Wall clock time and date at job start Mon Mar 30 2020 07:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00295 * 2 1 4 4 H 1.48495 * 109.47127 * 240.00474 * 3 2 1 5 5 H 1.48507 * 109.46953 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46843 * 120.00100 * 3 2 1 7 7 C 1.37874 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00157 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99907 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47057 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47162 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47523 * 180.02562 * 11 10 9 13 13 O 1.42893 * 109.47362 * 180.02562 * 12 11 10 14 14 C 1.42906 * 114.00063 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47095 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.47085 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.47301 * 179.97438 * 16 15 14 18 18 C 1.38238 * 119.99792 * 90.00016 * 17 16 15 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 269.97953 * 17 16 15 23 23 H 0.97005 * 119.99548 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47075 * 59.99959 * 9 7 2 25 25 H 1.08993 * 109.47283 * 300.00034 * 9 7 2 26 26 H 1.09001 * 109.47325 * 60.00573 * 10 9 7 27 27 H 1.09005 * 109.47513 * 300.00052 * 10 9 7 28 28 H 1.09005 * 109.46937 * 60.00101 * 11 10 9 29 29 H 1.08997 * 109.47194 * 300.00725 * 11 10 9 30 30 H 1.08997 * 109.47095 * 59.99821 * 12 11 10 31 31 H 1.09005 * 109.47328 * 300.00265 * 12 11 10 32 32 H 1.08992 * 109.47355 * 60.00058 * 14 13 12 33 33 H 1.08999 * 109.46534 * 299.99803 * 14 13 12 34 34 H 1.08995 * 109.47671 * 59.99699 * 15 14 13 35 35 H 1.09004 * 109.46984 * 299.99715 * 15 14 13 36 36 H 1.09005 * 109.47610 * 59.99944 * 16 15 14 37 37 H 1.09000 * 109.47256 * 299.99285 * 16 15 14 38 38 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 40 40 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 41 41 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 42 42 H 1.07999 * 119.99968 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 6 2.4743 -6.1500 -0.0018 13 8 1.7598 -7.3875 -0.0018 14 6 2.5998 -8.5437 -0.0018 15 6 1.7325 -9.8041 -0.0025 16 6 2.6318 -11.0419 -0.0031 17 6 1.7775 -12.2835 -0.0031 18 6 1.3854 -12.8526 -1.2003 19 6 0.6023 -13.9917 -1.2003 20 6 0.2118 -14.5621 -0.0032 21 6 0.5996 -13.9900 1.1940 22 6 1.3865 -12.8535 1.1940 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8725 -3.6048 0.8877 27 1 2.8712 -3.6040 -0.8923 28 1 0.8525 -5.0447 -0.8905 29 1 0.8544 -5.0449 0.8894 30 1 3.1016 -6.0923 0.8877 31 1 3.1004 -6.0924 -0.8923 32 1 3.2290 -8.5357 0.8881 33 1 3.2290 -8.5355 -0.8918 34 1 1.1035 -9.8120 -0.8926 35 1 1.1030 -9.8124 0.8873 36 1 3.2611 -11.0344 0.8869 37 1 3.2610 -11.0335 -0.8932 38 1 1.6908 -12.4072 -2.1356 39 1 0.2955 -14.4361 -2.1356 40 1 -0.3996 -15.4523 -0.0032 41 1 0.2909 -14.4330 2.1293 42 1 1.6936 -12.4093 2.1293 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385356777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:51 Heat of formation + Delta-G solvation = -63.988305 kcal Electronic energy + Delta-G solvation = -17850.131167 eV Core-core repulsion = 14986.534709 eV Total energy + Delta-G solvation = -2863.596458 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 262.167 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.62282 -38.03916 -35.14227 -34.26226 -32.32318 -31.18311 -30.67234 -28.58513 -26.02065 -24.50234 -22.87273 -22.32218 -21.71448 -20.97765 -19.98660 -17.15283 -16.42289 -16.26112 -16.18554 -15.52537 -15.43462 -14.58009 -14.55729 -14.34966 -13.73699 -13.40848 -13.38304 -13.26511 -12.41453 -12.28384 -12.23804 -11.78991 -11.62663 -11.45869 -11.14404 -11.12682 -10.95988 -10.90113 -10.59290 -10.53677 -10.37240 -9.64744 -9.43518 -9.29027 -9.21818 -9.04433 -8.97461 -8.31301 -5.96351 -3.98875 1.04971 1.10323 3.35199 3.39354 3.41670 3.43889 3.78596 4.46993 4.49989 4.50666 4.71205 4.80942 4.82401 5.09845 5.13030 5.13659 5.21414 5.35685 5.38819 5.39388 5.42449 5.43080 5.60811 5.72939 5.75117 5.80248 5.90923 6.01456 6.14297 6.16865 6.20174 6.21845 6.34799 6.50831 6.71025 6.81348 6.95011 7.13079 7.41009 7.71835 7.87333 8.04328 8.46449 9.08226 9.64766 11.14958 Molecular weight = 262.17amu Principal moments of inertia in cm(-1) A = 0.061952 B = 0.002022 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.853537 B =13843.801512 C =13959.354281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.117 4.117 12 C 0.064 3.936 13 O -0.391 6.391 14 C 0.061 3.939 15 C -0.112 4.112 16 C -0.079 4.079 17 C -0.078 4.078 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.127 4.127 21 C -0.119 4.119 22 C -0.117 4.117 23 H 0.261 0.739 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.063 -29.043 -0.007 29.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.012 4.012 13 O -0.310 6.310 14 C -0.015 4.015 15 C -0.150 4.150 16 C -0.117 4.117 17 C -0.078 4.078 18 C -0.135 4.135 19 C -0.137 4.137 20 C -0.145 4.145 21 C -0.137 4.137 22 C -0.135 4.135 23 H 0.070 0.930 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.709 -28.925 -0.007 29.162 hybrid contribution 0.699 0.935 0.000 1.167 sum 4.408 -27.990 -0.007 28.335 Atomic orbital electron populations 1.69963 1.06044 1.26653 1.50825 1.25039 0.94866 0.99249 0.95407 0.86652 0.79565 0.83161 0.78567 1.20274 1.21293 1.20278 1.21240 0.92986 0.91168 1.50594 0.92773 1.19089 0.94002 0.91170 0.97337 1.21579 0.99185 0.93495 1.00276 1.21641 0.98108 0.92933 1.02749 1.22683 0.95372 0.83572 0.99619 1.87888 1.34078 1.13682 1.95399 1.22436 0.93227 0.85971 0.99915 1.21478 0.98316 0.91402 1.03783 1.20537 0.96800 0.91106 1.03221 1.19879 0.98308 0.96396 0.93260 1.21094 0.98536 0.96177 0.97695 1.21159 0.98202 0.96219 0.98121 1.21156 1.00476 1.00214 0.92685 1.21160 0.98180 0.96238 0.98121 1.21093 0.98509 0.96207 0.97694 0.92970 0.96533 0.96526 0.93354 0.93344 0.91710 0.91714 0.93681 0.93690 0.93602 0.93611 0.90942 0.90938 0.90727 0.90722 0.86018 0.86118 0.86238 0.86117 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C -0.12 -2.13 5.58 -26.73 -0.15 -2.28 16 12 C 0.06 0.98 5.94 37.16 0.22 1.20 16 13 O -0.39 -5.95 10.34 -35.23 -0.36 -6.32 16 14 C 0.06 0.69 5.94 37.16 0.22 0.91 16 15 C -0.11 -1.10 5.57 -26.74 -0.15 -1.25 16 16 C -0.08 -0.62 5.34 -27.88 -0.15 -0.77 16 17 C -0.08 -0.67 5.13 -104.62 -0.54 -1.21 16 18 C -0.12 -0.97 9.70 -39.58 -0.38 -1.36 16 19 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 20 C -0.13 -0.96 10.05 -39.58 -0.40 -1.36 16 21 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 22 C -0.12 -0.97 9.70 -39.58 -0.38 -1.36 16 23 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 37 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 38 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 39 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 352.45 15.07 5.31 5.31 Total: -1.00 -31.69 352.45 -10.10 -41.79 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -7.57 Total: -5.02 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: -3.19 Total: -25.98 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.74 Total: -26.72 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.36 Total: -6.32 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.69 -10.10 -41.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385356777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.196 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds