Wall clock time and date at job start Mon Mar 30 2020 06:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00235 * 2 1 4 4 H 1.48505 * 109.46845 * 240.00073 * 3 2 1 5 5 H 1.48498 * 109.47042 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47304 * 120.00105 * 3 2 1 7 7 C 1.37882 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99975 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99780 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.49533 * 299.96912 * 9 7 2 11 11 C 1.53098 * 109.47907 * 179.97438 * 9 7 2 12 12 C 1.53180 * 109.16075 * 297.62884 * 11 9 7 13 13 C 1.53175 * 109.03606 * 303.01560 * 12 11 9 14 14 C 1.53092 * 109.16344 * 56.98567 * 13 12 11 15 15 H 1.09000 * 109.48212 * 62.37239 * 14 13 12 16 16 C 1.50699 * 109.48159 * 182.40725 * 14 13 12 17 17 C 1.34674 * 126.59216 * 84.96659 * 16 14 13 18 18 N 1.34122 * 108.02124 * 179.97438 * 17 16 14 19 19 C 1.30500 * 109.25669 * 359.97438 * 18 17 16 20 20 N 1.35040 * 108.69673 * 359.77001 * 19 18 17 21 21 C 1.46508 * 126.39383 * 180.26532 * 20 19 18 22 22 C 1.52998 * 117.49885 * 8.86923 * 21 20 19 23 23 C 1.53002 * 117.49973 * 300.20859 * 21 20 19 24 24 O 1.42905 * 109.48225 * 60.00171 * 9 7 2 25 25 H 0.96998 * 119.99677 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.52270 * 177.72129 * 11 9 7 27 27 H 1.08995 * 109.57012 * 57.55977 * 11 9 7 28 28 H 1.09005 * 109.54069 * 183.15152 * 12 11 9 29 29 H 1.08996 * 109.62096 * 62.93059 * 12 11 9 30 30 H 1.09004 * 109.52714 * 297.07587 * 13 12 11 31 31 H 1.09001 * 109.57654 * 176.92317 * 13 12 11 32 32 H 1.08005 * 125.98463 * 359.96510 * 17 16 14 33 33 H 1.08001 * 125.64663 * 180.02562 * 19 18 17 34 34 H 1.08998 * 115.54998 * 154.53905 * 21 20 19 35 35 H 1.09004 * 117.49956 * 0.02562 * 22 21 20 36 36 H 1.08995 * 117.49812 * 145.01800 * 22 21 20 37 37 H 1.08991 * 117.49796 * 214.98248 * 23 21 20 38 38 H 1.09006 * 117.49815 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 1 0.6249 -2.5569 0.8920 11 6 2.2455 -3.6631 0.0015 12 6 3.0813 -3.6099 -1.2812 13 6 2.1426 -3.6472 -2.4910 14 6 1.1520 -2.4840 -2.3945 15 1 1.6957 -1.5398 -2.4267 16 6 0.1873 -2.5482 -3.5505 17 6 -0.9459 -3.2735 -3.6111 18 7 -1.5155 -3.0543 -4.8054 19 6 -0.7787 -2.2203 -5.4870 20 7 0.2908 -1.8756 -4.7380 21 6 1.3633 -0.9557 -5.1255 22 6 1.1766 -0.1569 -6.4169 23 6 2.1828 -1.3094 -6.3682 24 8 0.4288 -2.5758 -1.1647 25 1 -0.4849 0.8401 0.0004 26 1 1.7018 -4.6068 0.0431 27 1 2.9022 -3.5823 0.8676 28 1 3.7531 -4.4677 -1.3143 29 1 3.6643 -2.6892 -1.3002 30 1 1.5968 -4.5907 -2.4997 31 1 2.7247 -3.5548 -3.4079 32 1 -1.3287 -3.9187 -2.8341 33 1 -0.9914 -1.8617 -6.4833 34 1 1.8835 -0.4667 -4.3019 35 1 0.2556 -0.3153 -6.9781 36 1 1.5743 0.8576 -6.4431 37 1 3.2420 -1.0527 -6.3623 38 1 1.9243 -2.2267 -6.8973 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393859638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:13 Heat of formation + Delta-G solvation = 38.358074 kcal Electronic energy + Delta-G solvation = -20653.546082 eV Core-core repulsion = 17690.847352 eV Total energy + Delta-G solvation = -2962.698730 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.69727 -38.11456 -37.16901 -32.80759 -32.39806 -31.72742 -30.70803 -27.96307 -25.60620 -23.55247 -23.16005 -22.66407 -22.14596 -20.60428 -19.21106 -18.87213 -17.19924 -16.31662 -15.51976 -14.97885 -14.72689 -14.54599 -14.28825 -13.67797 -13.50049 -13.47088 -13.11090 -12.70575 -12.41830 -11.86405 -11.77126 -11.65466 -11.27479 -11.18042 -10.97929 -10.78844 -10.71727 -10.45341 -10.24734 -9.98671 -9.76747 -9.37268 -8.96069 -8.76799 -8.51369 -8.00357 -7.62987 -6.03764 -4.20167 2.43047 2.97104 3.20813 3.29100 3.29672 3.63687 3.73164 4.33275 4.43315 4.67831 4.72493 4.93498 5.02491 5.26313 5.40122 5.54529 5.59981 5.67433 5.72048 5.80714 5.84264 5.88268 6.11451 6.17520 6.29857 6.41694 6.44193 6.54289 6.75589 6.87914 6.94568 6.99377 7.12625 7.31635 7.64757 7.66024 7.81743 8.15508 8.54431 8.76694 9.01772 9.51944 10.99907 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.016338 B = 0.008572 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.338233 B = 3265.476464 C = 3876.407001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.080 3.920 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.562 4.562 8 H 0.057 0.943 9 C 0.213 3.787 10 H 0.065 0.935 11 C -0.143 4.143 12 C -0.108 4.108 13 C -0.133 4.133 14 C 0.182 3.818 15 H 0.066 0.934 16 C 0.016 3.984 17 C -0.015 4.015 18 N -0.495 5.495 19 C 0.158 3.842 20 N -0.426 5.426 21 C 0.061 3.939 22 C -0.175 4.175 23 C -0.179 4.179 24 O -0.360 6.360 25 H 0.261 0.739 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.169 0.831 33 H 0.195 0.805 34 H 0.143 0.857 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.942 -2.187 -10.591 11.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.127 4.127 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.600 4.600 8 H 0.075 0.925 9 C 0.157 3.843 10 H 0.082 0.918 11 C -0.181 4.181 12 C -0.145 4.145 13 C -0.172 4.172 14 C 0.122 3.878 15 H 0.084 0.916 16 C -0.098 4.098 17 C -0.162 4.162 18 N -0.214 5.214 19 C -0.122 4.122 20 N -0.110 5.110 21 C -0.043 4.043 22 C -0.213 4.213 23 C -0.217 4.217 24 O -0.278 6.278 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.187 0.813 33 H 0.212 0.788 34 H 0.160 0.840 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.901 -2.380 -10.860 11.782 hybrid contribution 1.498 1.532 0.242 2.157 sum 5.399 -0.847 -10.617 11.942 Atomic orbital electron populations 1.70049 1.05759 1.26517 1.46537 1.25044 0.94636 0.98851 0.94168 0.86870 0.79842 0.83782 0.78738 1.20342 1.21199 1.20021 1.21501 0.93075 0.91118 1.54278 0.92491 1.19752 0.88660 0.90963 0.84903 0.91780 1.22190 0.99264 0.99798 0.96813 1.21444 0.97308 1.00821 0.94944 1.22083 0.97862 0.99460 0.97759 1.19520 0.88293 0.97115 0.82873 0.91612 1.21207 1.01343 0.98875 0.88401 1.21959 0.94098 1.04559 0.95560 1.70232 1.28997 1.16343 1.05804 1.24569 0.86808 1.01241 0.99596 1.44585 1.18969 1.33599 1.13804 1.21966 0.92704 0.96180 0.93498 1.23370 1.01727 0.97523 0.98632 1.23473 0.98125 0.99935 1.00207 1.87963 1.34543 1.93485 1.11845 0.92895 0.93811 0.92433 0.93856 0.91380 0.92204 0.93075 0.81346 0.78837 0.83995 0.87880 0.87157 0.87339 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.48 12.84 55.43 0.71 -23.77 16 2 C 0.08 2.14 5.40 -17.82 -0.10 2.04 16 3 Si 0.88 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.56 -14.62 6.59 -34.44 -0.23 -14.85 16 8 H 0.06 1.45 6.87 -52.49 -0.36 1.09 16 9 C 0.21 5.24 3.16 -27.83 -0.09 5.16 16 10 H 0.06 1.72 8.14 -51.93 -0.42 1.29 16 11 C -0.14 -2.90 5.59 -26.59 -0.15 -3.05 16 12 C -0.11 -1.98 5.77 -26.55 -0.15 -2.14 16 13 C -0.13 -2.47 5.40 -26.59 -0.14 -2.62 16 14 C 0.18 3.93 2.68 -27.84 -0.07 3.86 16 15 H 0.07 1.55 6.19 -51.93 -0.32 1.23 16 16 C 0.02 0.32 6.02 -81.60 -0.49 -0.17 16 17 C -0.02 -0.32 11.45 -17.81 -0.20 -0.52 16 18 N -0.50 -9.80 11.25 -14.66 -0.16 -9.96 16 19 C 0.16 2.65 11.88 -90.38 -1.07 1.58 16 20 N -0.43 -7.40 3.09 -106.91 -0.33 -7.73 16 21 C 0.06 0.86 6.62 -67.93 -0.45 0.41 16 22 C -0.17 -1.79 9.99 -26.69 -0.27 -2.05 16 23 C -0.18 -1.86 10.40 -26.69 -0.28 -2.14 16 24 O -0.36 -9.02 9.35 -35.23 -0.33 -9.35 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.32 6.86 -51.93 -0.36 0.96 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.17 3.45 8.06 -52.48 -0.42 3.03 16 33 H 0.19 2.40 7.03 -52.49 -0.37 2.03 16 34 H 0.14 2.17 7.36 -51.93 -0.38 1.78 16 35 H 0.10 0.95 6.85 -51.93 -0.36 0.60 16 36 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 309.14 15.07 4.66 4.66 Total: -1.00 -30.54 309.14 -9.68 -40.22 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.51 Total: 5.01 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -3.69 Total: -14.49 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.22 Total: -41.46 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.33 Total: -9.35 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.54 -9.68 -40.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393859638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.577 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds