Wall clock time and date at job start Mon Mar 30 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21251 * 119.99984 * 2 1 4 4 C 1.47185 * 120.00053 * 179.97438 * 2 1 3 5 5 C 1.39880 * 120.14525 * 359.97304 * 4 2 1 6 6 C 1.37883 * 119.93554 * 180.02562 * 5 4 2 7 7 C 1.38335 * 120.23803 * 359.97438 * 6 5 4 8 8 C 1.38845 * 120.29424 * 359.97438 * 7 6 5 9 9 O 1.35910 * 119.97193 * 180.02562 * 8 7 6 10 10 C 1.42898 * 116.99978 * 0.02653 * 9 8 7 11 11 C 1.53000 * 109.47279 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47285 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.46941 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.46943 * 180.02562 * 13 12 11 15 15 H 1.07992 * 119.99877 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99950 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99982 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99928 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46823 * 60.00147 * 18 16 14 20 20 H 1.48503 * 109.46987 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47088 * 299.99979 * 18 16 14 22 22 C 1.38425 * 120.05875 * 0.02562 * 8 7 6 23 23 H 1.08997 * 109.46968 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47162 * 300.00124 * 1 2 3 25 25 H 1.08989 * 109.47163 * 60.00326 * 1 2 3 26 26 H 1.07996 * 120.02606 * 0.02562 * 5 4 2 27 27 H 1.08001 * 119.88482 * 179.97438 * 6 5 4 28 28 H 1.07997 * 119.85220 * 180.02562 * 7 6 5 29 29 H 1.08997 * 109.47213 * 299.99513 * 10 9 8 30 30 H 1.08994 * 109.47298 * 59.99908 * 10 9 8 31 31 H 1.09002 * 109.47176 * 300.00175 * 11 10 9 32 32 H 1.09007 * 109.47143 * 59.99934 * 11 10 9 33 33 H 1.08994 * 109.47030 * 299.99930 * 12 11 10 34 34 H 1.09002 * 109.46819 * 60.00574 * 12 11 10 35 35 H 1.08999 * 109.47622 * 300.00017 * 13 12 11 36 36 H 1.08999 * 109.47471 * 60.00149 * 13 12 11 37 37 H 0.97004 * 119.99423 * 180.02562 * 17 16 14 38 38 H 1.08006 * 120.11895 * 179.70484 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2747 0.0006 5 6 1.5466 -2.4878 0.0017 6 6 2.2404 -3.6794 0.0027 7 6 3.6238 -3.6801 0.0022 8 6 4.3248 -2.4815 0.0000 9 8 5.6838 -2.4899 -0.0011 10 6 6.3248 -3.7670 -0.0004 11 6 7.8428 -3.5759 -0.0024 12 6 8.5291 -4.9433 -0.0011 13 6 10.0470 -4.7521 -0.0025 14 6 10.7230 -6.0991 -0.0018 15 1 10.1293 -7.0011 -0.0010 16 6 12.0994 -6.1796 -0.0023 17 7 12.8225 -5.0810 -0.0039 18 14 12.9373 -7.8492 -0.0008 19 1 12.5331 -8.6069 -1.2123 20 1 14.4107 -7.6636 -0.0022 21 1 12.5341 -8.6042 1.2128 22 6 3.6406 -1.2782 -0.0011 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 0.4667 -2.4911 0.0017 27 1 1.7020 -4.6156 0.0040 28 1 4.1609 -4.6170 0.0026 29 1 6.0293 -4.3214 0.8903 30 1 6.0278 -4.3230 -0.8896 31 1 8.1380 -3.0216 -0.8934 32 1 8.1402 -3.0197 0.8866 33 1 8.2338 -5.4971 0.8900 34 1 8.2318 -5.4998 -0.8900 35 1 10.3427 -4.1981 -0.8934 36 1 10.3440 -4.1957 0.8865 37 1 13.7908 -5.1377 -0.0046 38 1 4.1849 -0.3453 0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385822410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:47 Heat of formation + Delta-G solvation = -92.387285 kcal Electronic energy + Delta-G solvation = -18080.678579 eV Core-core repulsion = 15080.017554 eV Total energy + Delta-G solvation = -3000.661025 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.40578 -40.26757 -38.27534 -36.50714 -34.45435 -32.72428 -32.00551 -30.58536 -29.66189 -26.97011 -25.01908 -23.45083 -23.33494 -21.80904 -20.84400 -18.93216 -18.44407 -17.34169 -17.30865 -16.99809 -16.53771 -16.49237 -16.06039 -15.74851 -15.58123 -14.72193 -14.58641 -14.32336 -13.92248 -13.71960 -13.33628 -13.22467 -13.14056 -12.93797 -12.66449 -12.64018 -12.41650 -12.27080 -11.88931 -11.83570 -11.41765 -11.36755 -11.16226 -10.84668 -10.55903 -10.10291 -9.29476 -8.20592 -6.32488 -0.42965 0.38641 1.38135 1.40064 1.43558 1.51467 2.09848 2.41294 2.75720 3.11164 3.12507 3.74894 3.91522 3.93970 3.98419 4.04454 4.16077 4.27677 4.31029 4.47660 4.51440 4.54912 4.67674 4.76661 4.83515 4.87970 5.07065 5.08063 5.21955 5.22437 5.27320 5.28713 5.39797 5.51287 5.70412 5.72536 5.84339 6.22440 6.38363 6.49208 6.85149 7.37101 8.91281 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.055440 B = 0.002583 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.925534 B =10836.327402 C =11304.900338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.394 3.606 3 O -0.508 6.508 4 C -0.151 4.151 5 C -0.099 4.099 6 C -0.087 4.087 7 C -0.182 4.182 8 C 0.098 3.902 9 O -0.339 6.339 10 C 0.068 3.932 11 C -0.112 4.112 12 C -0.092 4.092 13 C 0.020 3.980 14 C -0.544 4.544 15 H 0.065 0.935 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.265 1.265 20 H -0.285 1.285 21 H -0.265 1.265 22 C -0.127 4.127 23 H 0.115 0.885 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.179 0.821 27 H 0.170 0.830 28 H 0.147 0.853 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.062 0.938 35 H -0.011 1.011 36 H -0.011 1.011 37 H 0.263 0.737 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.448 2.331 0.019 29.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.276 3.724 3 O -0.387 6.387 4 C -0.152 4.152 5 C -0.117 4.117 6 C -0.104 4.104 7 C -0.200 4.200 8 C 0.053 3.947 9 O -0.254 6.254 10 C -0.007 4.007 11 C -0.150 4.150 12 C -0.129 4.129 13 C -0.017 4.017 14 C -0.582 4.582 15 H 0.083 0.917 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.792 3.208 19 H -0.190 1.190 20 H -0.211 1.211 21 H -0.190 1.190 22 C -0.147 4.147 23 H 0.134 0.866 24 H 0.124 0.876 25 H 0.124 0.876 26 H 0.196 0.804 27 H 0.188 0.812 28 H 0.165 0.835 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.072 0.928 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -28.826 3.093 0.019 28.992 hybrid contribution 1.466 -0.446 0.000 1.532 sum -27.360 2.647 0.019 27.488 Atomic orbital electron populations 1.22280 0.89324 1.07250 1.05990 1.23264 0.93875 0.86419 0.68892 1.90546 1.73520 1.35860 1.38735 1.20566 0.92473 0.96753 1.05396 1.21850 1.02112 0.89824 0.97892 1.21428 0.92481 1.00063 0.96447 1.21891 0.96882 0.96981 1.04280 1.19174 0.82697 0.94799 0.98005 1.86076 1.16891 1.33739 1.88700 1.22937 0.92245 0.82801 1.02677 1.21507 0.92331 0.98745 1.02379 1.21335 0.95188 0.94870 1.01545 1.19030 0.92188 0.95697 0.94755 1.21701 0.92126 0.93828 1.50530 0.91655 1.26067 0.98602 1.00860 0.94755 1.70114 1.06041 1.29793 1.51682 0.85452 0.76909 0.79076 0.79316 1.18969 1.21073 1.18957 1.20710 0.94315 0.96383 1.03243 0.86644 0.87568 0.87567 0.80372 0.81230 0.83494 0.90387 0.90394 0.92297 0.92307 0.91970 0.91966 0.99234 0.99226 0.92803 0.86799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 10.19 71.24 0.73 -0.69 16 2 C 0.39 7.43 7.23 28.04 0.20 7.64 16 3 O -0.51 -14.43 17.09 -2.94 -0.05 -14.48 16 4 C -0.15 -2.96 5.87 -20.16 -0.12 -3.08 16 5 C -0.10 -1.17 9.45 22.58 0.21 -0.96 16 6 C -0.09 -1.09 10.02 22.21 0.22 -0.86 16 7 C -0.18 -3.46 9.04 22.44 0.20 -3.26 16 8 C 0.10 2.58 6.68 22.46 0.15 2.73 16 9 O -0.34 -10.48 10.13 -92.54 -0.94 -11.41 16 10 C 0.07 1.85 4.74 71.98 0.34 2.20 16 11 C -0.11 -3.87 5.58 30.59 0.17 -3.70 16 12 C -0.09 -3.64 5.15 30.59 0.16 -3.48 16 13 C 0.02 1.09 4.97 29.85 0.15 1.24 16 14 C -0.54 -30.99 9.11 25.60 0.23 -30.76 16 15 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 16 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 17 N -0.94 -57.97 13.29 21.45 0.28 -57.69 16 18 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 19 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 21 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 22 C -0.13 -3.39 9.54 22.68 0.22 -3.18 16 23 H 0.12 0.11 5.60 -2.39 -0.01 0.10 16 24 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.18 0.47 5.92 -2.91 -0.02 0.45 16 27 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 28 H 0.15 2.38 6.28 -2.91 -0.02 2.36 16 29 H 0.08 1.86 7.66 -2.39 -0.02 1.84 16 30 H 0.08 1.86 7.66 -2.39 -0.02 1.84 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 35 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 36 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 37 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 38 H 0.11 3.48 7.65 -2.91 -0.02 3.46 16 Total: -1.00 -75.12 324.39 5.69 -69.42 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: 1.04 Total: 3.92 kcal Atomic # 6 Polarization: -39.34 SS G_CDS: 3.33 Total: -36.01 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.28 Total: -57.69 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.99 Total: -25.89 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -75.12 5.69 -69.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385822410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.964 kcal (2) G-P(sol) polarization free energy of solvation -75.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds