Wall clock time and date at job start Mon Mar 30 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21251 * 119.99984 * 2 1 4 4 C 1.47185 * 120.00053 * 179.97438 * 2 1 3 5 5 C 1.39880 * 120.14525 * 359.97304 * 4 2 1 6 6 C 1.37883 * 119.93554 * 180.02562 * 5 4 2 7 7 C 1.38335 * 120.23803 * 359.97438 * 6 5 4 8 8 C 1.38845 * 120.29424 * 359.97438 * 7 6 5 9 9 O 1.35910 * 119.97193 * 180.02562 * 8 7 6 10 10 C 1.42898 * 116.99978 * 0.02653 * 9 8 7 11 11 C 1.53000 * 109.47279 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47285 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.46941 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.46943 * 180.02562 * 13 12 11 15 15 H 1.07992 * 119.99877 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99950 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99982 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99928 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46823 * 60.00147 * 18 16 14 20 20 H 1.48503 * 109.46987 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47088 * 299.99979 * 18 16 14 22 22 C 1.38425 * 120.05875 * 0.02562 * 8 7 6 23 23 H 1.08997 * 109.46968 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47162 * 300.00124 * 1 2 3 25 25 H 1.08989 * 109.47163 * 60.00326 * 1 2 3 26 26 H 1.07996 * 120.02606 * 0.02562 * 5 4 2 27 27 H 1.08001 * 119.88482 * 179.97438 * 6 5 4 28 28 H 1.07997 * 119.85220 * 180.02562 * 7 6 5 29 29 H 1.08997 * 109.47213 * 299.99513 * 10 9 8 30 30 H 1.08994 * 109.47298 * 59.99908 * 10 9 8 31 31 H 1.09002 * 109.47176 * 300.00175 * 11 10 9 32 32 H 1.09007 * 109.47143 * 59.99934 * 11 10 9 33 33 H 1.08994 * 109.47030 * 299.99930 * 12 11 10 34 34 H 1.09002 * 109.46819 * 60.00574 * 12 11 10 35 35 H 1.08999 * 109.47622 * 300.00017 * 13 12 11 36 36 H 1.08999 * 109.47471 * 60.00149 * 13 12 11 37 37 H 0.97004 * 119.99423 * 180.02562 * 17 16 14 38 38 H 1.08006 * 120.11895 * 179.70484 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2747 0.0006 5 6 1.5466 -2.4878 0.0017 6 6 2.2404 -3.6794 0.0027 7 6 3.6238 -3.6801 0.0022 8 6 4.3248 -2.4815 0.0000 9 8 5.6838 -2.4899 -0.0011 10 6 6.3248 -3.7670 -0.0004 11 6 7.8428 -3.5759 -0.0024 12 6 8.5291 -4.9433 -0.0011 13 6 10.0470 -4.7521 -0.0025 14 6 10.7230 -6.0991 -0.0018 15 1 10.1293 -7.0011 -0.0010 16 6 12.0994 -6.1796 -0.0023 17 7 12.8225 -5.0810 -0.0039 18 14 12.9373 -7.8492 -0.0008 19 1 12.5331 -8.6069 -1.2123 20 1 14.4107 -7.6636 -0.0022 21 1 12.5341 -8.6042 1.2128 22 6 3.6406 -1.2782 -0.0011 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 0.4667 -2.4911 0.0017 27 1 1.7020 -4.6156 0.0040 28 1 4.1609 -4.6170 0.0026 29 1 6.0293 -4.3214 0.8903 30 1 6.0278 -4.3230 -0.8896 31 1 8.1380 -3.0216 -0.8934 32 1 8.1402 -3.0197 0.8866 33 1 8.2338 -5.4971 0.8900 34 1 8.2318 -5.4998 -0.8900 35 1 10.3427 -4.1981 -0.8934 36 1 10.3440 -4.1957 0.8865 37 1 13.7908 -5.1377 -0.0046 38 1 4.1849 -0.3453 0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385822410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:47 Heat of formation + Delta-G solvation = -73.507321 kcal Electronic energy + Delta-G solvation = -18079.859882 eV Core-core repulsion = 15080.017554 eV Total energy + Delta-G solvation = -2999.842328 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.55698 -39.36457 -37.36761 -34.80811 -32.53814 -31.97624 -31.06541 -29.36475 -28.61048 -25.36674 -23.91518 -22.63496 -21.86751 -20.22945 -19.94004 -18.07409 -16.48438 -16.34793 -16.19898 -16.11715 -15.69272 -15.28492 -14.94186 -14.47184 -14.14045 -13.99775 -13.42309 -12.86836 -12.83541 -12.57156 -12.42306 -12.20549 -11.77777 -11.70251 -11.60944 -11.10850 -10.93725 -10.62596 -10.51564 -10.48989 -10.08808 -9.74033 -9.38842 -9.31533 -9.10875 -8.43479 -8.36175 -6.01182 -4.04160 0.35053 1.16511 2.12829 3.07526 3.31979 3.36629 3.38727 3.52587 3.81017 4.44469 4.49098 4.59653 4.62869 4.82408 4.96757 5.02714 5.12578 5.12714 5.23398 5.31343 5.34373 5.49710 5.55585 5.64584 5.94840 5.94889 6.02266 6.05171 6.09585 6.34722 6.43110 6.66003 6.81046 7.04098 7.19913 7.34944 7.65193 7.79081 7.98379 8.39882 9.02710 9.59879 11.10077 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.055440 B = 0.002583 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.925534 B =10836.327402 C =11304.900338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.396 3.604 3 O -0.456 6.456 4 C -0.137 4.137 5 C -0.120 4.120 6 C -0.092 4.092 7 C -0.180 4.180 8 C 0.128 3.872 9 O -0.312 6.312 10 C 0.058 3.942 11 C -0.118 4.118 12 C -0.107 4.107 13 C 0.021 3.979 14 C -0.523 4.523 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.098 4.098 23 H 0.085 0.915 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.135 0.865 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.261 0.739 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.144 5.017 0.015 26.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.274 3.726 3 O -0.331 6.331 4 C -0.138 4.138 5 C -0.139 4.139 6 C -0.110 4.110 7 C -0.198 4.198 8 C 0.082 3.918 9 O -0.226 6.226 10 C -0.016 4.016 11 C -0.155 4.155 12 C -0.144 4.144 13 C -0.016 4.016 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.117 4.117 23 H 0.104 0.896 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.152 0.848 27 H 0.149 0.851 28 H 0.153 0.847 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.035 0.965 36 H 0.036 0.964 37 H 0.071 0.929 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -25.485 5.793 0.015 26.135 hybrid contribution 0.514 -1.322 0.001 1.418 sum -24.971 4.471 0.016 25.368 Atomic orbital electron populations 1.22232 0.93558 1.04938 1.04998 1.22507 0.91697 0.87478 0.70928 1.90558 1.72106 1.34339 1.36104 1.20275 0.93383 0.95027 1.05164 1.21345 1.00021 0.91329 1.01166 1.20928 0.93404 0.98275 0.98396 1.21634 0.95547 0.97735 1.04920 1.18979 0.83552 0.93628 0.95685 1.86155 1.15241 1.33398 1.87756 1.23141 0.94712 0.82660 1.01097 1.21712 0.89727 1.00728 1.03368 1.21583 0.99297 0.93039 1.00504 1.19086 0.87916 0.97111 0.97450 1.21208 0.91389 0.92671 1.50869 0.92744 1.25041 0.97645 0.96519 0.95317 1.69962 1.05702 1.27109 1.50623 0.86645 0.78335 0.84343 0.78590 1.20248 1.21267 1.20242 1.20689 0.92795 0.97217 1.01007 0.89636 0.88703 0.88700 0.84825 0.85095 0.84682 0.92030 0.92035 0.91211 0.91217 0.93127 0.93125 0.96452 0.96446 0.92901 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.06 10.19 36.01 0.37 -0.70 16 2 C 0.40 3.88 7.23 -30.68 -0.22 3.66 16 3 O -0.46 -6.16 17.09 5.58 0.10 -6.07 16 4 C -0.14 -1.42 5.87 -105.08 -0.62 -2.03 16 5 C -0.12 -0.95 9.45 -39.10 -0.37 -1.32 16 6 C -0.09 -0.77 10.02 -39.68 -0.40 -1.17 16 7 C -0.18 -1.91 9.04 -39.32 -0.36 -2.27 16 8 C 0.13 1.66 6.68 -39.29 -0.26 1.40 16 9 O -0.31 -4.65 10.13 -19.46 -0.20 -4.84 16 10 C 0.06 0.81 4.74 37.16 0.18 0.99 16 11 C -0.12 -1.99 5.58 -26.73 -0.15 -2.13 16 12 C -0.11 -2.11 5.15 -26.73 -0.14 -2.25 16 13 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 14 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 18 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.10 -1.24 9.54 -38.94 -0.37 -1.61 16 23 H 0.08 0.27 5.60 -51.93 -0.29 -0.02 16 24 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.13 0.61 5.92 -52.49 -0.31 0.30 16 27 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 28 H 0.14 1.29 6.28 -52.49 -0.33 0.96 16 29 H 0.06 0.78 7.66 -51.93 -0.40 0.38 16 30 H 0.06 0.78 7.66 -51.93 -0.40 0.38 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.14 1.87 7.65 -52.48 -0.40 1.47 16 LS Contribution 324.39 15.07 4.89 4.89 Total: -1.00 -32.55 324.39 -7.86 -40.40 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -5.47 Total: -4.07 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -2.89 Total: -20.60 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.10 Total: -10.91 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.55 -7.86 -40.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385822410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.103 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds