Wall clock time and date at job start Mon Mar 30 2020 07:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00295 * 2 1 4 4 H 1.48495 * 109.47127 * 240.00474 * 3 2 1 5 5 H 1.48507 * 109.46953 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46843 * 120.00100 * 3 2 1 7 7 C 1.37874 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00157 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99907 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47057 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47162 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47523 * 180.02562 * 11 10 9 13 13 O 1.42893 * 109.47362 * 180.02562 * 12 11 10 14 14 C 1.42906 * 114.00063 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47095 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.47085 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.47301 * 179.97438 * 16 15 14 18 18 C 1.38238 * 119.99792 * 90.00016 * 17 16 15 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 269.97953 * 17 16 15 23 23 H 0.97005 * 119.99548 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47075 * 59.99959 * 9 7 2 25 25 H 1.08993 * 109.47283 * 300.00034 * 9 7 2 26 26 H 1.09001 * 109.47325 * 60.00573 * 10 9 7 27 27 H 1.09005 * 109.47513 * 300.00052 * 10 9 7 28 28 H 1.09005 * 109.46937 * 60.00101 * 11 10 9 29 29 H 1.08997 * 109.47194 * 300.00725 * 11 10 9 30 30 H 1.08997 * 109.47095 * 59.99821 * 12 11 10 31 31 H 1.09005 * 109.47328 * 300.00265 * 12 11 10 32 32 H 1.08992 * 109.47355 * 60.00058 * 14 13 12 33 33 H 1.08999 * 109.46534 * 299.99803 * 14 13 12 34 34 H 1.08995 * 109.47671 * 59.99699 * 15 14 13 35 35 H 1.09004 * 109.46984 * 299.99715 * 15 14 13 36 36 H 1.09005 * 109.47610 * 59.99944 * 16 15 14 37 37 H 1.09000 * 109.47256 * 299.99285 * 16 15 14 38 38 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 40 40 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 41 41 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 42 42 H 1.07999 * 119.99968 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 6 2.4743 -6.1500 -0.0018 13 8 1.7598 -7.3875 -0.0018 14 6 2.5998 -8.5437 -0.0018 15 6 1.7325 -9.8041 -0.0025 16 6 2.6318 -11.0419 -0.0031 17 6 1.7775 -12.2835 -0.0031 18 6 1.3854 -12.8526 -1.2003 19 6 0.6023 -13.9917 -1.2003 20 6 0.2118 -14.5621 -0.0032 21 6 0.5996 -13.9900 1.1940 22 6 1.3865 -12.8535 1.1940 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8725 -3.6048 0.8877 27 1 2.8712 -3.6040 -0.8923 28 1 0.8525 -5.0447 -0.8905 29 1 0.8544 -5.0449 0.8894 30 1 3.1016 -6.0923 0.8877 31 1 3.1004 -6.0924 -0.8923 32 1 3.2290 -8.5357 0.8881 33 1 3.2290 -8.5355 -0.8918 34 1 1.1035 -9.8120 -0.8926 35 1 1.1030 -9.8124 0.8873 36 1 3.2611 -11.0344 0.8869 37 1 3.2610 -11.0335 -0.8932 38 1 1.6908 -12.4072 -2.1356 39 1 0.2955 -14.4361 -2.1356 40 1 -0.3996 -15.4523 -0.0032 41 1 0.2909 -14.4330 2.1293 42 1 1.6936 -12.4093 2.1293 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385356777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:50 Heat of formation + Delta-G solvation = -79.468686 kcal Electronic energy + Delta-G solvation = -17850.802447 eV Core-core repulsion = 14986.534709 eV Total energy + Delta-G solvation = -2864.267738 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 262.167 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.20521 -39.12865 -36.56380 -35.43715 -34.24048 -31.74392 -31.56964 -30.23625 -27.08289 -26.09086 -23.44022 -23.39642 -23.06531 -21.81872 -21.54837 -18.43120 -17.80677 -17.43033 -17.21355 -16.51918 -16.37287 -16.06780 -15.71517 -15.43346 -14.68235 -14.46303 -14.21834 -14.14023 -13.88216 -13.70242 -13.48573 -12.91946 -12.83502 -12.82523 -12.39234 -12.37130 -12.36271 -11.96734 -11.95208 -11.67038 -11.62158 -11.41965 -11.33074 -11.08543 -10.55403 -10.51042 -9.79972 -9.58490 -8.19523 -6.31457 0.46092 0.52144 1.40237 1.43992 1.51919 2.40987 2.65710 2.95664 3.13129 3.81840 3.90904 4.06495 4.13220 4.14163 4.19897 4.30624 4.38364 4.42282 4.46634 4.49021 4.55602 4.61879 4.67386 4.71913 4.78126 4.81740 4.89956 5.10538 5.16932 5.17565 5.23238 5.24099 5.27907 5.32102 5.53105 5.60039 5.65124 5.75156 5.75295 5.85737 6.15370 6.24326 6.32952 6.85833 7.37865 8.92318 Molecular weight = 262.17amu Principal moments of inertia in cm(-1) A = 0.061952 B = 0.002022 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.853537 B =13843.801512 C =13959.354281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.021 3.979 10 C -0.094 4.094 11 C -0.111 4.111 12 C 0.072 3.928 13 O -0.415 6.415 14 C 0.056 3.944 15 C -0.105 4.105 16 C -0.071 4.071 17 C -0.093 4.093 18 C -0.131 4.131 19 C -0.129 4.129 20 C -0.136 4.136 21 C -0.129 4.129 22 C -0.131 4.131 23 H 0.264 0.736 24 H -0.011 1.011 25 H -0.010 1.010 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.771 -29.655 -0.008 30.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.081 0.919 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.149 4.149 12 C -0.004 4.004 13 O -0.335 6.335 14 C -0.020 4.020 15 C -0.143 4.143 16 C -0.108 4.108 17 C -0.093 4.093 18 C -0.149 4.149 19 C -0.147 4.147 20 C -0.154 4.154 21 C -0.147 4.147 22 C -0.149 4.149 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.008 0.992 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.431 -29.559 -0.008 30.054 hybrid contribution 0.103 1.052 0.001 1.057 sum 5.534 -28.507 -0.007 29.039 Atomic orbital electron populations 1.70110 1.07925 1.27859 1.51631 1.26062 0.95829 1.03620 0.94721 0.85446 0.78205 0.77793 0.79261 1.19035 1.20884 1.19044 1.21712 0.93684 0.92338 1.50617 0.91857 1.19030 0.94550 0.93302 0.94719 1.21358 0.98024 0.92723 1.01092 1.21473 0.98389 0.93155 1.01857 1.22482 0.94234 0.82739 1.00963 1.87844 1.35545 1.14501 1.95630 1.22674 0.93323 0.84806 1.01219 1.21415 0.98306 0.91829 1.02759 1.20478 0.96420 0.89720 1.04223 1.20041 0.98835 0.96860 0.93563 1.21330 0.98866 0.96624 0.98100 1.21452 0.98021 0.96178 0.99069 1.21470 1.00492 1.00829 0.92593 1.21453 0.98001 0.96197 0.99070 1.21329 0.98839 0.96653 0.98099 0.92774 0.99217 0.99208 0.92431 0.92422 0.92672 0.92675 0.92301 0.92313 0.92231 0.92241 0.91983 0.91980 0.89713 0.89708 0.85162 0.84507 0.84411 0.84506 0.85162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.31 13.29 21.45 0.28 -58.02 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -31.75 9.11 25.60 0.23 -31.51 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.15 4.97 29.85 0.15 1.30 16 10 C -0.09 -3.94 5.15 30.59 0.16 -3.79 16 11 C -0.11 -4.03 5.58 30.59 0.17 -3.86 16 12 C 0.07 2.08 5.94 71.98 0.43 2.51 16 13 O -0.41 -12.14 10.34 -148.98 -1.54 -13.68 16 14 C 0.06 1.15 5.94 71.98 0.43 1.58 16 15 C -0.11 -1.96 5.57 30.59 0.17 -1.79 16 16 C -0.07 -1.01 5.34 29.85 0.16 -0.85 16 17 C -0.09 -1.52 5.13 -19.86 -0.10 -1.62 16 18 C -0.13 -2.07 9.70 22.27 0.22 -1.86 16 19 C -0.13 -1.87 10.05 22.27 0.22 -1.64 16 20 C -0.14 -1.89 10.05 22.27 0.22 -1.66 16 21 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 22 C -0.13 -2.07 9.70 22.27 0.22 -1.86 16 23 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 24 H -0.01 -0.63 8.14 -2.38 -0.02 -0.64 16 25 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 26 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 28 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.06 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.08 1.02 8.09 -2.38 -0.02 1.00 16 37 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 38 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 41 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -68.08 352.45 5.07 -63.01 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.94 Total: 8.40 kcal Atomic # 6 Polarization: -49.87 SS G_CDS: 3.36 Total: -46.52 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.28 Total: -58.02 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -1.54 Total: -13.68 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -68.08 5.07 -63.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385356777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.460 kcal (2) G-P(sol) polarization free energy of solvation -68.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds