Wall clock time and date at job start Mon Mar 30 2020 06:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00235 * 2 1 4 4 H 1.48505 * 109.46845 * 240.00073 * 3 2 1 5 5 H 1.48498 * 109.47042 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47304 * 120.00105 * 3 2 1 7 7 C 1.37882 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99975 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99780 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.49533 * 299.96912 * 9 7 2 11 11 C 1.53098 * 109.47907 * 179.97438 * 9 7 2 12 12 C 1.53180 * 109.16075 * 297.62884 * 11 9 7 13 13 C 1.53175 * 109.03606 * 303.01560 * 12 11 9 14 14 C 1.53092 * 109.16344 * 56.98567 * 13 12 11 15 15 H 1.09000 * 109.48212 * 62.37239 * 14 13 12 16 16 C 1.50699 * 109.48159 * 182.40725 * 14 13 12 17 17 C 1.34674 * 126.59216 * 84.96659 * 16 14 13 18 18 N 1.34122 * 108.02124 * 179.97438 * 17 16 14 19 19 C 1.30500 * 109.25669 * 359.97438 * 18 17 16 20 20 N 1.35040 * 108.69673 * 359.77001 * 19 18 17 21 21 C 1.46508 * 126.39383 * 180.26532 * 20 19 18 22 22 C 1.52998 * 117.49885 * 8.86923 * 21 20 19 23 23 C 1.53002 * 117.49973 * 300.20859 * 21 20 19 24 24 O 1.42905 * 109.48225 * 60.00171 * 9 7 2 25 25 H 0.96998 * 119.99677 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.52270 * 177.72129 * 11 9 7 27 27 H 1.08995 * 109.57012 * 57.55977 * 11 9 7 28 28 H 1.09005 * 109.54069 * 183.15152 * 12 11 9 29 29 H 1.08996 * 109.62096 * 62.93059 * 12 11 9 30 30 H 1.09004 * 109.52714 * 297.07587 * 13 12 11 31 31 H 1.09001 * 109.57654 * 176.92317 * 13 12 11 32 32 H 1.08005 * 125.98463 * 359.96510 * 17 16 14 33 33 H 1.08001 * 125.64663 * 180.02562 * 19 18 17 34 34 H 1.08998 * 115.54998 * 154.53905 * 21 20 19 35 35 H 1.09004 * 117.49956 * 0.02562 * 22 21 20 36 36 H 1.08995 * 117.49812 * 145.01800 * 22 21 20 37 37 H 1.08991 * 117.49796 * 214.98248 * 23 21 20 38 38 H 1.09006 * 117.49815 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 1 0.6249 -2.5569 0.8920 11 6 2.2455 -3.6631 0.0015 12 6 3.0813 -3.6099 -1.2812 13 6 2.1426 -3.6472 -2.4910 14 6 1.1520 -2.4840 -2.3945 15 1 1.6957 -1.5398 -2.4267 16 6 0.1873 -2.5482 -3.5505 17 6 -0.9459 -3.2735 -3.6111 18 7 -1.5155 -3.0543 -4.8054 19 6 -0.7787 -2.2203 -5.4870 20 7 0.2908 -1.8756 -4.7380 21 6 1.3633 -0.9557 -5.1255 22 6 1.1766 -0.1569 -6.4169 23 6 2.1828 -1.3094 -6.3682 24 8 0.4288 -2.5758 -1.1647 25 1 -0.4849 0.8401 0.0004 26 1 1.7018 -4.6068 0.0431 27 1 2.9022 -3.5823 0.8676 28 1 3.7531 -4.4677 -1.3143 29 1 3.6643 -2.6892 -1.3002 30 1 1.5968 -4.5907 -2.4997 31 1 2.7247 -3.5548 -3.4079 32 1 -1.3287 -3.9187 -2.8341 33 1 -0.9914 -1.8617 -6.4833 34 1 1.8835 -0.4667 -4.3019 35 1 0.2556 -0.3153 -6.9781 36 1 1.5743 0.8576 -6.4431 37 1 3.2420 -1.0527 -6.3623 38 1 1.9243 -2.2267 -6.8973 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393859638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:12 Heat of formation + Delta-G solvation = 21.567797 kcal Electronic energy + Delta-G solvation = -20654.274163 eV Core-core repulsion = 17690.847352 eV Total energy + Delta-G solvation = -2963.426811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.09533 -39.86793 -38.17294 -34.74275 -34.10505 -33.25210 -32.26292 -29.57259 -27.51793 -25.10031 -24.46448 -23.86537 -23.47459 -22.02632 -20.76642 -20.41546 -18.51564 -18.19816 -16.79625 -16.63524 -16.35743 -16.22098 -15.74337 -15.21723 -15.15546 -14.75307 -14.56149 -14.41593 -13.75878 -13.59783 -13.28451 -13.01541 -12.79697 -12.53865 -12.50275 -12.33597 -12.28845 -11.82274 -11.73905 -11.55822 -11.50293 -10.95244 -10.73389 -10.47890 -10.18494 -9.77582 -9.20657 -8.09865 -6.32173 1.04813 1.35546 1.38531 1.45753 1.72553 2.19478 2.37835 2.74882 3.09381 3.36565 3.51920 3.76768 3.81805 3.90720 3.99986 4.17902 4.23402 4.32519 4.50102 4.52835 4.60553 4.64949 4.75034 4.88188 4.90922 4.96273 5.00842 5.09897 5.17323 5.24506 5.34467 5.41439 5.50507 5.68388 5.77014 5.79615 6.14384 6.36874 6.75185 7.04863 7.17000 7.45319 8.93675 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.016338 B = 0.008572 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.338233 B = 3265.476464 C = 3876.407001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.029 3.971 3 Si 0.943 3.057 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.562 4.562 8 H 0.062 0.938 9 C 0.206 3.794 10 H 0.027 0.973 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.124 4.124 14 C 0.187 3.813 15 H 0.040 0.960 16 C -0.008 4.008 17 C -0.035 4.035 18 N -0.525 5.525 19 C 0.177 3.823 20 N -0.422 5.422 21 C 0.012 3.988 22 C -0.151 4.151 23 C -0.154 4.154 24 O -0.387 6.387 25 H 0.257 0.743 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.157 0.843 33 H 0.241 0.759 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.950 -1.758 -13.084 14.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.174 4.174 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.599 4.599 8 H 0.081 0.919 9 C 0.150 3.850 10 H 0.045 0.955 11 C -0.174 4.174 12 C -0.140 4.140 13 C -0.162 4.162 14 C 0.128 3.872 15 H 0.058 0.942 16 C -0.123 4.123 17 C -0.182 4.182 18 N -0.244 5.244 19 C -0.105 4.105 20 N -0.104 5.104 21 C -0.092 4.092 22 C -0.188 4.188 23 C -0.191 4.191 24 O -0.307 6.307 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.174 0.826 33 H 0.257 0.743 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.954 -1.949 -13.359 14.755 hybrid contribution 0.853 1.403 0.968 1.906 sum 6.807 -0.546 -12.390 14.147 Atomic orbital electron populations 1.70219 1.07531 1.26921 1.48599 1.25811 0.95256 1.02378 0.93913 0.85860 0.78578 0.79397 0.79369 1.18885 1.21615 1.19229 1.21789 0.93306 0.91862 1.52976 0.91948 1.19680 0.88777 0.92607 0.83961 0.95534 1.22074 0.98646 0.98204 0.98496 1.21422 0.97187 1.01872 0.93480 1.22002 0.97301 0.98035 0.98904 1.19509 0.88714 0.97130 0.81875 0.94228 1.21083 1.01471 1.00241 0.89547 1.21917 0.94759 1.05300 0.96224 1.70199 1.30182 1.18323 1.05726 1.25436 0.85343 0.99182 1.00511 1.44727 1.19789 1.33230 1.12666 1.22195 0.93919 0.98303 0.94747 1.23570 1.02311 0.98286 0.94676 1.23567 0.99032 1.00275 0.96260 1.87884 1.35910 1.93710 1.13166 0.93433 0.92833 0.91599 0.90298 0.92351 0.92026 0.90897 0.82581 0.74273 0.86235 0.86335 0.85448 0.85517 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.48 12.84 21.45 0.28 -53.21 16 2 C 0.03 1.58 5.40 84.66 0.46 2.04 16 3 Si 0.94 42.38 29.54 68.60 2.03 44.41 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.56 -29.81 6.59 25.60 0.17 -29.64 16 8 H 0.06 3.17 6.87 -2.91 -0.02 3.15 16 9 C 0.21 10.51 3.16 29.88 0.09 10.60 16 10 H 0.03 1.52 8.14 -2.39 -0.02 1.51 16 11 C -0.14 -5.50 5.59 30.69 0.17 -5.33 16 12 C -0.10 -3.60 5.77 30.71 0.18 -3.42 16 13 C -0.12 -4.50 5.40 30.68 0.17 -4.33 16 14 C 0.19 8.27 2.68 29.88 0.08 8.35 16 15 H 0.04 1.94 6.19 -2.39 -0.01 1.92 16 16 C -0.01 -0.35 6.02 40.95 0.25 -0.10 16 17 C -0.04 -1.52 11.45 83.53 0.96 -0.56 16 18 N -0.53 -20.65 11.25 -200.31 -2.25 -22.90 16 19 C 0.18 5.57 11.88 180.26 2.14 7.71 16 20 N -0.42 -14.26 3.09 -492.17 -1.52 -15.78 16 21 C 0.01 0.32 6.62 44.99 0.30 0.62 16 22 C -0.15 -2.51 9.99 30.62 0.31 -2.20 16 23 C -0.15 -2.62 10.40 30.62 0.32 -2.30 16 24 O -0.39 -20.32 9.35 -148.98 -1.39 -21.71 16 25 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.06 2.17 6.86 -2.39 -0.02 2.15 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.16 6.83 8.06 -2.91 -0.02 6.81 16 33 H 0.24 4.95 7.03 -2.91 -0.02 4.93 16 34 H 0.12 3.66 7.36 -2.39 -0.02 3.64 16 35 H 0.12 1.62 6.85 -2.38 -0.02 1.60 16 36 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -69.27 309.14 3.77 -65.51 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 1.05 Total: 22.26 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 5.58 Total: -18.57 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -3.50 Total: -91.89 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -1.39 Total: -21.71 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -69.27 3.77 -65.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393859638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.073 kcal (2) G-P(sol) polarization free energy of solvation -69.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds