Wall clock time and date at job start Mon Mar 30 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99628 * 2 1 4 4 C 1.38730 * 120.05544 * 359.73068 * 3 2 1 5 5 C 1.38148 * 119.94252 * 179.70001 * 4 3 2 6 6 C 1.38271 * 120.05423 * 0.59227 * 5 4 3 7 7 C 1.50697 * 119.94531 * 179.70226 * 6 5 4 8 8 H 1.09000 * 109.48177 * 160.00331 * 7 6 5 9 9 C 1.53093 * 109.48172 * 280.03450 * 7 6 5 10 10 C 1.53176 * 109.16406 * 177.58812 * 9 7 6 11 11 C 1.53173 * 109.03910 * 303.02495 * 10 9 7 12 12 C 1.53093 * 109.16640 * 56.97598 * 11 10 9 13 13 H 1.09003 * 109.47307 * 62.37516 * 12 11 10 14 14 C 1.50694 * 109.49057 * 182.40414 * 12 11 10 15 15 H 1.08002 * 120.00445 * 359.94820 * 14 12 11 16 16 C 1.37884 * 120.00017 * 179.97438 * 14 12 11 17 17 N 1.31514 * 119.99560 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99857 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47167 * 89.99923 * 18 16 14 20 20 H 1.48504 * 109.46855 * 209.99389 * 18 16 14 21 21 H 1.48495 * 109.47383 * 329.99390 * 18 16 14 22 22 O 1.42895 * 109.41482 * 302.39390 * 12 11 10 23 23 C 1.38267 * 120.11114 * 359.68094 * 6 5 4 24 24 C 1.38151 * 120.05677 * 0.02562 * 23 6 5 25 25 H 1.09002 * 109.47382 * 59.99787 * 1 2 3 26 26 H 1.09001 * 109.46938 * 299.99774 * 1 2 3 27 27 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.03088 * 359.97438 * 4 3 2 29 29 H 1.07993 * 119.97527 * 180.27495 * 5 4 3 30 30 H 1.09000 * 109.52292 * 297.50132 * 9 7 6 31 31 H 1.09000 * 109.52105 * 57.68642 * 9 7 6 32 32 H 1.08996 * 109.54659 * 183.15320 * 10 9 7 33 33 H 1.09009 * 109.61445 * 62.93184 * 10 9 7 34 34 H 1.09005 * 109.52004 * 297.06983 * 11 10 9 35 35 H 1.09001 * 109.52638 * 176.88663 * 11 10 9 36 36 H 0.97001 * 119.99291 * 180.02562 * 17 16 14 37 37 H 1.08003 * 119.97499 * 180.02562 * 23 6 5 38 38 H 1.07998 * 120.02823 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3751 -0.0056 5 6 1.9209 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 3.9859 5.0187 0.0002 8 1 5.0115 4.9041 0.3513 9 6 3.9931 5.5881 -1.4208 10 6 4.6357 6.9784 -1.4022 11 6 3.8679 7.8707 -0.4222 12 6 3.8655 7.2131 0.9603 13 1 4.8896 7.1275 1.3237 14 6 3.0616 8.0559 1.9166 15 1 2.5992 8.9697 1.5736 16 6 2.9169 7.6608 3.2296 17 7 3.4800 6.5481 3.6472 18 14 1.9199 8.7052 4.4148 19 1 0.5010 8.2679 4.3867 20 1 2.4596 8.5462 5.7891 21 1 2.0064 10.1315 4.0109 22 8 3.2827 5.9118 0.8663 23 6 4.0560 2.5171 0.0001 24 6 3.4313 1.2849 -0.0001 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2129 2.3201 -0.0105 29 1 1.3341 4.5114 0.0007 30 1 4.5666 4.9303 -2.0739 31 1 2.9696 5.6649 -1.7876 32 1 4.5937 7.4130 -2.4008 33 1 5.6750 6.8969 -1.0835 34 1 2.8417 7.9936 -0.7689 35 1 4.3518 8.8455 -0.3611 36 1 3.3779 6.2699 4.5709 37 1 5.1345 2.5752 0.0001 38 1 4.0209 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383995389.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:54 Heat of formation + Delta-G solvation = -88.360508 kcal Electronic energy + Delta-G solvation = -19810.785576 eV Core-core repulsion = 16810.299166 eV Total energy + Delta-G solvation = -3000.486411 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.15239 -39.95235 -38.13487 -34.92613 -34.09821 -32.82272 -31.99147 -30.21297 -28.23115 -27.27419 -25.08048 -23.65758 -23.53434 -21.91649 -20.79400 -19.09127 -18.67311 -17.28002 -17.01415 -16.61637 -16.46041 -16.17597 -15.77908 -15.27511 -15.25804 -14.61457 -14.56001 -14.40066 -14.06366 -13.63209 -13.38862 -12.98703 -12.86335 -12.77664 -12.53513 -12.49200 -12.11832 -11.99138 -11.78023 -11.74999 -11.60587 -11.27211 -10.84587 -10.55662 -9.92034 -9.74546 -8.99178 -8.13884 -6.34309 0.41264 0.47982 1.40229 1.41509 1.52106 2.39157 2.40625 2.78026 3.05777 3.57348 3.89836 3.97218 4.03822 4.13351 4.16935 4.33536 4.39743 4.40626 4.46789 4.49415 4.59366 4.60557 4.73370 4.77307 4.88131 4.98377 5.09750 5.13923 5.18784 5.24250 5.30963 5.33044 5.46507 5.55723 5.77798 5.80264 5.82714 6.22870 6.46241 6.68732 7.23577 7.42279 8.93602 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018760 B = 0.005961 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.186677 B = 4696.192319 C = 5676.696508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.113 3.887 4 C -0.211 4.211 5 C -0.067 4.067 6 C -0.117 4.117 7 C 0.119 3.881 8 H 0.035 0.965 9 C -0.130 4.130 10 C -0.115 4.115 11 C -0.137 4.137 12 C 0.215 3.785 13 H -0.021 1.021 14 C -0.551 4.551 15 H 0.065 0.935 16 C 0.026 3.974 17 N -0.896 5.896 18 Si 0.959 3.041 19 H -0.277 1.277 20 H -0.281 1.281 21 H -0.261 1.261 22 O -0.378 6.378 23 C -0.078 4.078 24 C -0.156 4.156 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.124 0.876 28 H 0.144 0.856 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.260 0.740 37 H 0.144 0.856 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.637 -10.056 -9.860 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.068 3.932 4 C -0.229 4.229 5 C -0.085 4.085 6 C -0.118 4.118 7 C 0.061 3.939 8 H 0.053 0.947 9 C -0.168 4.168 10 C -0.152 4.152 11 C -0.175 4.175 12 C 0.160 3.840 13 H -0.004 1.004 14 C -0.588 4.588 15 H 0.083 0.917 16 C -0.177 4.177 17 N -0.533 5.533 18 Si 0.783 3.217 19 H -0.203 1.203 20 H -0.206 1.206 21 H -0.185 1.185 22 O -0.298 6.298 23 C -0.096 4.096 24 C -0.175 4.175 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.142 0.858 28 H 0.162 0.838 29 H 0.129 0.871 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.162 0.838 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.693 -10.408 -9.622 14.427 hybrid contribution -0.446 0.843 0.894 1.307 sum -3.139 -9.565 -8.728 13.323 Atomic orbital electron populations 1.23327 0.76728 1.05579 1.01985 1.86016 1.23252 1.26346 1.88853 1.19125 0.92713 0.84333 0.97010 1.21365 1.00876 0.91683 1.08997 1.20805 0.94421 0.97268 0.96038 1.19784 0.94272 0.94312 1.03384 1.20766 0.93905 0.88126 0.91132 0.94672 1.22085 1.01506 0.97069 0.96108 1.21608 0.98857 0.95037 0.99737 1.22112 0.99880 0.99032 0.96433 1.19569 0.92168 0.80647 0.91642 1.00391 1.21443 1.35687 1.07232 0.94458 0.91719 1.25923 0.95852 0.95819 1.00087 1.70187 1.43385 1.23169 1.16552 0.85564 0.78706 0.79485 0.77906 1.20251 1.20613 1.18471 1.88264 1.52621 1.23822 1.65061 1.20970 1.00540 0.90525 0.97573 1.20564 0.91583 0.98661 1.06665 0.91771 0.92582 0.85758 0.83803 0.87065 0.89611 0.92040 0.89719 0.92310 0.92945 0.91922 0.93106 0.83847 0.83210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -8.60 10.50 -92.47 -0.97 -9.57 16 3 C 0.11 3.40 6.69 22.51 0.15 3.55 16 4 C -0.21 -6.63 9.04 22.37 0.20 -6.43 16 5 C -0.07 -2.52 9.35 22.26 0.21 -2.32 16 6 C -0.12 -4.48 4.98 -19.85 -0.10 -4.58 16 7 C 0.12 5.01 2.85 29.88 0.09 5.09 16 8 H 0.04 1.53 8.00 -2.39 -0.02 1.51 16 9 C -0.13 -4.45 5.40 30.68 0.17 -4.28 16 10 C -0.12 -3.89 6.03 30.71 0.19 -3.71 16 11 C -0.14 -5.77 5.36 30.68 0.16 -5.61 16 12 C 0.22 11.47 2.50 29.88 0.07 11.54 16 13 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 14 C -0.55 -31.75 8.79 25.60 0.23 -31.52 16 15 H 0.06 3.59 7.74 -2.91 -0.02 3.56 16 16 C 0.03 1.49 5.40 84.66 0.46 1.94 16 17 N -0.90 -54.92 12.84 21.45 0.28 -54.64 16 18 Si 0.96 44.62 29.54 68.60 2.03 46.64 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 22 O -0.38 -20.03 8.75 -148.98 -1.30 -21.33 16 23 C -0.08 -2.52 9.66 22.26 0.22 -2.30 16 24 C -0.16 -4.59 9.99 22.37 0.22 -4.37 16 25 H 0.06 1.00 7.65 -2.39 -0.02 0.98 16 26 H 0.06 0.98 7.67 -2.39 -0.02 0.97 16 27 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.14 3.74 6.30 -2.91 -0.02 3.72 16 29 H 0.11 4.52 7.77 -2.91 -0.02 4.50 16 30 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.14 3.96 8.03 -2.91 -0.02 3.93 16 38 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -68.98 313.46 4.43 -64.55 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 1.03 Total: 15.89 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 3.37 Total: -41.54 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.28 Total: -54.64 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -2.27 Total: -30.90 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.98 4.43 -64.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383995389.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.811 kcal (2) G-P(sol) polarization free energy of solvation -68.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds