 5.91294 6.08113 6.14072 6.16794 6.33481 6.39132 6.53392 6.62846 6.67410 6.76827 6.86408 6.89132 6.92739 7.07866 7.18204 7.53416 7.62110 7.90836 8.29700 8.79337 9.14555 9.58017 11.07564 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018760 B = 0.005961 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.186677 B = 4696.192319 C = 5676.696508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.324 6.324 3 C 0.112 3.888 4 C -0.211 4.211 5 C -0.047 4.047 6 C -0.091 4.091 7 C 0.125 3.875 8 H 0.048 0.952 9 C -0.139 4.139 10 C -0.120 4.120 11 C -0.144 4.144 12 C 0.219 3.781 13 H 0.014 0.986 14 C -0.527 4.527 15 H 0.063 0.937 16 C 0.079 3.921 17 N -0.858 5.858 18 Si 0.890 3.110 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.273 1.273 22 O -0.348 6.348 23 C -0.077 4.077 24 C -0.156 4.156 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.131 0.869 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.260 0.740 37 H 0.126 0.874 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 -9.111 -8.810 12.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.238 6.238 3 C 0.067 3.933 4 C -0.230 4.230 5 C -0.066 4.066 6 C -0.092 4.092 7 C 0.066 3.934 8 H 0.066 0.934 9 C -0.177 4.177 10 C -0.158 4.158 11 C -0.182 4.182 12 C 0.164 3.836 13 H 0.031 0.969 14 C -0.565 4.565 15 H 0.082 0.918 16 C -0.128 4.128 17 N -0.493 5.493 18 Si 0.717 3.283 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 O -0.268 6.268 23 C -0.095 4.095 24 C -0.175 4.175 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.113 0.887 28 H 0.140 0.860 29 H 0.149 0.851 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.143 0.857 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.076 -9.466 -8.553 12.926 hybrid contribution -0.610 0.672 0.592 1.084 sum -2.686 -8.794 -7.961 12.163 Atomic orbital electron populations 1.22985 0.78916 1.03326 1.01394 1.86012 1.21003 1.27447 1.89290 1.18976 0.92351 0.83826 0.98106 1.21208 0.99649 0.92440 1.09661 1.20872 0.94438 0.96926 0.94319 1.19775 0.93846 0.94436 1.01119 1.20573 0.94879 0.87764 0.90202 0.93395 1.22158 1.01057 0.96688 0.97761 1.21622 0.99419 0.95665 0.99092 1.22262 0.99354 0.98411 0.98160 1.19705 0.94590 0.79918 0.89407 0.96878 1.20993 1.35649 1.06544 0.93271 0.91837 1.25068 0.94813 0.94629 0.98245 1.70042 1.41724 1.21309 1.16255 0.86645 0.80554 0.80770 0.80294 1.20531 1.21146 1.19746 1.88378 1.51832 1.23388 1.63162 1.20777 0.99640 0.90937 0.98170 1.20248 0.91203 0.98191 1.07843 0.92873 0.92699 0.88710 0.85956 0.85084 0.92574 0.91829 0.93118 0.92650 0.92546 0.92496 0.92985 0.85652 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.61 10.50 -19.44 -0.20 -4.82 16 3 C 0.11 1.78 6.69 -39.22 -0.26 1.52 16 4 C -0.21 -3.41 9.04 -39.43 -0.36 -3.76 16 5 C -0.05 -0.88 9.35 -39.60 -0.37 -1.25 16 6 C -0.09 -1.73 4.98 -104.60 -0.52 -2.25 16 7 C 0.12 2.57 2.85 -27.84 -0.08 2.49 16 8 H 0.05 1.01 8.00 -51.93 -0.42 0.59 16 9 C -0.14 -2.44 5.40 -26.59 -0.14 -2.58 16 10 C -0.12 -2.12 6.03 -26.55 -0.16 -2.28 16 11 C -0.14 -3.03 5.36 -26.59 -0.14 -3.17 16 12 C 0.22 5.62 2.50 -27.84 -0.07 5.56 16 13 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 14 C -0.53 -14.77 8.79 -34.44 -0.30 -15.07 16 15 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 16 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 17 N -0.86 -25.42 12.84 55.43 0.71 -24.71 16 18 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 22 O -0.35 -8.87 8.75 -35.23 -0.31 -9.18 16 23 C -0.08 -1.28 9.66 -39.60 -0.38 -1.66 16 24 C -0.16 -2.44 9.99 -39.43 -0.39 -2.83 16 25 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 26 H 0.05 0.54 7.67 -51.93 -0.40 0.15 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.12 1.67 6.30 -52.49 -0.33 1.34 16 29 H 0.13 2.53 7.77 -52.49 -0.41 2.13 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.13 1.80 8.03 -52.48 -0.42 1.38 16 38 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 313.46 15.07 4.72 4.72 Total: -1.00 -31.08 313.46 -8.10 -39.18 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.72 Total: 0.32 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -2.29 Total: -21.88 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.71 Total: -24.71 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.51 Total: -13.99 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.08 -8.10 -39.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383995389.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.207 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds